dsi_23384

TGGTAGCCCGCAACAACTTTGGCACCGACAGGATATTCGTCACTGTGACGGTAGGCTGCGTGTCTATATCTGTGTCCTTAGGCGATCTATACACTATATGCTATATGCTATATATACCAGTTGATCTGTTGCTTGTGGCTGTCCCTCTATCGCTTTCGCTCACTAACCACTGCAATTCGTTCTCTCTTCTCTGCTTCTCTTTTTCCAGATTAAAATACCCAAAAAGAAAGAAGAATAAAGCTTATTAATACAATACAG ************************************************.....((((((((........(((.....(((((((.........(((.((((((.((.........(((.....)))..)).)))))))))......))))))).....)))........)))...))..........................)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
........................CCGACAGGATATTCGTCACTGTGA..................................................................................................................................................................................................................	24	0	1	2.00	2	2	0	0	0	0
.........................................................................................................................................GCTGTCCGTCTACCGCTTTCCCT..................................................................................................	23	3	1	1.00	1	0	1	0	0	0
..............................GGATATTCGTCACTGTGG..................................................................................................................................................................................................................	18	1	1	1.00	1	1	0	0	0	0
..........................................................................................................................................CTGTCCGTCTACCGCTTTCCCT..................................................................................................	22	3	1	1.00	1	0	1	0	0	0
...............................GATATTCGTCACTGTGG..................................................................................................................................................................................................................	17	1	1	1.00	1	0	0	0	1	0
.............................AGGATATTCGTCACTGTGAC.................................................................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0
......................................................................................CTATACACTATATGC.............................................................................................................................................................	15	0	3	0.33	1	0	0	0	0	1
...................................................................................................................ACCAGTTGATCGGTTGTT.............................................................................................................................	18	2	8	0.13	1	0	0	1	0	0
....................................................................TCTGGGTCCTTAGGTGCTC...........................................................................................................................................................................	19	3	15	0.07	1	0	0	1	0	0
.......................................................................................................................................................GCTCTCGCTCGCTAACC..........................................................................................	17	2	20	0.05	1	0	0	0	0	1

ACCATCGGGCGTTGTTGAAACCGTGGCTGTCCTATAAGCAGTGACACTGCCATCCGACGCACAGATATAGACACAGGAATCCGCTAGATATGTGATATACGATATACGATATATATGGTCAACTAGACAACGAACACCGACAGGGAGATAGCGAAAGCGAGTGATTGGTGACGTTAAGCAAGAGAGAAGAGACGAAGAGAAAAAGGTCTAATTTTATGGGTTTTTCTTTCTTCTTATTTCGAATAATTATGTTATGTC ************************************************.....((((((((........(((.....(((((((.........(((.((((((.((.........(((.....)))..)).)))))))))......))))))).....)))........)))...))..........................)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M023 head	M024 male body	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.........................................................................................................................................CGACAGGCAGATGGCGAAAG.....................................................................................................	20	2	1	2.00	2	2	0	0	0	0	0	0	0
