ID:

dsi_23431

 Coordinate:

2l:12088156-12088305 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.2 -15.1 -14.8

Flybase annnotation

exon [2l_12088306_12088388_-]; three_prime_UTR [2l_12088306_12088388_-]; intron [2l_12087899_12088305_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTGTTCCGGATATGTGGCTCCATCTGTGTCATGCTGTACCCGAACAGCAGGTATACAAACCATTATACAATCTTACACTTAACACAACTATTTATAGCGAACTATTTTAAGTTTCGGCAGAGTAAATAAGTAGAGATCAGGCATGATTATGTTGCGAGTGAGATCCCCGCAAACTGGGCGATCCCTCGATGTCGGTTCTTGCACATAGGCTTTCATATACTAGAGCGTAGTAGAAATCCTTGAAAGAAAT
****************************************************************************************************************************************...(((((..........((((...((((((((.....)))).)))).)))))))))...****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR902009
testis
 M053
female body
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 O002
Head
 GSM343915
embryo
........................................................................................................................................TCAGGCATGATTATGTTGCGAGTGAGA....................................................................................... 27 0 1 9.00 9 1 2 4 0 0 0 1 0 0 0 1 0 0 0
...TTCCGGATATGTGGCTCCATC.................................................................................................................................................................................................................................. 21 0 1 6.00 6 0 0 0 6 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AACTGGGCGATCCCTCGATGTCGGT...................................................... 25 0 1 5.00 5 3 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................CCCTCGATGTCGGTTCTTGCACATAGGC........................................ 28 0 1 4.00 4 2 0 0 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CCTCGATGTCGGTTCTTGCAC.............................................. 21 0 1 3.00 3 0 0 0 2 0 0 0 0 0 0 0 1 0 0
................GCTCCATCTGTGTCATGCTGT..................................................................................................................................................................................................................... 21 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0
................................................................................................................TTCGGCAGAGTAAATAAGTAGAGATC................................................................................................................ 26 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0
........................TGTGTCATGCTGTACCCGAACAGCAGG....................................................................................................................................................................................................... 27 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................ATGATTATGTTGCGAGTGAGAT...................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
............TGTGGCTCCATCTGTGTCATG......................................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................TAAATAAGTAGAGATCAGGCAT.......................................................................................................... 22 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0
........................................................................................................................................................TGCGAGTGAGATCCCCGCAAACTGGGCGA..................................................................... 29 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TTATGTTGCGAGTGAGATCCC................................................................................... 21 0 1 2.00 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................TTTAAGTTTCGGCAGAGTAAATAAGT....................................................................................................................... 26 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGGGCGATCCCTCGATGTCGGTT..................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GAGCGTAGTAGAAATCCT.......... 18 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
..........................................................................................................................................................................AAACTGGGCGATCCCTCGATGTCGGT...................................................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGATTATGTTGCGAGTGAGATCCCCGC................................................................................ 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................TCCCCGCAAACTGGGCGATCCCTCGA............................................................. 26 0 1 2.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0
..........................................................................................................................TAAATAAGTAGAGATCAGGCATGATTA..................................................................................................... 27 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0
..............................................................................................................................TAAGTAGAGATCAGGCATG......................................................................................................... 19 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
...................................................................................................................................................................................GATCCCTCGATGTCGGCT..................................................... 18 1 2 1.50 3 0 0 0 0 1 0 0 2 0 0 0 0 0 0
.......................................................................................................................................................................................CCTCGATGTCGGTTCTTGCAT.............................................. 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TATGTTGCGAGTGAGA....................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................TCGGCAGAGTAAATAAGTAGAGATA................................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TAAATAAGTAGAGATCAGGCAA.......................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................TAAGTAGAGATCAGGCATGA........................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................TTCGGCAGAGTAAATAAGTAGAGAT................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................GGCAGAGTAAATAAGTAGAGATCAGG............................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................AATAAGTAGAGATCAGGCATG......................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................TTCGGCAGAGTAAATAAGTAGAGA.................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................CGATGTCGGTTCTTGCACATAGGCT....................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................TCTGTGTCATGCTGTACCCGAACAGCAGG....................................................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTAAGTTTCGGCAGAGTAAATAAGTAGAGA.................................................................................................................. 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................AGAGATCAGGCATGATTATGT.................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TCTGTGTCATGCTGTACCCGG............................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................CCTCGATGTCGGTTCGT.................................................. 17 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................GCAGAGTAAATAAGTAGAGATCAGGC............................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GATCCCTCGATGTCGGTTCTTGCACA............................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TCGATGTCGGTTCTTGCACATAGGCTT...................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................TGCGAGTGAGATCCCCGCAA.............................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................................CGCAAACTGGGCGATCCCTCGATGTC......................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................GATTATGTTGCGAGTGAGATCCCC.................................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TTCATATACTAGAGCGTAGTAGAAATCCTT......... 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....TCCGGATATGTGGCTCCATCTGTGTCA........................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................CCTCGATGTCGGTTCTTGCACATAGGC........................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................AAATAAGTAGAGATCAGGC............................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................GGCAGAGTAAATAAGTAGAGATCAGGC............................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................TGGGCGATCCCTCGATGTCGGT...................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TATACTAGAGCGTAGTAGAAATCCTT......... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGATCCCTCGATGTCGGTTCTTGCA............................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TCTGTGTCATGCTGTACCCGAACAGC.......................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TCGGTTCTTGCACATAGGC........................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AGAGTAAATAAGTAGAGATCAGGCA........................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AGCGTAGTAGAAATCCTTGA....... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................ATCCCTCGATGTCGGTTCTTGCAC.............................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................CTCCATCTGTGTCATGCTG...................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TACTAGAGCGTAGTAGAAATCCTTGA....... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................AGTAGAAATCCTTGAAAGAAA. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................ATTATGTTGCGAGTGAGATCCCCGCAA.............................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................GCGATCCCTCGATGTCGGC...................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....TCCGGATATGTGGCTCCATCT................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTCCGAGTGAGATCCCCGCAACCTGGGCG...................................................................... 29 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................TCTGTGTCATGCTGTACC.................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................AGTAGAAATCCTTGAAAGAA.. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GGAGCGTAGTGGAAGTCCTTG........ 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CGTAGTAGAAATCCTTGAA...... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................CATGCTGTACCCGAACA............................................................................................................................................................................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTCGATGTCGGTTCTTGCACATAGGC........................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TTATAGCGAACTATTTTAAGTTTCGGC.................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TCGGCAGAGTAAATAAGTAGAGATCA............................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TCGATGTCGGTTCTTGCACATA........................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................ATCTGTGTCATGCTGTACC.................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................TCTTGCACATAGGCTTTCATATACTAGA.......................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................TTTTAAGTTTCGGCAGAGTAAATA.......................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................GGGCGATCCCTCGATGTCGGT...................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................TCCATCTGTGTCATGCTGTACCCGAA.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................GTTTCGGCAGAGTAAATAAGTAGAGA.................................................................................................................. 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................TGTGTCATGCTGTACCCGAACAGCAG........................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AGAGTAAATAAGTAGAGATCAGGCAA.......................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..GTTCCGGATATGTGGCTCC..................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TGAGATCCCCGCAAACTGGGCGAT.................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................AATAAGTAGAGATCAGGCATGATTA..................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTAAATAAGTAGAGATCAGGC............................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GGGCGATCCCTCGATGTCGGTT..................................................... 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................TGTTGCGAGTGAGATCCCCGCAAACTGGGCGA..................................................................... 32 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................TAAGTAGAGATCAGGCATGATTA..................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................TGATTATGTTGCGAGTGAGATCCCCG................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CTAGAGCGTAGTAGAAATCCT.......... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................CAGAGTAAATAAGTAGAGATC................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ACTAGAGCGTAGTAGAAATCCT.......... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TAAATAAGTAGAGATCAGGCA........................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................CTGTGTCATGCTGTACCCGAAC............................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CGTAGTAGAAATCCTTGAAAG.... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...TTCCGGATATGTGGCTCCA.................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................TTCTTGCACATAGGCTTTCATATACT............................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATCCCTCGATGTCGGT...................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGAGCGTAGTAGAAATCCTTGAAAGA... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGGGCGATCCCTCGATGTCGG....................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................ATCCTTCGATGTCGGTTCT................................................... 19 1 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
.............................................................................................................................ATAAGTAGAGATCAGGCA........................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................ATGTTGCGAGTGAGATCCC................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AACTGGGCGATCCCTCGATGTC......................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ACTGGGCGATCCCTCGATGTCGGT...................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TAAATAAGCAGAGATCAGGCA........................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TACTAGAGCGTAGTAGAAATCCT.......... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TACTAGAGCGTAGTAGAA............... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AACTGGGCGATCCCTCGATGTCGGA...................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TAAATAAGTAGAGATCAGGCATGATT...................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................GCTCCATCTGTGTCATGCTGC..................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.TGTTCCGGATATGTGGCTCC..................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................TATTTTAAGTTTCGGCAGAGTAAA............................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................ATTTTAAGTTTCGGCAGAGTAA............................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................CGGCAGAGTAGATAAGTAGAGT.................................................................................................................. 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTCGATGTCGGTTCTTGCACA............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GGCATGATTATGTTGCGAGTG.......................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................TGCGAGTGAGATCCCCGCAAACTGGG........................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................AGCAGGTATACAAACCATTAT........................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................GGCATGATTATGTTGCGAGTGAGA....................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................TCGATGTCGGTTCTTGCACATAGGC........................................ 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................TCGGCAGAGTAAATAAGTAGAGATC................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TTCGGCAGAGTAAATAAGTAGAGAA................................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................AGTTTCGGCAGAGTAAATAAGTAGAGA.................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AGAGCGTAGTAGAAATCCTTGAAAG.... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CGATCCCTCGATGTCGGTTCTTGCACA............................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TTGCGAGTGAGATCCCCGCAAACTGGGA....................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTTAAGTTTCGGCAGAGTAAATAAGTAGAGA.................................................................................................................. 31 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GATTCCTCGATGTCGGCT..................................................... 18 2 3 0.67 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTCGATGTCGGCTCTCGCA............................................... 19 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................GATTCCTCGATGTCGGCTCT................................................... 20 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GATCCCTCGATGTCGGCTC.................................................... 19 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........GATATGTGGCTCCAT................................................................................................................................................................................................................................... 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ATCCTTCGATGTCGCTTCTT.................................................. 20 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................TTATGTTGCGAGTGAAA....................................................................................... 17 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GATTCTTCGATGTCGGTTCT................................................... 20 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ACCTCGATGTCGGTTC.................................................... 16 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................GATCCCTCGATGTCGG....................................................... 16 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GATTCTTCGATGTCGGTT..................................................... 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................ATCCTTGAAAGAAAT 15 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TCGATGTCGGCTCTTCCGCA............................................. 20 3 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
....................CATCCGCATCATGCTGTACC.................................................................................................................................................................................................................. 20 3 7 0.29 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
.....................................................................................................................................................ATTTGCGAGTGAGATCCC................................................................................... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ACCTCGATGTCGGTT..................................................... 15 1 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................TACTAGACCGTCGTAGCA............... 18 3 9 0.22 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................ACTAGAGTGTAGTAG................. 15 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TATCCCTCGATGTCGGCTC.................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................GGTCCCTCGATGTCGGCT..................................................... 18 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GATTCTTCGATGTCGGTTCC................................................... 20 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GAGCGATCCTTCGATGTC......................................................... 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................GTCGATCCTTCGATGTCG........................................................ 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................CTCGATGTCGGCTCTCGC................................................ 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................TGTGTCGTGCTGTAC................................................................................................................................................................................................................... 15 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................GATGTCGGTTCTTCC................................................ 15 1 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................GCCGATCCTTCGATGTC......................................................... 17 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCCCTCGATGTCGGC...................................................... 15 1 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................CGACTGATAGCGAACTATT................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................CTTGATGTCGGCTCTTCCA............................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GACAAGGCCTATACACCGAGGTAGACACAGTACGACATGGGCTTGTCGTCCATATGTTTGGTAATATGTTAGAATGTGAATTGTGTTGATAAATATCGCTTGATAAAATTCAAAGCCGTCTCATTTATTCATCTCTAGTCCGTACTAATACAACGCTCACTCTAGGGGCGTTTGACCCGCTAGGGAGCTACAGCCAAGAACGTGTATCCGAAAGTATATGATCTCGCATCATCTTTAGGAACTTTCTTTA
