ID:

dsi_23432

 Coordinate:

3l:15839274-15839534 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.6 -34.2 -34.2

Flybase annnotation

exon [3l_15839159_15839273_-]; CDS [3l_15839159_15839273_-]; CDS [3l_15839535_15839597_-]; exon [3l_15839535_15839726_-]; intron [3l_15839274_15839534_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATTTGGATGCCTTACGCGCCCAGCGCATGTCCCAAATGCAGTCGCACTTCGTAAGTGAAATATTTGAGTGGCTCCAAACCGGCTGGATTCCTCTAGAGAATTCCAAAAATAGTCATAACTTGGAATGTTAGCCAATTAGACTATGTAAAATATAATGAAAAGGTTAAGAATATATTGGCTATTGTATGCTTAGTTAGTTCTTAAAGGCACATTTCCTTTTAGTCCCTATGAGTCATCCTTTTCGACTGGGACACCTGTTTCTTTAAAGTGCAATCCTTCAATGACCTTAACTCCTTTTTTCCCATTTTTAGGGCGGTGGCAATGATGCGGAAAAGCAACAAGCGCAGCAGGAGCAGATGCG
***********************************************************************************************************..(((((.(((.((((........))))))))))))((((.....(((.(((((((((((((((..((((((........)).))))..)))))))((((.......))))...(((((....((((.........))))))))))))).)))).)))...))))................************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 O001
Testis
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
...........................TGTCCCAAATGCAGTCGCACT......................................................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................AACAAGCGCAGCAGGAGCAGATGCG 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GTGCAATCCTTCAATGACCTT......................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................AAGCAACAAGCGCAGCAGGA......... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..........CTTACGCGCCCAGCGCATG............................................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................CTATTTTTAGGGCGGTGG.......................................... 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................CATTTTTAGGGCGGTGGCAAT...................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................................................GTGGCAATGATGCGGAAAAG.......................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TAAAATATAATGAGGAGATTAAGA................................................................................................................................................................................................ 24 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................AATAGTCATAACTTGGAATG.......................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................GTCCCAAATGCAGTCGCACTTCGGCGGTG................................................................................................................................................................................................................................................................................................................ 29 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................TAGTCATAACTTGGAATGTT........................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................AGTCATCCTTTTCGACTGGG............................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................GGCAATGATGCGGAAAAGCAA....................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................................................................GCGGAAAAGCAACAAGCGCAGTTT........... 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................TCCTTCACTGTCCTTGACTC.................................................................... 20 3 3 0.67 2 0 0 0 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................TGGCAATGATGCGGA.............................. 15 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................AGCGCAGCAGGAGCAGA.... 17 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................GGCAATGATGCGGAAAA........................... 17 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................ATTTGACTGGCTCCGAAC.......................................................................................................................................................................................................................................................................................... 18 2 6 0.33 2 0 0 0 0 0 0 0 0 0 0 2 0
...............................................................................................................................................................................................................................................................................................................................................CAACGGGCGCAGCAGGAGCAG..... 21 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................................................TCGACTCGGACACCTCT....................................................................................................... 17 2 13 0.15 2 0 0 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

TAAACCTACGGAATGCGCGGGTCGCGTACAGGGTTTACGTCAGCGTGAAGCATTCACTTTATAAACTCACCGAGGTTTGGCCGACCTAAGGAGATCTCTTAAGGTTTTTATCAGTATTGAACCTTACAATCGGTTAATCTGATACATTTTATATTACTTTTCCAATTCTTATATAACCGATAACATACGAATCAATCAAGAATTTCCGTGTAAAGGAAAATCAGGGATACTCAGTAGGAAAAGCTGACCCTGTGGACAAAGAAATTTCACGTTAGGAAGTTACTGGAATTGAGGAAAAAAGGGTAAAAATCCCGCCACCGTTACTACGCCTTTTCGTTGTTCGCGTCGTCCTCGTCTACGC
*************************************************************************..(((((.(((.((((........))))))))))))((((.....(((.(((((((((((((((..((((((........)).))))..)))))))((((.......))))...(((((....((((.........))))))))))))).)))).)))...))))................*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553487
NRT_0-2 hours eggs
...........................................................................................................................................................................................................................ATCAGGGATACTCAGTAGGAA......................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
................GCGGGTCGCGTACAGGGTTTA.................................................................................................................................................................................................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...................GGTCGCGTACAGGGTTTAC................................................................................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................ACTACTCCTTTTCGTTGT..................... 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................CGTTAGGAAGTTACTGGAATTG...................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0
......................CGCGTACAGGGTTTACGTCAG.............................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................GTTACTGGAGTTGAGGAAAAA.............................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............CGCGGGTCGCGTACAGGGTTT..................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................CGAGGTGTGGCCGACC................................................................................................................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................................................................................................................ACCGTTACTACGTCTTTTG.......................... 19 2 4 0.50 2 0 0 2 0 0 0 0 0 0
..............................................................................................TCTATTAAGGTTTGTATCATT...................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TCAGGGATAATTAGTA............................................................................................................................. 16 2 20 0.15 3 0 0 0 2 0 0 0 0 1
............................................................................................................................................................................................................................TCGGGGATATTCAGTAGAA.......................................................................................................................... 19 3 18 0.11 2 0 0 0 0 0 0 0 2 0
..............GCGCGGGCTGCGCACAGGG........................................................................................................................................................................................................................................................................................................................................ 19 3 10 0.10 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................AAAGCTGACCCTGTT........................................................................................................... 15 1 20 0.10 2 0 0 0 2 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................ACCGTTACTACGTCTTTTGA......................... 20 3 15 0.07 1 0 0 1 0 0 0 0 0 0
................GCGGGATGAGTACAGGGTT...................................................................................................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................................................CCGTTACTACGTCTTTTG.......................... 18 2 18 0.06 1 0 0 1 0 0 0 0 0 0
...........................................................................................AGGTCGCGTAAGGTTTTTAT.......................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 1 0 0
.......................................................................GAGGATTGGCCGGCC................................................................................................................................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 0 0 0 0 0 1
...........................................................................................................................TTACAGTCGGTTAGTCT............................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Generated: 04/23/2015 at 09:42 PM