........................................................................................................................................CCGACAGGCAGATGGCGAAAG.....................................................................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................AGCGGGTCATAGGTGACGTTAAG................................................................................	23	3	1	1.00	1	1	0	0	0	0	0	0	0
........................................................................................................................................CCGACAGGCAGATGGCGAAAGGG...................................................................................................	23	3	1	1.00	1	1	0	0	0	0	0	0	0
............................GTCCTATAAGCAGTGACACTG.................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0
...........................................................................................................................................................AGCGGGTCATAGGTGACGTTA..................................................................................	21	3	6	0.33	2	0	0	0	2	0	0	0	0
...........................................................................GGAACGCGCTAGATATGT.....................................................................................................................................................................	18	2	4	0.25	1	0	0	1	0	0	0	0	0
............................................................................GAACGCGCTAGATATGGGA...................................................................................................................................................................	19	3	5	0.20	1	0	0	1	0	0	0	0	0
.........................................................................................................................................CGACAGGCAGATGGCGAAAGG....................................................................................................	21	3	5	0.20	1	1	0	0	0	0	0	0	0
..........................................................................................................................................GACAGGCAGATGGCGAAAGGG...................................................................................................	21	3	6	0.17	1	1	0	0	0	0	0	0	0
.......................TTGCTGTTCTATGAGCAGTG.......................................................................................................................................................................................................................	20	3	8	0.13	1	0	0	0	0	0	1	0	0
........GCGTTGTTGAATCCGAG.........................................................................................................................................................................................................................................	17	2	10	0.10	1	0	0	0	0	1	0	0	0
...................................................................................................................TGGTCAACGAGACAACGGAGA..........................................................................................................................	21	3	13	0.08	1	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................GGTGTAATTTGCTGGGTTTT..................................	20	3	19	0.05	1	0	0	0	0	0	0	1	0
.......GGCGTTGTTGAAATCTT..........................................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................AATTTTCTGGGTTTT..................................	15	1	20	0.05	1	0	0	0	0	0	0	0	1