******************************************************...(((((..........((((...((((((((.....)))).)))).)))))))))...**************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
...............CCGAGGTAGACACAGTACGAC...................................................................................................................................................................................................................... 21 0 1 4.00 4 1 2 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TCCGAAAGTATATGATCTCGC....................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................CGTTTGACCCGCTAGGGAGCTA............................................................ 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GCCGAAAGTATATGATCTCGC....................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................................AGTTTGGTAATATGTTAGAATG.............................................................................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................................TCTGTTAGAATGTCAATTGT...................................................................................................................................................................... 20 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................TCAAAGCCGTCTCATTTATTC........................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................TCCAGGGGCGTTTGACTTGCT..................................................................... 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GCCAAGAACGTGTATCCGAAAGT................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................GGTAATATGTTAGAATGTGA........................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................TTTGGTAATATGTTAGAATGT............................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................CCGTCTCATTTATTCATCTCT.................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................GTTTGGTAATATGTTAGAAT............................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................AAAGCCGTCTCATTTATTCAT...................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....AGGCCTATACACCGA....................................................................................................................................................................................................................................... 15 0 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
.....................................TGGGCTTGTCGTCAAT..................................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
..........................ACAGTAAGACAGGGGCTTC............................................................................................................................................................................................................. 19 3 8 0.50 4 0 0 0 1 0 0 0 0 3 0 0
...........................................TGTCGTCCATAAGATTGG............................................................................................................................................................................................. 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GACAGTATATGATGTCGTATC.................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
............CCACCAAGGTAGAAACAGTAC......................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................TCTCAGTGATTCATCTCT.................................................................................................................. 18 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
...............GCGAGGTATACACAGGACG........................................................................................................................................................................................................................ 19 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................ATGATCTTTAGGAAC........ 15 1 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................ATGTTTGGTAATCTGGGAGA................................................................................................................................................................................. 20 3 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................CCGAGAAGGTGTGTCCGAA...................................... 19 3 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................AACACAACTCTCACCCTAG..................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................CTAGATGCGTTTGACC......................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................AATATCTTAGAATCTGA........................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:12088106-12088355 - dsi_23431 CTGTTC-C--------GGAT------------ATG-T-GGCTC---CATCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTATACA------------ATC----TTACACTTAACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGTAAA--T---------AAGT--AGAGATCAGGCATG--ATTATGTTGCGAGTGAGATCCCCGC-AAACTG--GGCGATCCCTCGATG--TCGGTTCTTGCACA---------------------------------TAGGCTTT-CATA-TACT----AG-AGC--GTAGTAGAAATCCTTGAAAGAAA------------------T
droSec2 scaffold_16:622210-622459 - CTGTTC-C--------GGAT------------ATG-T-GGCTC---CATCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTATACA------------ATC----TTACACTTAACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGTAAA--T---------AAGT--AGAGATCAGGCATG--ATTATGTTGCGAGTGAGATCCCCGC-AAACTG--GGCGATCCCTCGATG--TCGGTTCTTGCACA---------------------------------TAGGCTTT-CATA-TACT----AG-AGC--GTAGTAGAAATCCTTGAAAGAAA------------------T
dm3 chr2L:12431922-12432171 - CTGTTC-C--------GGAT------------CTA-T-GGCTC---CATCTGTGTCATGCT--GTACCCGAACAGCAGGTATAGAAACC----ATTATACA------------ATC----TTACACTTAACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGTAAA--T---------AAGT--AGAGATCAGGCATG--ATTATGTTCCGAGTGAGATCCCCGC-AACCTG--GGCGATCCCTCGATG--TCGGTTCTTGCACA---------------------------------TAGGCTTT-CATA-TACT----AG-AGC--GTAGTAGAAATCCTTGAACGTAA------------------T
droEre2 scaffold_4929:12984429-12984683 + CTGTTC-C--------GGAT------------CTG-T-GGCTC---GATCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTATACA------------GTC----TTACACTTTACACA-TCTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGTAAA--A---------AAGT--AGAGATCAGGCATG--ATTATGTTCCGAGCGAGATCCCCGC-AACCTG--GGCGATCCCTCGATG--TCGGTTCTTGCACA--------------------------------TTAGGCTTTCG-TA-TACTAAGTAG-AGC--GTAGTAGAAATCCTTGAACAAAA------------------T
droYak3 2L:8868303-8868557 - CTGTTC-C--------GGAT------------CTG-T-GGCTC---CATCTGTGTCATGCT--GTACCCGAGCAGCAGGTATACAAACC----ATTATACA------------GTC----TTACACTTTACACA-ACTATTTATAGCGAAC-TATTTTAAGTTGCGGCAGAGTAAA--T---------AAGT--AGAGATCAGGCATG--ATTATGTTCCGAGCGAGATCCCCGC-AACATG--GGCGATCCCTCGATG--TCAGTTCTTGCACA--------------------------------TTAGGCTTT-CACA-TACTAATTAG-AGC--GTAGTAGAAATCCTTGAACAAAA------------------T
droEug1 scf7180000409122:818472-818729 - CACGGA-C--------GGGT------------CTG-T-GGCTC---CTCCTGTGTAGTGCT--GTACCAGAACAGCAGGTATACAAACC----TTTAAACA------------GTC----TTACACTTTACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGACAGAGTGAA--TAT-------AAGT--AGAGAACAGGCAAG--ATTATGTTCCGAGCGCGATGCCCGC-TTAATG--GGCAATCCCTCGATG--TCAGCTCATTCACA--------------------------------TTAGGCTTTTGATA-TACTTATTAGTAGC--GTAGAAGAAAT-CTTGAACAAAA------------------C
droBia1 scf7180000302422:539428-539682 + CTGTGC-C--------GGAT------------CTG-T-GGCTC---CTACTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTTAACA------------GTC----TTACACTTTACAAA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGAAAA--T---------AAGT--AGAGAACAGGCATG--ATTATGTTCCGAGCGAGATCCCTAT-TAACT---GGTGATCCCTCGATG--TCGGTTCCTCCACA--------------------------------TTAGGCTTTTGATA-TACTTATTAGTAGC--GTAGTAGAAATCC-TGAACAAAA------------------C
droTak1 scf7180000415865:163923-164182 + CTGTGC-C--------GGAT------------CTG-T-GGCTC---CTCCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTAAACA------------GTC----TTACACTTTACAAA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGTAAA--T---------AAGT--AGAGAACAGGCATG--ATTATGTTCCGAGCGAGATCCCAGC-CACCAA-TTGCGATCCCTCGATG--TCGGTTCTTTCACA--------------------------------TTAGGCTTTTGATA-TACTTATTAGTAGCGATTAGTAGAAATCCCTGAACAAAA------------------A
droEle1 scf7180000491028:2681840-2682093 + CTGTTA-A--------GGAT------------CTG-T-GGCTC---CTCCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAAAC----ATTAAACA--------------C----TTACACTTTACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGTATA--T---------AAGA--AGAGAAAAGGCATGTAATTACGTTCCGAGCGAGATCCCCGG-TCCCTG--GGAGATCCCTCGATG--TCGGTTCTTTCCAA--------------------------------TTAGGCTTTTGATA-TACTT---AGTAGC--GTAGTAGAAATCCTTGAACAAAA------------------C
droRho1 scf7180000780043:291585-291840 - CTGTTA-C--------GAAT------------CTG-T-GGCTC---CTCCTGTGTCATGCT--GTACCAGAACAGCAGGTATACAAACC----ATTAAACA------------GTC----TTACACTTTACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGTAAA--T---------AAGT--AGAGAACAGGCATGTAATTATGTTCCGAGCGAGATCCCTGC-TCACTG--GGCGATCCCTCGATG--TCGGTTCTTTCCAA--------------------------------TTAGGCTTTTGATA-TACTT---AGTAGC--GTAGAAAAAATCCTTGAACAAAA------------------C
droFic1 scf7180000454015:317198-317456 - CTGTGC-C--------GGAT----------ATCTG-C-GGCGC---CTCCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTAAACA------------GT-----TTACACTTTACACA-ACTATTTATAGCGGAC-TATTTTAAGTTTTGGCAGAGTAAT--T---------AAGAACAGAGAACAGGCAAAATATAATGTTCCGAGCGAGATCCCCGC-TCGCTG--GGCGATCCCTCGATG--TCAGTTCTTTCTAA--------------------------------TTAGGCTTTTGATA-AACTT---AGTAGC--GCAGTAGAAATTCTTGAACAAAA------------------G
droKik1 scf7180000302472:787923-788192 - CCGATCCA--AAAACCGGAT------------ACGATGGGCTTCTCATCCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTGAACA------------GTC----TTACACTTTACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGAAAAATT---------AAGT--GGAGAACACGCAAA-AATTATGTTTCGAGGCCGATCCTCGG-A-CCGA--TGCGATCCCTTGATG--TTAGTTCTTTCAGA--------------------------------TTAGGCTTTTGATA-CACTT---AGTAGCTAGTAGCAGCGATCCTTGAACAAAA------------------T
droAna3 scaffold_12916:12961654-12961922 + CTTATC-C--------GGAT------------CCG-T-GGCTTCACATCCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTGAACA------------GTC----TTACACTTTACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCGGAAAAAC--AAAAAGAAAACGGT--AGAGAGAACGCATA--ATTATGATGAGAGGTTAATATCCGC-CACTTG-CGGATATCCCTCGATATACTGGTTCTTTCCAA--------------------------------TTAGGCTTTTGATAATACTT---AGCAGC--ATAGTAGAGATGCTTGAACAAAA-------------------
droBip1 scf7180000396580:563487-563748 - CGTGTC-C--------GGAT------------CCG-T-GGCTTCACATCCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTGAACA------------GTC----TTACACTTTACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCGGAAAAAC--AAA------ACGGT--AGAGAGAACGCATG--ATTATGGTGAGGGGTCAGCACCCGC-AT-CTGGCGGACATCCCTCGATA-ACTGGTTCTTTCCAA--------------------------------TTAGGCTTTTGATAACACTT---AGTAGC--ATAGTAGAGATGCTTGAACAAAA-------------------
dp5 4_group3:3117117-3117410 - TTGCTC-C--------ACA----------------------------TCC--TGTCATGCT--GTACCAGAACAGCAGGTATACAAACAAAAAATTGAACA------------GTC----TTACACATTACACA-ACTATTTATAGAAAACGTATTTTAAGTTTTGGCAAGGAAAA--C---------AATT--AGAGAACACGCACT--ATAATGTTCAGGATGAGATCCCCACCTCACCA--GGTGGGCTCCCGATACGTTTGTTCTTA---ATGCGCCCATCCCATACCGCAAGAGAGGTGTTCTAGGGATTTTGATA-TACTT---GGTAGC--ATT-TAGTTATTTTTGG-CAATTGGCCAATTGTGTAGTGCTT
droPer2 scaffold_1:4599904-4600197 - TTGCTC-C--------ACA----------------------------TCC--TGTCATGCT--GTACCAGAACAGCAGGTATACAAACAAAAAATTGAACA------------GTC----TTACACATTACACA-ACTATTTATAGAAAACGTATTTTAAGTTTTGGCAAGGAAAA--C---------AATT--AGAGAACACGCACT--ATAATGTTCAGGATGAGATCCCCACCTCACCA--GGTGGGCTCCCGATACGTTTGTTCTTA---ATGCGCCCATCCCATACCGCAAGAGAGGTGTTCTAGGGATTTTGATA-TACTT---GGTAGC--ATT-TAGTTATTTTTGG-CAATTGGCCAATTGTGTAGTGCTT
droWil2 scf2_1100000004521:10181617-10181667 - CAGCTT-C--------TAAT----------------------C---AATCATCATAATGCT--GTACCAGAACAGCAGGTATAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13246:1620654-1620751 - TT---CCGGGCAGG--TGCCCAACTGGGCTACCTG-A-AACA-----ACT--TCTCATGCTGTGTACCAGAACAGCATGTATACATAAA----ACAAGACA------------A--------ATACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAAA------------------C
droMoj3 scaffold_6500:4295213-4295364 + ATATCC-AGGAAAACCCGCTCAACTAGGCT-GCTG-T-AAGA-----ACT--TCTCATGCTGTGTACCAGAACAGCAGGTATACAAAAA----CA-AAACAAAACTGATAACAGATATACATACAT-ATATACAGAATATTTATAATACAC-TATTTTAAGTTGAGGAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:15613705-15613737 + ------------------------------------------------------TCATGCTGTGTACCAGAACAGCAGGTATACAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTGTTC-C--------GGAT------------ATG-T-GGCTC---CATCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTATACA------------ATC----TTACACTTAACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGTAAA--T---------AAGT--AGAGATCAGGCATG--ATTATGTTGCGAGTGAGATCCCCGC-AAACTG--GGCGATCCCTCGATG--TCGGTTCTTGCACA---------------------------------TAGGCTTT-CATA-TACT----AG-AGC--GTAGTAGAAATCCTTGAAAGAAA------------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................TCAGGCATG--ATTATGTTGCGAGTGAGA........................................................................................................................................................2719.00900000042111000000
...TTC-C--------GGAT------------ATG-T-GGCTC---CATC..........................................................................................................................................................................................................................................................................................................................................2116.00660000000000000000
.............................................................................................................................................................................................................................................AACTG--GGCGATCCCTCGATG--TCGGT..................................................................................................................2515.00500000001013000000
..........................................................................................................................................................................................................................................................CCCTCGATG--TCGGTTCTTGCACA---------------------------------TAGGC...................................................................2814.00400000000002020000
...........................................................................................................................................................................................................................................................CCTCGATG--TCGGTTCTTGCAC..........................................................................................................2113.00320001000000000000
.......................................GCTC---CATCTGTGTCATGCT--GT...........................................................................................................................................................................................................................................................................................................................2113.00330000000000000000
..................................................................................................................................................................TTCGGCAGAGTAAA--T---------AAGT--AGAGATC...................................................................................................................................................................................2613.00300000012000000000
..................................................TGTGTCATGCT--GTACCCGAACAGCAGG.............................................................................................................................................................................................................................................................................................................2713.00300000012000000000
.............................................................................................................................................................................................................ATG--ATTATGTTGCGAGTGAGAT.......................................................................................................................................................2212.00200000000002000000
.................................TG-T-GGCTC---CATCTGTGTCATG.................................................................................................................................................................................................................................................................................................................................2112.00201000000001000000
............................................................................................................................................................................TAAA--T---------AAGT--AGAGATCAGGCAT.............................................................................................................................................................................2212.00200000000000002000
.........................................................................................................................................................................................................................TGCGAGTGAGATCCCCGC-AAACTG--GGCGA...................................................................................................................................2912.00200000002000000000
...................................................................................................................................................................................................................TTATGTTGCGAGTGAGATCCC....................................................................................................................................................2112.00210100000000000000
...........................................................................................................................................................TTTAAGTTTCGGCAGAGTAAA--T---------AAGT--..........................................................................................................................................................................................2612.00200000011000000000
................................................................................................................................................................................................................................................TG--GGCGATCCCTCGATG--TCGGTT.................................................................................................................2312.00200000000002000000
...........................................................................................................................................................................................................................................................................................................................................G-AGC--GTAGTAGAAATCCT............................1812.00200200000000000000
............................................................................................................................................................................................................................................AAACTG--GGCGATCCCTCGATG--TCGGT..................................................................................................................2612.00200000001001000000
..............................................................................................................................................................................................................TG--ATTATGTTGCGAGTGAGATCCCCGC-................................................................................................................................................2712.00200000020000000000
....................................................................................................................................................................................................................................TCCCCGC-AAACTG--GGCGATCCCTCGA...........................................................................................................................2612.00200020000000000000
............................................................................................................................................................................TAAA--T---------AAGT--AGAGATCAGGCATG--ATTA......................................................................................................................................................................2712.00200000000010010000