.................................................................................................................................................................................CCAAGAGTGAATAGACGAA..............................................................	19	3	20	0.05	1	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................................................GGTTTATCTCTCTTCTT.......................	17	2	20	0.05	1	0	0	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2r:12517579-12517836 -	dsi_23384	TGGTAGCCCGCAACAACTTTGGCACCGACAGGATATTCGTCACTGTGACGGTAGGC--TGCGTG--TCTAT-----------------ATCTGTGTCCTTAGGC-GA------------TCTATACA----------CTATA-------TGCTATATGCTATATAT-----------------------------------------------A--------CCAGT-------T--GATCTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-CA-CTAACC-ACTGCAATTCGT--------TCTCT----CT--TCT--CT---------GC------------------TTCT-----C---TTTTTCCAGATTAAAATACCCAAAAAGAAAGAA---G---AATAAAGCT-TATT--AA---------TAC-----AATACAG
droSec2	scaffold_1:9347504-9347761 -		TGGTAGCCCGCAACAACTTTGGCACCGACAGGATATTCGTCACTGTGACGGTAGGC--TGCGTG--TCTAT-----------------ATCTGTGTCCTTATGC-GA------------TCTATACA----------CTATA-------TGCTATATGCCATATAT-----------------------------------------------A--------CCAGT-------T--GATCTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-CA-CTAACC-ACTGCAATTCGT--------TCTCT----CT--TCT--CT---------GC------------------TTCT-----C---TTTTTCCAGATTAAAATACCCAAAAAGAAAGAA---G---AATAAAGCT-TATT--AA---------TAC-----AATACAA
dm3	chr2R:11847535-11847799 -		TGGTAGCCCGCAACAACTTTGGCACCGACAGGATATTCGTCACTGTGACGGTAGGC--TGCGTG--TCTAT-----------------ATATGTGTCCTTATGC-GA------------TCTATACA----------CTATATGATATATGCTATATGCTATATAT-----------------------------------------------A--------CCAGT-------T--GATCTGTTGCTCGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-CA-CTAACC-ACTGCAATTCGT--------TCTCT----CT--TCT--CT---------GC------------------TTCT-----C---TAATTCCAGATTAAAATACCCAAAAAGAAAGAA---G---AATAAAGCT-TATT--AA---------TAC-----AATACAA
droEre2	scaffold_4845:14010246-14010491 +		TGGTGGCCCGCAACAACTTCGGCACTGACAGGATATTCGTCACTGTGACGGTAGGC--TGCGTG--TCCCC-----------------ATCTGTGTCCTCATGG-GA------------TCTGTTCA----------TCATA-------C-------GCTATATAT-----------------------------------------------A--------CTAGT-------T--GACGTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-CA-CTAACC-ACTGCAATTCGT--------TCTCT----TT--TCT--CT---------GC------------------TTCT-----C---TTGTTCCAGATTAAAATACCCAAAAAGAAAGAA---G---AATAAAGCT-TATT--AA---------TA----------CAA
droYak3	2R:17134375-17134613 +		TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTCACCGTGACGGTAGGC--TGCGTG--TCTAT-----------------ATCTGTGTCCTTTTGG-GA------------TCTATATATCTATCTATACTAT-------------------------------------------------------------------------------------------------ACCTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-CA-CTAACC-ACTGCAATTCTT--------TCTCT----CTTTTCT--CT---------GC------------------TTCT-----C---TTATTCCAGATTAAAATACCCAAAAAGAAAGAA---G---AATAAAGCT-TATT--AA---------TA----------CAA
droEug1	scf7180000409672:758340-758586 -		TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTCACTGTCACGGTAGGC--TGTGTG--TCTAT-----------------ATCTGTGTCCTGTTGG-GATTCCAAAAAGGAT---------------------------------------------------------------------------------------------T--------CCATT-------T--GCTGTATTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-AA-CTAACC-TCTGCAATTCTT--------TCTCT----CT--TCT--CT---------GC------------------TTCTCTTTTTATTTTATTCCAGATTAAAATACCGAAAAAGAAAGAA---GAAGAATAAAGCT-TATT--AA---------TA----------CAA
droBia1	scf7180000302292:2022255-2022531 -		TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTCACTGTGACGGTACATAT-----ACATCCAT-----------------ATCTGTGTCCTTATGG-GAT------AGGGATCTGTAGATCTGCCGATCCTATAAGATCTTT--------------------------------------------------------------------GTAG-----CTCT---C--TTTCTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-TA-CTAACC-GCTGCAATTCTCTTCTCTCTTCTCT----CT--TCT--CT---------GC------------------TTCTCTTCTC---TTATTCCAGATTAAAATACCCAAAAAGAAAGAATCCG---AATAAAGCT-TATT--AA---------TA----------CAA
droTak1	scf7180000415795:713983-714208 +		TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTCACTGTGACGGTATATATC---TAC-------------------ATGTATCTGTATCCTC--GG-GA------------TCAATA----------------------------------------------------------------------------T----------G---CTCT---CCTT-----------TTCTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-AA-CTAACC-GCTGCAA----------------------CT--TCT--CT---------GC------------------TTCTCTTCTC---TTATTCCAGATTAAAATACCCAAAAAGAAAGAATCCG---AATAAAGCT-TATT--AA---------TA----------CAA
droEle1	scf7180000491107:851997-852235 -		TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTCACTGTGACGGTAGGC--TGAGTG--TCTAA-------------AC---CCCGAGTCTTT-CGG-GA------------TCTGTA----------------------------------------------------------------------------TGT---------CCCT------CTGT-------T--GCTCTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCTTCA-CTAACC-TCTGCAATTCT------------------CT--TCT--CT---------GC------------------TTTTCTTCTC---TTATTACAGATTAAAATACCCAAAAAGAAAGAA---GAAGCTTAAAGCC-TATT--AA---------TA--------TACAA
droRho1	scf7180000779911:249077-249305 +		TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTTACTGTGACGGTAGGC--CAAGTG--TCTAT-----------------ATCCGAGTCCTT-CGG-GA------------TCTGTA----------------------------------------------------------------------------TGT---------C--------CCCAT-------T--GCTCTGTTGCTTGTAGCTGTCC-C------------------TC----------------TATCGCT-TCGCT-AA-CTAACC-ACTGCAATTCT------------------CT--TCT--CT---------GC------------------TTCTCTTCTC---TTATTCCAGATTAAAATACCCAAAAAGAAAGAA---G---AATAAAGCT-TATT--AA---------TA----------CAA
droFic1	scf7180000453948:1098293-1098519 -		TGGTGGCCCGCAACAACTTCGGCACCGACAGGATATTCGTCACCGTGACGGTAGGC--CAAGAG-------------------------------TCCTT-TGG-CA------------TCTGTG----------------------------------------------------------------------------TGTTCGAGAAA-C------------C-------C--CCTCTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-AA-CTAACC-GCTGCAAATCTT--------TCTCTCTCTCT--TCT--CT---------GC------------------TTCT-----C---TAATTCCAGATTAAAATACCCAAAAAGAAAGAT---G---AATAAAGCC-TATT--AA---------TA----------CAA
droKik1	scf7180000302385:1079506-1079753 -		TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTCACTGTAACGGTAGGATTTTCGTA--ACAGT-----------------ATCTGTGTCCTTC---------------------------------------------------------------------------------------------------------------------GTTG-----CTCTCTC-TATCTCTGTTGCTTGTGGCTGTCCCC------------------TC----TGGA-------TAAACGCTTTCGCTTAA-CTAACC-GCTGCACTTCTC--------TCTCTCTCT-C--TCTCTCT---------GC------------------TTCTCTTCTTCTCTTATTACAGATTAAGATACCCAAAAAGAAAGAA---------TAAAGCTTTATT--AA---------TAC-----AA-AAAA
droAna3	scaffold_13266:11877190-11877411 +		TGGTGGCTCGCAATAACTTTGGCACTGACAGGATATTCGTGACCGTCACGGTAGGGATCT--------------------------------CCGTTCTC-C-GGAG------------AGTGTG----------------------------------------------------------------------------TGTT------------------GAGT-------T--CATGTTTCGC-CGTGGCTGCTC-C------------------T-----------------TAATGCTTTCGCT-AATCTAACC-G---CACT----------------------T--TCT--CTGCCTCTAT-TCTCTTCTAT----------TTCT-----T---TTTCTCTAGATTAAAATACCCAAAAAGAAAGAA---------TAATGCT-TGTT--AA---------CAC-----AAAACA-
droBip1	scf7180000396547:600259-600480 -		TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTGACCGTCACGGTAGGGACCT--------------------------------CCGTTCTC-C-GGAG------------AGTGTG----------------------------------------------------------------------------TGTT------------------GAGT-------T--CATGTTTCGC-TGTGGCTGCTC-C------------------T-----------------TAATGCTTTCGCTTAATCTAACC-ACTGCTT-------------TCTCT----CC--TTT--AT---------TCTCTTCTAT----------TTCT---------TTTCTTTAGATTAAAATACCCAAAAAGAAAGAA---------TAATGCT-TGTT--AA---------CAC-----AAAACA-
dp5	3:18978326-18978636 +		TTGTGGCACGTAACAACTTTGGCACGGACAGGATATTTGTTACCGTCACGGTAAGG---------------------------------------TTCCT-TGG-GA------------TATACATATATAAAT------------------------------ATACTCGAACATACCTCCACGAGTAAACATATGAATCT----------G---TTGTTG-----TT---------TGCTATCGCTTGTGGCTGTTC-CTGAAAGTCTTGCG-TCTCTCTCTCTGTATGTGCGCCAAATGCTTTCGCT-AA-CTAACA-TCTGCTATTATT--------TCTCTTTT-CT--TCT--CTGCTTC---TGC------------------TTCTCTTCTCTTTTTTATCTAGATTAAAATCCCCAAAAAGAAAGAA---------TAAAGCT-TATT--AATT--------AT-----TAAACAT