..................................................................................................................................................................................T---------AAGT--AGAGATCAGGCATG--..........................................................................................................................................................................1912.00200200000000000000
...........................................................................................................................................................................................................................................................CCTCGATG--TCGGTTCTTGCAT..........................................................................................................2111.00101000000000000000
....................................................................................................................................................................................................................TATGTTGCGAGTGAGA........................................................................................................................................................1611.00100000000100000000
...................................................................................................................................................................TCGGCAGAGTAAA--T---------AAGT--AGAGATA...................................................................................................................................................................................2511.00100000001000000000
............................................................................................................................................................................TAAA--T---------AAGT--AGAGATCAGGCAA.............................................................................................................................................................................2211.00100000000000001000
..................................................................................................................................................................................T---------AAGT--AGAGATCAGGCATG--A.........................................................................................................................................................................2011.00100000000000001000
..................................................................................................................................................................TTCGGCAGAGTAAA--T---------AAGT--AGAGAT....................................................................................................................................................................................2511.00100000000000010000
.....................................................................................................................................................................GGCAGAGTAAA--T---------AAGT--AGAGATCAGG................................................................................................................................................................................2611.00100000000000010000
..............................................................................................................................................................................AA--T---------AAGT--AGAGATCAGGCATG--..........................................................................................................................................................................2111.00101000000000000000
..................................................................................................................................................................TTCGGCAGAGTAAA--T---------AAGT--AGAGA.....................................................................................................................................................................................2411.00100000010000000000
..............................................................................................................................................................................................................................................................CGATG--TCGGTTCTTGCACA---------------------------------TAGGCT..................................................................2511.00101000000000000000
................................................TCTGTGTCATGCT--GTACCCGAACAGCAGG.............................................................................................................................................................................................................................................................................................................2911.00100000010000000000
............................................................................................................................................................TTAAGTTTCGGCAGAGTAAA--T---------AAGT--AGAGA.....................................................................................................................................................................................3011.00100000001000000000
..................................................................................................................................................................................................AGAGATCAGGCATG--ATTATGT...................................................................................................................................................................2111.00100000000001000000
................................................TCTGTGTCATGCT--GTACCCGG.....................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
......................................................................................................................................................................GCAGAGTAAA--T---------AAGT--AGAGATCAGGC...............................................................................................................................................................................2611.00100000001000000000
.......................................................................................................................................................................................................................................................GATCCCTCGATG--TCGGTTCTTGCACA---------------------------------........................................................................2611.00100000000001000000
.............................................................................................................................................................................................................................................................TCGATG--TCGGTTCTTGCACA---------------------------------TAGGCTT.................................................................2711.00100100000000000000
.........................................................................................................................................................................................................................TGCGAGTGAGATCCCCGC-AA..............................................................................................................................................2011.00100001000000000000
........................................................................................................................................................................................................................................CGC-AAACTG--GGCGATCCCTCGATG--TC.....................................................................................................................2611.00100000000001000000
...............................................................................................................................................................................................................G--ATTATGTTGCGAGTGAGATCCCC...................................................................................................................................................2411.00101000000000000000
..........................................................................................................................................................................................................................................................................................................................TT-CATA-TACT----AG-AGC--GTAGTAGAAATCCTT...........................3011.00100000010000000000
....TC-C--------GGAT------------ATG-T-GGCTC---CATCTGTGTCA...................................................................................................................................................................................................................................................................................................................................2711.00100000000100000000
...........................................................................................................................................................................................................................................................CCTCGATG--TCGGTTCTTGCACA---------------------------------TAGGC...................................................................2711.00100000000000010000
.............................................................................................................................................................................AAA--T---------AAGT--AGAGATCAGGC...............................................................................................................................................................................1911.00100000000001000000
.....................................................................................................................................................................GGCAGAGTAAA--T---------AAGT--AGAGATCAGGC...............................................................................................................................................................................2711.00100000000000001000
................................................................................................................................................................................................................................................TG--GGCGATCCCTCGATG--TCGGT..................................................................................................................2211.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................TA-TACT----AG-AGC--GTAGTAGAAATCCTT...........................2611.00100000000001000000
......................................................................................................................................................................................................................................................CGATCCCTCGATG--TCGGTTCTTGCA...........................................................................................................2511.00100000000001000000
................................................TCTGTGTCATGCT--GTACCCGAACAGC................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.....................................................................................................................................................................................................................................................................TCGGTTCTTGCACA---------------------------------TAGGC...................................................................1911.00100000010000000000
........................................................................................................................................................................AGAGTAAA--T---------AAGT--AGAGATCAGGCA..............................................................................................................................................................................2511.00100000000000010000
.............................................................................................................................................................................................................................................................................................................................................AGC--GTAGTAGAAATCCTTGA.........................2011.00100000000000001000
........................................................................................................................................................................................................................................................ATCCCTCGATG--TCGGTTCTTGCAC..........................................................................................................2411.00100100000000000000
........................................CTC---CATCTGTGTCATGCT--G............................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................TACT----AG-AGC--GTAGTAGAAATCCTTGA.........................2611.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................AGTAGAAATCCTTGAAAGAAA------------------.2111.00100000010000000000
..................................................................................................................................................................................................................ATTATGTTGCGAGTGAGATCCCCGC-AA..............................................................................................................................................2711.00100000000000100000
.....................................................................................................................................................................................................................................................GCGATCCCTCGATG--TCGGC..................................................................................................................1911.00110000000000000000
....TC-C--------GGAT------------ATG-T-GGCTC---CATCT.........................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
................................................TCTGTGTCATGCT--GTACC........................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................AGTAGAAATCCTTGAAAGAA....................2011.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................C--GTAGTAGAAATCCTTGAA........................1911.00110000000000000000
.......................................................CATGCT--GTACCCGAACA..................................................................................................................................................................................................................................................................................................................1711.00100000010000000000
............................................................................................................................................................................................................................................................CTCGATG--TCGGTTCTTGCACA---------------------------------TAGGC...................................................................2611.00100000010000000000
............................................................................................................................................TTATAGCGAAC-TATTTTAAGTTTCGGC....................................................................................................................................................................................................................2711.00100000001000000000
...................................................................................................................................................................TCGGCAGAGTAAA--T---------AAGT--AGAGATCA..................................................................................................................................................................................2611.00100000001000000000
.............................................................................................................................................................................................................................................................TCGATG--TCGGTTCTTGCACA---------------------------------TA......................................................................2211.00100000000001000000
...............................................ATCTGTGTCATGCT--GTACC........................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
..........................................................................................................................................................................................................................................................................TCTTGCACA---------------------------------TAGGCTTT-CATA-TACT----AG-A..............................................2811.00100000001000000000
..........................................................................................................................................................TTTTAAGTTTCGGCAGAGTAAA--T---------A...............................................................................................................................................................................................2411.00100000000100000000
.................................................................................................................................................................................................................................................G--GGCGATCCCTCGATG--TCGGT..................................................................................................................2111.00100000000000001000
.........................................TC---CATCTGTGTCATGCT--GTACCCGAA....................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
................................................................................................................................................................GTTTCGGCAGAGTAAA--T---------AAGT--AGAGA.....................................................................................................................................................................................2611.00100000010000000000
..................................................TGTGTCATGCT--GTACCCGAACAGCAG..............................................................................................................................................................................................................................................................................................................2611.00100000000001000000
........................................................................................................................................................................AGAGTAAA--T---------AAGT--AGAGATCAGGCAA.............................................................................................................................................................................2611.00100000000000010000
..GTTC-C--------GGAT------------ATG-T-GGCTC---C.............................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
...............................................................................................................................................................................................................................TGAGATCCCCGC-AAACTG--GGCGAT..................................................................................................................................2411.00100000000001000000
..............................................................................................................................................................................AA--T---------AAGT--AGAGATCAGGCATG--ATTA......................................................................................................................................................................2511.00100000001000000000
...........................................................................................................................................................................GTAAA--T---------AAGT--AGAGATCAGGC...............................................................................................................................................................................2111.00101000000000000000
.................................................................................................................................................................................................................................................G--GGCGATCCCTCGATG--TCGGTT.................................................................................................................2211.00100000000000001000
......................................................................................................................................................................................................................TGTTGCGAGTGAGATCCCCGC-AAACTG--GGCGA...................................................................................................................................3211.00100000010000000000
..................................................................................................................................................................................T---------AAGT--AGAGATCAGGCATG--ATTA......................................................................................................................................................................2311.00100000000100000000