droPer2	scaffold_242:10029-10339 +		TTGTGGCACGTAACAACTTTGGCACGGACAGGATATTTGTTACCGTCACGGTAAGG---------------------------------------TTCCT-TGG-GA------------TATACATATATAAAT------------------------------ATACTCGAACATACCTCTACGAGTATACATATGAATCT----------G---TTGTTG-----TT---------TGCTATCGCTTGTGGCTGTTC-CTGAAAGTCTTGCG-TCTCTCTCTCTGTATGTGCGCCAAATGCTTTCGCT-AA-CTAACA-TCTGCTATTATT--------TCTCTTTT-CT--TCT--CTGCTTC---TGC------------------TTCTCTTCTCTTTTTTATCTAGATTAAAATCCCCAAAAAGAAAGAA---------TAAAGCT-TATT--AATT--------AT-----TAAACAT
droWil2	scf2_1100000004558:864146-864375 -		TTGTTGCTCGCAACAACAACGGCACGGACAGGATATTCGTGACTGTAACGGTAGGTTCTT---AC-------------------AT--------ATTTTT-T-GGAG------------GC--------------------------------------------------------------------AAT---------------------CTTT------GTGT-------T--AATTGTTTGCGTGTTCATATTT-T------------------TT----------------TAACGCTTCTGCT-TA-TTAACTTGCCGCAATTCTT--------TATCT----TC--TTT--CT---------CT------------------TCCT------------CCTTAGATTAAAATACCGAAAAAGAAAGAAAGCTTAGCTTAAAGCT-TATT--AATTA-------AC-----TCTACAT
droVir3	scaffold_12875:17282450-17282689 -	dvi_7456	TTGTTGCCCGCAACGACTTTGGAACGGACAGAATATTCGTCACCATTACAGTACGTACTGCCTA--CGAAT-----------------------GCCCAT-T-------------------------------------------------------------------------------------------------------------------------GTGT----------TATGTGTTTGTTGTCGCTGTAC-CTGAATGTTTGGCTATTTATC----------------TAATGCTTTTGCT-AA-CTAACC-TTTGCTATTCTC--------TCTCTCTCT---------CTT--------TT-------------TACGCTTTT-----C---TTTTTCTAGATTAAAACGCCCAAAAAGAAAGAA---------TAAAGCC-TATTTCAAA--------TATA----TTTACTT
droMoj3	scaffold_6496:10727930-10728192 +		TTGTTGCACGCAACGACTTTGGCACGGATAGAATATTCGTCACAATTACAGTACGTACTGCCTA--TGAATATCTGTTTGTGTTATGTGT----------------------------------------------------------------------------------------------------------------------------------------------------TTGTATCTGCTGTCGCTGTAC-CTGAATGTCTTGCTATTGATC----------------TAATGCTTTTGCT-AA-CTAACC-TTTGCTATTCTC--------TCTCTCTCT-C--TCTCTCT---------CTTTCTCTATTTCTTTATG--------------CTTTTCTAGATTAAAACGCCCAAAAAGAAAGAA---------TAAAGCT-TATTTCAATT--------ATATTTATATACAT
droGri2	scaffold_15245:16797942-16798209 -		TAGTCGCACGCAATGACTTTGGAACGGACAGAATATTCGTCACCATTACAGTACGTACTGCCTA------T-------------ATGTGTTTAGCTCTTGATGT-TA------------------------------------------------------------------------------------------------------------------------TT------AAGTACTGTAGC-TGTTGCTGTCC-CTGAATATTAAGCTATTTCTC----------------TAACGCTTATGCT-AA-CTAACC-ATTGCTATTCTC--------TCTCTCTCT-C--TCTCTCT--CTCT--TGT-------------TACGCTTTT-----C---TCTTTTTAGATTAAAACGCCCAAAAAGAAAGAA---------TAAAGCT-TATTTCAATTATCTTAATATA----TATAAAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TGGTAGCCCGCAACAACTTTGGCACCGACAGGATATTCGTCACTGTGACGGTAGGC--TGCGTG--TCTAT-----------------ATCTGTGTCCTTAGGC-GA------------TCTATACA----------CTATA-------TGCTATATGCTATATAT-----------------------------------------------A--------CCAGT-------T--GATCTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-CA-CTAACC-ACTGCAATTCGT--------TCTCT----CT--TCT--CT---------GC------------------TTCT-----C---TTTTTCCAGATTAAAATACCCAAAAAGAAAGAA---G---AATAAAGCT-TATT--AA---------TAC-----AATACAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................CCGACAGGATATTCGTCACTGTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GGATATTCGTCACTGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GATATTCGTCACTGTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................AGGATATTCGTCACTGTGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................CTATACA----------CTATA-------TGC.............................................................................................................................................................................................................................................................................................