..............................................................................................................................................................................................................TG--ATTATGTTGCGAGTGAGATCCCCG..................................................................................................................................................2611.00100000000001000000
....................................................................................................................................................................................................................................................................................................................................CT----AG-AGC--GTAGTAGAAATCCT............................2111.00100000000000100000
.......................................................................................................................................................................CAGAGTAAA--T---------AAGT--AGAGATC...................................................................................................................................................................................2111.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................ACT----AG-AGC--GTAGTAGAAATCCT............................2211.00100000000001000000
............................................................................................................................................................................TAAA--T---------AAGT--AGAGATCAGGCA..............................................................................................................................................................................2111.00100000000000010000
.................................................CTGTGTCATGCT--GTACCCGAAC...................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................C--GTAGTAGAAATCCTTGAAAG......................2111.00101000000000000000
...TTC-C--------GGAT------------ATG-T-GGCTC---CA............................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
.........................................................................................................................................................................................................................................................................TTCTTGCACA---------------------------------TAGGCTTT-CATA-TACT----..................................................2611.00100000001000000000
........................................................................................................................................................................................................................................................ATCCCTCGATG--TCGGT..................................................................................................................1611.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................AG-AGC--GTAGTAGAAATCCTTGAAAGA.....................2611.00101000000000000000
................................................................................................................................................................................................................................................TG--GGCGATCCCTCGATG--TCGG...................................................................................................................2111.00100000000000001000
...............................................................................................................................................................................A--T---------AAGT--AGAGATCAGGCA..............................................................................................................................................................................1811.00101000000000000000
.....................................................................................................................................................................................................................ATGTTGCGAGTGAGATCCC....................................................................................................................................................1911.00101000000000000000
.............................................................................................................................................................................................................................................AACTG--GGCGATCCCTCGATG--TC.....................................................................................................................2211.00100000000001000000
..............................................................................................................................................................................................................................................ACTG--GGCGATCCCTCGATG--TCGGT..................................................................................................................2411.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................TACT----AG-AGC--GTAGTAGAAATCCT............................2311.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................TACT----AG-AGC--GTAGTAGAA.................................1811.00100000000001000000
.............................................................................................................................................................................................................................................AACTG--GGCGATCCCTCGATG--TCGGA..................................................................................................................2511.00100000000001000000
............................................................................................................................................................................TAAA--T---------AAGT--AGAGATCAGGCATG--ATT.......................................................................................................................................................................2611.00100000010000000000
.......................................GCTC---CATCTGTGTCATGCT--GC...........................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.TGTTC-C--------GGAT------------ATG-T-GGCTC---C.............................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
........................................................................................................................................................TATTTTAAGTTTCGGCAGAGTAAA--..........................................................................................................................................................................................................2411.00100000000001000000
.........................................................................................................................................................ATTTTAAGTTTCGGCAGAGTAA.............................................................................................................................................................................................................2211.00100010000000000000
............................................................................................................................................................................................................................................................CTCGATG--TCGGTTCTTGCACA---------------------------------........................................................................2111.00100000000001000000
..........................................................................................................................................................................................................GGCATG--ATTATGTTGCGAGTG...........................................................................................................................................................2111.00100000000000001000
.........................................................................................................................................................................................................................TGCGAGTGAGATCCCCGC-AAACTG--GG......................................................................................................................................2611.00100010000000000000
.........................................................................AGCAGGTATACAAACC----ATTAT..........................................................................................................................................................................................................................................................................................2111.00100000100000000000
..........................................................................................................................................................................................................GGCATG--ATTATGTTGCGAGTGAGA........................................................................................................................................................2411.00100000000100000000
.............................................................................................................................................................................................................................................................TCGATG--TCGGTTCTTGCACA---------------------------------TAGGC...................................................................2511.00100000000000010000
...................................................................................................................................................................TCGGCAGAGTAAA--T---------AAGT--AGAGATC...................................................................................................................................................................................2511.00100000001000000000
..................................................................................................................................................................TTCGGCAGAGTAAA--T---------AAGT--AGAGAA....................................................................................................................................................................................2511.00100000000000010000
...............................................................................................................................................................AGTTTCGGCAGAGTAAA--T---------AAGT--AGAGA.....................................................................................................................................................................................2711.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................AG-AGC--GTAGTAGAAATCCTTGAAAG......................2511.00101000000000000000
......................................................................................................................................................................................................................................................CGATCCCTCGATG--TCGGTTCTTGCACA---------------------------------........................................................................2711.00100000010000000000
........................................................................................................................................................................................................................TTGCGAGTGAGATCCCCGC-AAACTG--GGA.....................................................................................................................................2811.00100000010000000000
...........................................................................................................................................................TTTAAGTTTCGGCAGAGTAAA--T---------AAGT--AGAGA.....................................................................................................................................................................................3111.00100000001000000000
.................GAT------------ATG-T-GGCTC---CAT...........................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
.......................................................................................................................................................................................................................................................GATCCCTCGATG--TCGG...................................................................................................................1620.50100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................ATCCTTGAAAGAAA------------------T1530.33100000000001000000
.........................................................................................................................................................................................................................................................TCCCTCGATG--TCGGC..................................................................................................................15130.08100000000000001000
droSec2
CTGTTC-C--------GGAT------------ATG-T-GGCTC---CATCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTATACA------------ATC----TTACACTTAACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGTAAA--T---------AAGT--AGAGATCAGGCATG--ATTATGTTGCGAGTGAGATCCCCGC-AAACTG--GGCGATCCCTCGATG--TCGGTTCTTGCACA---------------------------------TAGGCTTT-CATA-TACT----AG-AGC--GTAGTAGAAATCCTTGAAAGAAA------------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................ATG-T-GGCTC---CATCTGTGT.....................................................................................................................................................................................................................................................................................................................................1813.0030030
...................T------------ATG-T-GGCTC---CATCTGTGT.....................................................................................................................................................................................................................................................................................................................................1912.0020020
.........................................................................................................................................................ATTTTAAGTTTCGGCAGAGTAA.............................................................................................................................................................................................................2211.0010100
.......................................................................................................................................................................................................................GTTGCGAGTGAGATCCCC...................................................................................................................................................1811.0010010
...............................................................................................................................................................................................................G--ATTATGTTGCGAGTGAGAT.......................................................................................................................................................2011.0010100
..............................................................................................................................................................................................................TG--ATTATGTTGCGAGTGAGATCCC....................................................................................................................................................2411.0010100
.....................................................................................................................................................................................................................................CCCCGC-AAACTG--GGCGATCCCTC.............................................................................................................................2311.0011000
....................................................................................................................................................................................................................................TCCCCGC-AAACTG--GGCGATCCCTCGAT..........................................................................................................................2711.0010010
...................................................................................................................................................................................................................TTATGTTGCGAGTGAGATCCCCGC-................................................................................................................................................2411.0010010
.....C-C--------GGAT------------ATG-T-GGCTC---CATCTG........................................................................................................................................................................................................................................................................................................................................2111.0011000
............................................................................................................................................................................................AAGT--AGAGATCAGGCATG--ATTAT.....................................................................................................................................................................2311.0010010
...........................................................................................................................................................................GTAAA--T---------AAGT--AGAGATCAGGCA..............................................................................................................................................................................2211.0011000
................................ATG-T-GGCTC---CATCTGTGTCATGCT--.............................................................................................................................................................................................................................................................................................................................2411.0010010
..............................................................................................................................................................................................................TG--ATTATGTTGCGAGTGAGATT......................................................................................................................................................2211.0011000
....................................................................................................................................................................................................................................................................................................................................................AGTAGAAATCCTTGAAAGA.....................1911.0010010
................................................TCTGTGTCATGCT--GTACCCGAACAGCAG..............................................................................................................................................................................................................................................................................................................2811.0011000
dm3
CTGTTC-C--------GGAT------------CTA-T-GGCTC---CATCTGTGTCATGCT--GTACCCGAACAGCAGGTATAGAAACC----ATTATACA------------ATC----TTACACTTAACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGTAAA--T---------AAGT--AGAGATCAGGCATG--ATTATGTTCCGAGTGAGATCCCCGC-AACCTG--GGCGATCCCTCGATG--TCGGTTCTTGCACA---------------------------------TAGGCTTT-CATA-TACT----AG-AGC--GTAGTAGAAATCCTTGAACGTAA------------------TSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................T----AG-AGC--GTAGTAGAAATCCTTGAACG......................26136.00360000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000210001000000000000000000000000000000000000100100000000200010004000000520101200000000000000000000000000000000000000000000000000000000000000000000000050000121000000000000000000200000
.........................................................................................................................................................................................................................................................TCCCTCGATG--TCGGTTCTTGCACA---------------------------------........................................................................24126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000030504030000000000000000000000000000000000000000000000000000000000000000000100020000001000000000000000000600000
...............................................................................................................................................................................................................................................CTG--GGCGATCCCTCGATG--TCG....................................................................................................................21123.002300000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000130000000000000000000000000000000000000000010000020000000000000000000000000000000100001000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000000000000
........................................................................................................................................................................................................................TTCCGAGTGAGATCCCCGC-AACCTG--GGC.....................................................................................................................................28117.00170000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000100000000000000000000000300000003100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100400000
.................................................................................................................................................................TTTCGGCAGAGTAAA--T---------AAGT--AGAGA.....................................................................................................................................................................................25114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010104220010000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000
............................................................................................................................................................................................................................................................CTCGATG--TCGGTTCTTGCACA---------------------------------........................................................................21111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TCAGGCATG--ATTATGTTCCGAGTGAGA........................................................................................................................................................27111.00110000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001030004000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
..................................................................................................................................................................................T---------AAGT--AGAGATCAGGCATG--ATTATGT...................................................................................................................................................................26111.00110000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000001010000000000100000000000000000000000000000000000000000000000000000000000000000000000000001010000100000000000000000000100000
.............................................................................................................................................................................................................................................ACCTG--GGCGATCCCTCGATG--TCGGT..................................................................................................................25110.00100000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000001000000000000000100200000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CCTCGATG--TCGGTTCTTGCA...........................................................................................................20110.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TCGGTTCTTGCACA---------------------------------TAGGCTTT-CATA-..........................................................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010201230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TAGGCTTT-CATA-TACT----AG-AGC--..........................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000001000000000100000000000000000000100000000000000000000000000000000000000000000000000020000000000000000000000001000
........................................................................................................................................................................AGAGTAAA--T---------AAGT--AGAGATC...................................................................................................................................................................................2018.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................GCAGAGTAAA--T---------AAGT--AGAGAT....................................................................................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................ATCCCTCGATG--TCGGTTCTTGC............................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................CTCGATG--TCGGTTCTTGCACA---------------------------------TAGGC...................................................................2617.0070000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000200000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000100000
CTGTTC-C--------GGAT------------CTA-T-GGCTC---C.............................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000100000000000000000000000000000000000000000000010000000000000000000000000000000000000000000002000000000000000000000000100000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TACT----AG-AGC--GTAGTAGAAATCCTTGAACG......................2917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................TG--GGCGATCCCTCGATG--TCGGTTCT...............................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000100000001000100000000000100000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................TATTTTAAGTTTCGGCAGAGT...............................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010100000000000000000000000000000010000000000000000000000000000000000000000000000000000000100000000000
..................................................................................................................................................................................T---------AAGT--AGAGATCAGGCATG--ATTATG....................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000010010000101000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................T----AG-AGC--GTAGTAGAAATC..............................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003200000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................AGAGTAAA--T---------AAGT--AGAGATCAGGC...............................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................CCGAGTGAGATCCCCGC-AACCTG--GGCGA...................................................................................................................................2816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.................................................................................................................................................................................................................................................................TG--TCGGTTCTTGCACA---------------------------------TAGGCTTT-...............................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AACCTG--GGCGATCCCTCGATG--TCGG...................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000003000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................TCCGAGTGAGATCCCCGC-AACCTG--GGC.....................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000200000
..................AT------------CTA-T-GGCTC---CATCTGTGTC....................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001100000000000000000000000000010000000000000000000000100000
...............................................................................................................................................................................A--T---------AAGT--AGAGATCAGGCATG--ATTATGT...................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000200010000000000000000000000000100000
..............................................................................................................................................................................................................TG--ATTATGTTCCGAGTGAGA........................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................................................................................................................................................................................................................................................................................................TAGTAGAAATCCTTGAACGT.....................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TCTGTGTCATGCT--GTACCCGA.....................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000000000000100000000010000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................GGCGATCCCTCGATG--TCGGTT.................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................................TTATGTTCCGAGTGAGATCCC....................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000200000000000
.............................................................................................................................................................................................AGT--AGAGATCAGGCATG--ATTATGT...................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TAGTAGAAATCCTTGAACGTA....................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................................................AAGTTTCGGCAGAGTAAA--T---------AAGT--..........................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................T---------AAGT--AGAGATCAGGCATG--AT........................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................AG-AGC--GTAGTAGAAATCCT............................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..............................................................................................................................................................................................................................................CCTG--GGCGATCCCTCGATG--TC.....................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TCGATG--TCGGTTCTTGCACA---------------------------------T.......................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000010
.........................................................................................................................................................................................................................TCCGAGTGAGATCCCCGC-A...............................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................CCCCGC-AACCTG--GGCGATCCCTCGATG--.......................................................................................................................2714.0040000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TA-TACT----AG-AGC--GTAGTAGAAATCCTT...........................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................ATTATGTTCCGAGTGAGATCC.....................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................TG--GGCGATCCCTCGATG--TCGGT..................................................................................................................2214.0040000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TACT----AG-AGC--GTAGTAGAAATCCTT...........................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................AACCTG--GGCGATCCCTCGATG--TCGGT..................................................................................................................2614.0040000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
....................................................................................................................................................................................................................................................GGCGATCCCTCGATG--TCGGTTCTTGC............................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................TCAGGCATG--ATTATGTTCCGAGTGA..........................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................CGGTTCTTGCACA---------------------------------TAGGC...................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................TGAGATCCCCGC-AACCTG--GGCGAT..................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100
................................................................................................................................................................................................................................................TG--GGCGATCCCTCGATG--TCGGTT.................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000
..............................................................................................................................................................................................................TG--ATTATGTTCCGAGTGAGATC......................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................TTTTAAGTTTCGGCAGAGTAAA--T---------AAG.............................................................................................................................................................................................2613.0030000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TG--ATTATGTTCCGAGTGAGATCCCCGC-................................................................................................................................................2713.0030000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................T-CATA-TACT----AG-AGC--GTAGTAGAAATCCT............................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TATGTTCCGAGTGAGATCCCCGC-A...............................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000200000000000000000000000000
..................................................................................................................................................................TTCGGCAGAGTAAA--T---------AAGT--AGAGATC...................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TCCCTCGATG--TCGGTTCTTGCACA---------------------------------TA......................................................................2613.0030000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TTT-CATA-TACT----AG-AGC--GTAGTAGAAA................................2613.0030000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................ATG--TCGGTTCTTGCACA---------------------------------TAGG....................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGTTC-C--------GGAT------------CTA-T-GGCTC---C.............................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GATG--TCGGTTCTTGCACA---------------------------------TAGGCTT.................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................CGC-AACCTG--GGCGATCCCTCG............................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................TTCCGAGTGAGATCCCCGC-AACCTG--........................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.........................................................................................................................................................................................................................................GC-AACCTG--GGCGATCCCTCGA...........................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GATG--TCGGTTCTTGCACA---------------------------------........................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TCGATG--TCGGTTCTTGCA...........................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................A---------------------------------TAGGCTTT-CATA-TACT----AG-AGC--GTAGT.....................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TCGATG--TCGGTTCTTGCACA---------------------------------TAGGCT..................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................G-AGC--GTAGTAGAAATCCTTGAACG......................2413.0030000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
................................................................................................................................................................................................................................................................................................................................A-TACT----AG-AGC--GTAGTAGAAATCCTTG..........................2613.0030000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CCCTCGATG--TCGGTTCTTGC............................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................ATCTGTGTCATGCT--GTACCCG......................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010100
..............................................................................................................................................................................................................................................................CGATG--TCGGTTCTTGCACA---------------------------------T.......................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
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droEre2
CTGTTC-C--------GGAT------------CTG-T-GGCTC---GATCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTATACA------------GTC----TTACACTTTACACA-TCTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGTAAA--A---------AAGT--AGAGATCAGGCATG--ATTATGTTCCGAGCGAGATCCCCGC-AACCTG--GGCGATCCCTCGATG--TCGGTTCTTGCACA--------------------------------TTAGGCTTTCG-TA-TACTAAGTAG-AGC--GTAGTAGAAATCCTTGAACAAAA------------------TSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................TTTCG-TA-TACTAAGTAG-AGC--..........................................2012.0020110000
............................................................................................................................................................................................................................................................................................................................CG-TA-TACTAAGTAG-AGC--GTA.......................................2011.0010000010
.......................................................................................................................................................................................................................................................GATCCCTCGATG--TCGGTT.................................................................................................................1811.0010100000
...........................................................................................................................................................................................................................................................................CTTGCACA--------------------------------TTAGGCTTTCG-TA-T.........................................................2211.0010000100
................................................................................ATACAAACC----ATTATACA------------GTC----TTAC................................................................................................................................................................................................................................................................2411.0010100000
...............................................................................................................................................................................................................................................................GATG--TCGGTTCTTGCACA--------------------------------TTA......................................................................2111.0011000000
.........................................................................................................................................................ATTTTAAGTTTCGGCAGAGTAA.............................................................................................................................................................................................................2211.0010000100
...............................................ATCTGTGTCATGCT--GTACCT.......................................................................................................................................................................................................................................................................................................................2011.0010000100
......................................................................................................................................................................................................................................................................................................................................AAGTAG-AGC--GTAGTAGAAATCCTT...........................2411.0011000000
..........................................................................................................................................................................................................................................................CCCTCGATG--TCGGTTCTTGCACA--------------------------------T........................................................................2411.0011000000
............................................................T--GTACCCGAACAGCAGGTATA.........................................................................................................................................................................................................................................................................................................2111.0010001000
...................................................................................................................................................................................................................................................................................................................................ACTAAGTAG-AGC--GTAGTAGAAATCCT............................2611.0011000000
.........................................................................................................................................................ATTTTAAGTTTCGGCAGAGTA..............................................................................................................................................................................................................2111.0010100000
.........................................................................................................................................................ATTTTAAGTTTCGGCAGAGTAAA--A---------................................................................................................................................................................................................2411.0010000010
...............................................................................................................................................................................................................................CGAGATCCCCGC-AACCTG--GGCGATCCC...............................................................................................................................2711.0011000000
.....................................................................................................................................................AC-TATTTTAAGTTTCGGCAGAGT...............................................................................................................................................................................................................2311.0010001000
droYak3
CTGTTC-C--------GGAT------------CTG-T-GGCTC---CATCTGTGTCATGCT--GTACCCGAGCAGCAGGTATACAAACC----ATTATACA------------GTC----TTACACTTTACACA-ACTATTTATAGCGAAC-TATTTTAAGTTGCGGCAGAGTAAA--T---------AAGT--AGAGATCAGGCATG--ATTATGTTCCGAGCGAGATCCCCGC-AACATG--GGCGATCCCTCGATG--TCAGTTCTTGCACA--------------------------------TTAGGCTTT-CACA-TACTAATTAG-AGC--GTAGTAGAAATCCTTGAACAAAA------------------TSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................TCCCCGC-AACATG--GGCGATCCCTCGA...........................................................................................................................2618.00800000000008
.............................................................................................................................................................................................................ATG--ATTATGTTCCGAGCGAGATCCCC...................................................................................................................................................2611.00100100000000
.............................................................................................................................................................................................................ATG--ATTATGTTCCGAGCGAGA........................................................................................................................................................2111.00100010000000
.............................................................................................................................................................................AAA--T---------AAGT--AGAGATCAGGCAT.............................................................................................................................................................................2111.00101000000000
...........................................................................................................................................................................GTAAA--T---------AAGT--AGAGATCAGGC...............................................................................................................................................................................2111.00100100000000
........................................................ATGCT--GTACCCGAGCAGCAGC.............................................................................................................................................................................................................................................................................................................2111.00100100000000
................................................................................................................................................................................................................................................TG--GGCGATCCCTCGATG--TCAGT..................................................................................................................2211.00101000000000
.....................................................................................................................................................AC-TATTTTAAGTTGCGGCAGAGTAA.............................................................................................................................................................................................................2511.00100000010000
.........................................................................................................................................................ATTTTAAGTTGCGGCAGAGT...............................................................................................................................................................................................................2011.00110000000000
.........................................................................................................................................................................................................................................GC-AACATG--GGCGATCCCTCGA...........................................................................................................................2111.00100100000000
................................................................................................................................................AGCGAAC-TATTTTAAGTTGCGGCAGA.................................................................................................................................................................................................................2611.00100010000000
.........................................................................................................................................................................................................................................................................................................................TTT-CACA-TACTAATTAG-AGC--..........................................2011.00100000010000
.............................................................................................................................................TATAGCGAAC-TATTTTAAGTTG........................................................................................................................................................................................................................2211.00100000010000
........................................................................................................................................................................................................................................................................GTTCTTGCACA--------------------------------TTAGGCT..................................................................1811.00100100000000
...........................................................................................................................................................................................................................................................................................................................T-CACA-TACTAATTAG-AGC--GTA.......................................2111.00101000000000
..........................................................................................................................................................................AGTAAA--T---------AAGT--AGAGATCAGGCATG--..........................................................................................................................................................................2511.00110000000000
..............................................................................................................................................ATAGCGAAC-TATTTTAAGT..........................................................................................................................................................................................................................1911.00100100000000
....................................................................................................................................................................................................................................................................................................................................................AGTAGAAATCCTTGAACA......................1811.00110000000000
.............................................................................................................................................................................................................................................ACATG--GGCGATCCCTCGATG--TCAGTTC................................................................................................................2711.00100100000000
.....................................................................................................................................A-ACTATTTATAGCGAAC-TATT................................................................................................................................................................................................................................2111.00101000000000
...................................................GTGTCATGCT--GTACCCGAGCAGCAGGT............................................................................................................................................................................................................................................................................................................2711.00100000010000
.........................................................................................................................................................ATTTTAAGTTGCGGCAGAGTAA.............................................................................................................................................................................................................2211.00100000010000
....................................................................................................................................................................................................................................................................................................................................................AGTAGAAATCCTTGAACAAAA------------------T2211.00110000000000
......................................................................................................................................................................................................................TGTTCCGAGCGAGATCCCCGC-................................................................................................................................................2111.00101000000000
...........................................................................................................................................................................................................................................................................................................................T-CACA-TACTAATTAG-AGC--GTAGT.....................................2311.00100000010000
...............................................................................................................................................................................................................................................................................................................................................C--GTAGTAGAAATCCTTGAACA......................2111.00100100000000
........................................................................................................................................................................AGAGTAAA--T---------AAGT--AGAGATCAGGC...............................................................................................................................................................................2411.00101000000000
...........................................................................................................................................................................................................................................................................CTTGCACA--------------------------------TTAGGCTTT-CACA-TACT......................................................2511.00100100000000
droEug1
CACGGA-C--------GGGT------------CTG-T-GGCTC---CTCCTGTGTAGTGCT--GTACCAGAACAGCAGGTATACAAACC----TTTAAACA------------GTC----TTACACTTTACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGACAGAGTGAA--TAT-------AAGT--AGAGAACAGGCAAG--ATTATGTTCCGAGCGCGATGCCCGC-TTAATG--GGCAATCCCTCGATG--TCAGCTCATTCACA--------------------------------TTAGGCTTTTGATA-TACTTATTAGTAGC--GTAGAAGAAAT-CTTGAACAAAA------------------CSizeHit CountTotal NormTotal
No Reads
droBia1
CTGTGC-C--------GGAT------------CTG-T-GGCTC---CTACTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTTAACA------------GTC----TTACACTTTACAAA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGAAAA--T---------AAGT--AGAGAACAGGCATG--ATTATGTTCCGAGCGAGATCCCTAT-TAACT---GGTGATCCCTCGATG--TCGGTTCCTCCACA--------------------------------TTAGGCTTTTGATA-TACTTATTAGTAGC--GTAGTAGAAATCC-TGAACAAAA------------------CSizeHit CountTotal NormTotal
No Reads
droTak1
CTGTGC-C--------GGAT------------CTG-T-GGCTC---CTCCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTAAACA------------GTC----TTACACTTTACAAA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGTAAA--T---------AAGT--AGAGAACAGGCATG--ATTATGTTCCGAGCGAGATCCCAGC-CACCAA-TTGCGATCCCTCGATG--TCGGTTCTTTCACA--------------------------------TTAGGCTTTTGATA-TACTTATTAGTAGCGATTAGTAGAAATCCCTGAACAAAA------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
CTGTTA-A--------GGAT------------CTG-T-GGCTC---CTCCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAAAC----ATTAAACA--------------C----TTACACTTTACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGTATA--T---------AAGA--AGAGAAAAGGCATGTAATTACGTTCCGAGCGAGATCCCCGG-TCCCTG--GGAGATCCCTCGATG--TCGGTTCTTTCCAA--------------------------------TTAGGCTTTTGATA-TACTT---AGTAGC--GTAGTAGAAATCCTTGAACAAAA------------------CSizeHit CountTotal NormTotal
No Reads
droRho1
CTGTTA-C--------GAAT------------CTG-T-GGCTC---CTCCTGTGTCATGCT--GTACCAGAACAGCAGGTATACAAACC----ATTAAACA------------GTC----TTACACTTTACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGTAAA--T---------AAGT--AGAGAACAGGCATGTAATTATGTTCCGAGCGAGATCCCTGC-TCACTG--GGCGATCCCTCGATG--TCGGTTCTTTCCAA--------------------------------TTAGGCTTTTGATA-TACTT---AGTAGC--GTAGAAAAAATCCTTGAACAAAA------------------CSizeHit CountTotal NormTotal
No Reads
droFic1
CTGTGC-C--------GGAT----------ATCTG-C-GGCGC---CTCCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTAAACA------------GT-----TTACACTTTACACA-ACTATTTATAGCGGAC-TATTTTAAGTTTTGGCAGAGTAAT--T---------AAGAACAGAGAACAGGCAAAATATAATGTTCCGAGCGAGATCCCCGC-TCGCTG--GGCGATCCCTCGATG--TCAGTTCTTTCTAA--------------------------------TTAGGCTTTTGATA-AACTT---AGTAGC--GCAGTAGAAATTCTTGAACAAAA------------------GSizeHit CountTotal NormTotal
No Reads
droKik1
CCGATCCA--AAAACCGGAT------------ACGATGGGCTTCTCATCCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTGAACA------------GTC----TTACACTTTACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCAGAGAAAAATT---------AAGT--GGAGAACACGCAAA-AATTATGTTTCGAGGCCGATCCTCGG-A-CCGA--TGCGATCCCTTGATG--TTAGTTCTTTCAGA--------------------------------TTAGGCTTTTGATA-CACTT---AGTAGCTAGTAGCAGCGATCCTTGAACAAAA------------------TSizeHit CountTotal NormTotal
No Reads
droAna3
CTTATC-C--------GGAT------------CCG-T-GGCTTCACATCCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTGAACA------------GTC----TTACACTTTACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCGGAAAAAC--AAAAAGAAAACGGT--AGAGAGAACGCATA--ATTATGATGAGAGGTTAATATCCGC-CACTTG-CGGATATCCCTCGATATACTGGTTCTTTCCAA--------------------------------TTAGGCTTTTGATAATACTT---AGCAGC--ATAGTAGAGATGCTTGAACAAAA-------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................TTTGATAATACTT---AGCAGC--..........................................1912.002020000
..............................................................................GTATACAAACC----ATTGAACA------------GT.........................................................................................................................................................................................................................................................................2112.002020000
.........................................................................................................................................................................................AAACGGT--AGAGAGAACGC...............................................................................................................................................................................1812.002020000
...................................................................................................................................................................................AAAAGAAAACGGT--AGAGAGAAC.................................................................................................................................................................................2211.001000001
.....................................................................................AACC----ATTGAACA------------GTC----TTACACTTTACAC.......................................................................................................................................................................................................................................................2811.001010000
.........................................................................................................................................................................................................................................GC-CACTTG-CGGATATCCCTC.............................................................................................................................2011.001010000
...........................................................................................................................................................................AAAAC--AAAAAGAAAACGGT--AGAGAG....................................................................................................................................................................................2511.001000010
.................GAT------------CCG-T-GGCTTCACATCCTGTG......................................................................................................................................................................................................................................................................................................................................2311.001100000
................................................................................ATACAAACC----ATTGAACA------------GTC----....................................................................................................................................................................................................................................................................2011.001010000
..................................................................................ACAAACC----ATTGAACA------------GTC----TTACACT.............................................................................................................................................................................................................................................................2511.001010000
............................................................................................................................................................................AAAC--AAAAAGAAAACGGT--AGAGAGAA..................................................................................................................................................................................2611.001100000
.........................................................................................................................................................................................................................................GC-CACTTG-CGGATATCCCT..............................................................................................................................1911.001100000
................................................CCTGTGTCATGCT--GTACCCGAAC...................................................................................................................................................................................................................................................................................................................2311.001010000
...................................................................................................................................................................................................GAGAGAACGCATA--ATTATGATGAGG..............................................................................................................................................................2511.001010000
.......................................................................................................................................................................................................................................CCGC-CACTTG-CGGATATCCCC..............................................................................................................................2111.001010000
............................................................................................................................................................................................................................................CACTTG-CGGATATCCCTCG............................................................................................................................1911.001010000
.....................................................................................................................................................................................................................................................GATATCCCTCGATATACTGGTT.................................................................................................................2211.001010000
.....................................................................................................................................................................................................................ATGATGAGAGGTTAATATCC...................................................................................................................................................2011.001000100
..........................................................................................................................................................................AAAAAC--AAAAAGAAAACGGT--AGAG......................................................................................................................................................................................2411.001001000
.................................................................................................................................................................................................................................................................................................................................ATACTT---AGCAGC--ATAGTAGAGATGC.............................2520.501010000
droBip1
CGTGTC-C--------GGAT------------CCG-T-GGCTTCACATCCTGTGTCATGCT--GTACCCGAACAGCAGGTATACAAACC----ATTGAACA------------GTC----TTACACTTTACACA-ACTATTTATAGCGAAC-TATTTTAAGTTTCGGCGGAAAAAC--AAA------ACGGT--AGAGAGAACGCATG--ATTATGGTGAGGGGTCAGCACCCGC-AT-CTGGCGGACATCCCTCGATA-ACTGGTTCTTTCCAA--------------------------------TTAGGCTTTTGATAACACTT---AGTAGC--ATAGTAGAGATGCTTGAACAAAA-------------------SizeHit CountTotal NormTotal
No Reads
dp5
TTGCTC-C--------ACA----------------------------TCC--TGTCATGCT--GTACCAGAACAGCAGGTATACAAACAAAAAATTGAACA------------GTC----TTACACATTACACA-ACTATTTATAGAAAACGTATTTTAAGTTTTGGCAAGGAAAA--C---------AATT--AGAGAACACGCACT--ATAATGTTCAGGATGAGATCCCCACCTCACCA--GGTGGGCTCCCGATACGTTTGTTCTTA---ATGCGCCCATCCCATACCGCAAGAGAGGTGTTCTAGGGATTTTGATA-TACTT---GGTAGC--ATT-TAGTTATTTTTGG-CAATTGGCCAATTGTGTAGTGCTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................TAGGGATTTTGATA-TACTT---GG................................................2114.0040000000040
.......................................................................................................................................................................................................................................................................................................................GATTTTGATA-TACTT---GGTAG.............................................2013.0030000000030
...................................................................................................................................................AAACGTATTTTAAGTTTTGG.....................................................................................................................................................................................................................2013.0030000000030
...........................................................................................................................................................TTTAAGTTTTGGCAAGGAAAA--C---------AAT.............................................................................................................................................................................................2512.0020000000200
......................................................................................................................................................CGTATTTTAAGTTTTGGCAAGA................................................................................................................................................................................................................2212.0020000000020
...................................................................................................................................................................................................................................................................................................CGCAAGAGAGGTGTTCTAGG.....................................................................2012.0020000010010
.........................................................................................................................................................................................................................TCAGGATGAGATCCCCACCTCACCA--GGT.....................................................................................................................................2812.0020020000000
................................................................................................................................................................................................................................................................................................................................................................TGG-CAATTGGCCAATTGTGTAGTG...2412.0020200000000
.....................................................................................................................................................................GGCAAGGAAAA--C---------AATT--AGAGA.....................................................................................................................................................................................2112.0020100001000
.................................................................................................................................................................TTTTGGCAAGGAAAA--C---------AATT--AGAGA.....................................................................................................................................................................................2511.0010100000000
...CTC-C--------ACA----------------------------TCC--TGTCATGCT--GT...........................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................AATT--AGAGAACACGCACT--ATA.......................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................TGTTCAGGATGAGATCCCCACCTCA.............................................................................................................................................2511.0010000100000
...............................................................................................................................................................................................................T--ATAATGTTCAGGATGAGATCCCCACC................................................................................................................................................2711.0010100000000
................................................................................ATACAAACAAAAAATTGAACA------------GT.........................................................................................................................................................................................................................................................................2311.0010100000000
.........................................................................................................................................................................................................................................................................................CATCCCATACCGCAAGAGAGG..............................................................................2111.0010000000010
...............................................TCC--TGTCATGCT--GTACCAG......................................................................................................................................................................................................................................................................................................................1911.0011000000000
............................................................................................................................................................................................................................................................................................................GGTGTTCTAGGGATTTTGA.............................................................1911.0010000001000
...................................................................................................CA------------GTC----TTACACATTACACA-ACTA.................................................................................................................................................................................................................................................2311.0010010000000
............................................................................................................................................................................................................................................................................................................................TGATA-TACTT---GGTAGC--ATT-TAGTTATT..............................2711.0010100000000
..................................................................................................................................................................................................AGAGAACACGCACT--ATAATG....................................................................................................................................................................2011.0010000001000
...........................................................................................................................................................................................................................................................TCCCGATACGTTTGTTCTTA---ATGCGCCCA.................................................................................................2911.0010100000000
..........................................................................................................................................................................................................CGCACT--ATAATGTTCAGGATG...........................................................................................................................................................2111.0010000010000
.........................................................................................................................................................................................................................................................................................CATCCCATACCGCAAGAGAG...............................................................................2011.0010000001000
................................................................................................................................................................................................................................................................................................TACCGCAAGAGAGGTGTTCTAGTC....................................................................2411.0010100000000
................................................................................................................................................................................................................................................................................................................................................................TGG-CAATTGGCCAATTGTGTAGTGCTT2711.0010100000000
...............................................TCC--TGTCATGCT--GTACCAGAACAGC................................................................................................................................................................................................................................................................................................................2511.0010000000010
................................................................................................................................................................................................................................................................ATACGTTTGTTCTTA---ATGCG.....................................................................................................2011.0010000001000
....................................................................................................................................................................................................................................................................................................GCAAGAGAGGTGTTCTAGGG....................................................................2011.0010000001000
.................................................................................................................................................................................................................................................................TACGTTTGTTCTTA---ATGCGCCCATC...............................................................................................2511.0010100000000
..........................................................................................................................................................................................................................................................................................................GAGGTGTTCTAGGGATTTTGATA-TACT......................................................2711.0010000001000
............................................................................................................................................................................................................................................................................................................................TGATA-TACTT---GGTAGC--ATT-TAGTTA................................2511.0010100000000
..........................................................................................................................................................................................................................................................................TCTTA---ATGCGCCCATCCCATA..........................................................................................2111.0010000010000
...............................................................................................................................................................................................T--AGAGAACACGCACT--ATAATGT...................................................................................................................................................................2211.0010100000000
..............................................................................................................................................................................................................................................................................................................TGTTCTAGGGATTTTGATA-TACC......................................................2311.0010001000000
.......................................................................................................................................................................................................................................................................................................................................................AGTTATTTTTGG-CAATTGGC................2011.0010000000010
...........................................................CT--GTACCAGAACAGCAGGT............................................................................................................................................................................................................................................................................................................1911.0010100000000
.....C-C--------ACA----------------------------TCC--TGTCATGCT--G............................................................................................................................................................................................................................................................................................................................1811.0010000100000
......................................................................................................................................................................................................................................................................................................................GGATTTTGATA-TACTT---GGTAG.............................................2111.0010000000010
.........................................................................................................................................................................................................................TCAGGATGAGATCCCCACCTC..............................................................................................................................................2111.0010000001000
................................................................................ATACAAACAAAAAATTGAACA------------GTC----TT..................................................................................................................................................................................................................................................................2611.0010000100000
......................................................................................................................................................................................................................................................................................................AAGAGAGGTGTTCTAGGG....................................................................1811.0010100000000
..................................................................................................................................................................................................................................................................................ATGCGCCCATCCCATACCGCAAGAGA................................................................................2611.0010100000000
.........................................................................................................................................................................................................................TCAGGATGAGATCCCCACCTCACCA--GG......................................................................................................................................2711.0010100000000
...............................................................................................................................................................................................................................................................................................................GTTCTAGGGATTTTGATA-TACTT---GGTA..............................................2711.0010100000000
............................................................................................................................................................TTAAGTTTTGGCAAGGAAAA--..........................................................................................................................................................................................................2011.0010010000000
.............................................................................................................................................................................................................................................CACCA--GGTGGGCTCCCGATA.........................................................................................................................2011.0010000001000
...........................................................................................................................................................................................................................................................TCCCGATACGTTTGTTCTTA---ATGCGC....................................................................................................2611.0010100000000
...........................................................................................................................................................................................................................................................................................TCCCATACCGCAAGAGAGGTGTTCT........................................................................2511.0010100000000
............................................................................................................................................................................................................................................TCACCA--GGTGGGCTCCCGA...........................................................................................................................1911.0010000001000
........................................................................................................................................................TATTTTAAGTTTTGGCAAGGA...............................................................................................................................................................................................................2111.0010000000010
.................................................................................TACAAACAAAAAATTGAACA------------GTC----T...................................................................................................................................................................................................................................................................2411.0010100000000
..............................................................................................................................................................................................................................ATGAGATCCCCACCTCACCA--GGTGGGCT................................................................................................................................2811.0010000100000
........................................................................................................................................................................................................................................................GGCTCCCGATACGTTTGTTC................................................................................................................2011.0010010000000
........................................................................................................................................................................................................................TTCAGGATGAGATCCCCACCTCACCA--GG......................................................................................................................................2811.0010100000000
droPer2
TTGCTC-C--------ACA----------------------------TCC--TGTCATGCT--GTACCAGAACAGCAGGTATACAAACAAAAAATTGAACA------------GTC----TTACACATTACACA-ACTATTTATAGAAAACGTATTTTAAGTTTTGGCAAGGAAAA--C---------AATT--AGAGAACACGCACT--ATAATGTTCAGGATGAGATCCCCACCTCACCA--GGTGGGCTCCCGATACGTTTGTTCTTA---ATGCGCCCATCCCATACCGCAAGAGAGGTGTTCTAGGGATTTTGATA-TACTT---GGTAGC--ATT-TAGTTATTTTTGG-CAATTGGCCAATTGTGTAGTGCTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................CAAGGAAAA--C---------AATT--AGAGAAC...................................................................................................................................................................................2113.003000003
....................................................................................................................................................................................................................................................................................................................................................................CAATTGGCCAATTGTGTAGT....2013.003300000
................................................................................................................................................................................................................................................................ATACGTTTGTTCTTA---ATG.......................................................................................................1812.002200000
.........................................................................................................................................................ATTTTAAGTTTTGGCAAG.................................................................................................................................................................................................................1812.002200000
....................................................................................................................................................................................................................................................................................................GCAAGAGAGGTGTTCTAGG.....................................................................1912.002000002
...................................................................................................................................................................TTGGCAAGGAAAA--C---------AATT--AG........................................................................................................................................................................................2012.002000002
...............................................................................................TGAACA------------GTC----TTACACATT...........................................................................................................................................................................................................................................................1812.002200000
..................................................................................................................................................................................................................................................................................................................CTAGGGATTTTGATA-TACTT---GGTAGC--..........................................2612.002200000
...............................................................................................................................................................................................................................................................................................................GTTCTAGGGATTTTGATA-TAC.......................................................2112.002200000
..........................................................................................................................................................................................................................................................................................................................TTTGATA-TACTT---GGTAGC--..........................................1812.002200000
....TC-C--------ACA----------------------------TCC--TGTCATGCT--GTACC........................................................................................................................................................................................................................................................................................................................2312.002200000
..........................................................................................................................................................................................................................................................................................................GAGGTGTTCTAGGGATTTTG..............................................................2011.001000001
.............................................................................................................................................................................................................................................................................................................GTGTTCTAGGGATTTTGATA-T.........................................................2111.001000001
..................A----------------------------TCC--TGTCATGCT--GTACCAGAACA..................................................................................................................................................................................................................................................................................................................2411.001100000
....................................................................................................................................................................................................................................................................................................GCAAGAGAGGTGTTCTAGGG....................................................................2011.001000001
................................................................................................................................................................................................................................................................................................................TTCTAGGGATTTTGATA-TACTT---GG................................................2411.001010000
......................................................................................................................................................................................................................................................................................................AAGAGAGGTGTTCTAGGGATT.................................................................2111.001000001
....................................................................................................................................................................................................................................................................................................................................................................CAATTGGCCAATTGTGTA......1811.001001000
..................................................................................................................................................................................................................................................................................................................................TACTT---GGTAGC--ATT-TAGTTATTTT............................2411.001010000
..............................................................................................................................................................................................................................................................................................................TGTTCTAGGGATTTTGATA-TACTT---GG................................................2611.001010000
.......................................................CATGCT--GTACCAGAACAG.................................................................................................................................................................................................................................................................................................................1811.001100000
..................................................................................................................................................................................................................................................................................................................CTAGGGATTTTGATA-TACTT---GG................................................2211.001010000
..........................................................................................................................................................................................................................................................................................................GAGGTGTTCTAGGGATTTTGA.............................................................2111.001000001
.........................................................................................................................................................................AGGAAAA--C---------AATT--AGAGAACACGCACT--..........................................................................................................................................................................2611.001010000
.............................................................................................................................................................................................ATT--AGAGAACACGCACT--ATAATGTTCA................................................................................................................................................................2711.001001000
.................................................................................................................................................................................................................................................................TACGTTTGTTCTTA---ATGCGCCCATCCCA............................................................................................2811.001010000
....................................................................................................................................................................................................................................................................................................................................................................CAATTGGCCAATTGTGTAGTG...2111.001000001
...........................................................................................................................................................................................................................................................................................................AGGTGTTCTAGGGATTTTGAT............................................................2111.001000001
............................................................................................................................................................................................................................................................................................................GGTGTTCTAGGGATTTTGA.............................................................1911.001000001
.........................................................................................................................................................................................................................................................................................................AGAGGTGTTCTAGGGATTTTG..............................................................2111.001000001
............................................................................................AATTGAACA------------GTC----TTACAC..............................................................................................................................................................................................................................................................1811.001100000
...................................................................................................................................................................................................................................................................................................CGCAAGAGAGGTGTTCTAGGG....................................................................2111.001000001
...........................................................................................................................................................................GAAAA--C---------AATT--AGAGAACACGCACT--..........................................................................................................................................................................2411.001100000
.....C-C--------ACA----------------------------TCC--TGTCATGCT--GC...........................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................................................................................................................................................CAAGGAAAA--C---------AATT--AGAGAACACGCAC.............................................................................................................................................................................2711.001010000
..................................................................CCAGAACAGCAGGTATAC........................................................................................................................................................................................................................................................................................................1811.001100000
...................................................................................................................................................................................................................................................................................................CGCAAGAGAGGTGTTCTAGG.....................................................................2011.001000001
...................................................................................................................................................................................................................TAATGTTCAGGATGAGATCC.....................................................................................................................................................2011.001000001
....................................................................................................................................................................................................................................................................................................................................................T-TAGTTATTTTTGG-CAATTGGCCAAT............2611.001010000
..............................................................................................................................................................................................................................................................................................................................ATA-TACTT---GGTAGC--ATT-TAG...................................2011.001000001
.........................................................................................................................................................................................................................................................................................................AGAGGTGTTCTAGGGATTTT...............................................................2011.001000001
............................................................................................................................................................................................AATT--AGAGAACACGCACT--ATA.......................................................................................................................................................................2111.001010000
droWil2
CAGCTT-C--------TAAT----------------------C---AATCATCATAATGCT--GTACCAGAACAGCAGGTATAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................AT----------------------C---AATCATCATAATGCT--GTACCAG......................................................................................................................................................................................................................................................................................................................2511.00100010
...............................................................GTACCAGAACAGCAGGTAT..........................................................................................................................................................................................................................................................................................................1911.00100100
.......C--------TAAT----------------------C---AATCATCATAATGCT--GT...........................................................................................................................................................................................................................................................................................................................2311.00100010
...............................................................GTACCAGAACAGCAGGGT...........................................................................................................................................................................................................................................................................................................1820.50100010
droVir3
TT---CCGGGCAGG--TGCCCAACTGGGCTACCTG-A-AACA-----ACT--TCTCATGCTGTGTACCAGAACAGCATGTATACATAAA----ACAAGACA------------A--------ATACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACAAAA------------------CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................CA-----ACT--TCTCATGCTGTGTACCAGAA....................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
........................................CA-----ACT--TCTCATGCTGTGT...........................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
.................................TG-A-AACA-----ACT--TCTCATGCT...............................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.................GCCCAACTGGGCTACCTG-A-AACA-----ACT--T.......................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...........................................................CTGTGTACCAGAACAGCAG..............................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000001000000000000000000000000000000000000
droMoj3
ATATCC-AGGAAAACCCGCTCAACTAGGCT-GCTG-T-AAGA-----ACT--TCTCATGCTGTGTACCAGAACAGCAGGTATACAAAAA----CA-AAACAAAACTGATAACAGATATACATACAT-ATATACAGAATATTTATAATACAC-TATTTTAAGTTGAGGAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
------------------------------------------------------TCATGCTGTGTACCAGAACAGCAGGTATACAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:53 PM