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TGGTAGCCCGCAACAACTTTGGCACCGACAGGATATTCGTCACTGTGACGGTAGGC--TGCGTG--TCTAT-----------------ATCTGTGTCCTTATGC-GA------------TCTATACA----------CTATA-------TGCTATATGCCATATAT-----------------------------------------------A--------CCAGT-------T--GATCTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-CA-CTAACC-ACTGCAATTCGT--------TCTCT----CT--TCT--CT---------GC------------------TTCT-----C---TTTTTCCAGATTAAAATACCCAAAAAGAAAGAA---G---AATAAAGCT-TATT--AA---------TAC-----AATACAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................GCACCGACAGGATATTCGTCACTGTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACCCAAAAAGAAAGAA---G---AAT.......................................	24	1	1.00	1	0	1	0	0
...................TGGCACCGACAGGATATTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
TGGTAGCCCGCAACAACTTTGGCACCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
..............AACTTTGGCACCGACAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0

dm3

TGGTAGCCCGCAACAACTTTGGCACCGACAGGATATTCGTCACTGTGACGGTAGGC--TGCGTG--TCTAT-----------------ATATGTGTCCTTATGC-GA------------TCTATACA----------CTATATGATATATGCTATATGCTATATAT-----------------------------------------------A--------CCAGT-------T--GATCTGTTGCTCGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-CA-CTAACC-ACTGCAATTCGT--------TCTCT----CT--TCT--CT---------GC------------------TTCT-----C---TAATTCCAGATTAAAATACCCAAAAAGAAAGAA---G---AATAAAGCT-TATT--AA---------TAC-----AATACAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................TTTGGCACCGACAGGATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCAAAAAGAAAGAA---G---AAT.......................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGGTAGCCCGCAACAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....AGCCCGCAACAACTTTGGCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAGAA---G---AATAAAGCT-................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ACTTTGGCACCGACAGGATATTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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droEre2

TGGTGGCCCGCAACAACTTCGGCACTGACAGGATATTCGTCACTGTGACGGTAGGC--TGCGTG--TCCCC-----------------ATCTGTGTCCTCATGG-GA------------TCTGTTCA----------TCATA-------C-------GCTATATAT-----------------------------------------------A--------CTAGT-------T--GACGTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-CA-CTAACC-ACTGCAATTCGT--------TCTCT----TT--TCT--CT---------GC------------------TTCT-----C---TTGTTCCAGATTAAAATACCCAAAAAGAAAGAA---G---AATAAAGCT-TATT--AA---------TA----------CAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCCAAAAAGAAAGAA---G---AATAAAGCT-................................	29	1	2.00	2	0	0	0	0	2	0	0
.....................GCACTGACAGGATATTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAAGAA---G---AATAAAGCT-TATT--..........................	25	1	1.00	1	0	0	0	0	0	1	0
.................TTCGGCACTGACAGGATATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.................TTCGGCACTGACAGGATATTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...........AACAACTTCGGCACTGACAGGATATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA---G---AATAAAGCT-TATT--AA---------TA----------CA.	23	1	1.00	1	0	0	0	0	0	1	0
...................CGGCACTGACAGGATATTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
..............AACTTCGGCACTGACAGGATATTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.....GCCCGCAACAACTTCGGCACTGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..........CAACAACTTCGGCACTGACAGGATATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0

droYak3

TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTCACCGTGACGGTAGGC--TGCGTG--TCTAT-----------------ATCTGTGTCCTTTTGG-GA------------TCTATATATCTATCTATACTAT-------------------------------------------------------------------------------------------------ACCTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-CA-CTAACC-ACTGCAATTCTT--------TCTCT----CTTTTCT--CT---------GC------------------TTCT-----C---TTATTCCAGATTAAAATACCCAAAAAGAAAGAA---G---AATAAAGCT-TATT--AA---------TA----------CAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................CAGGATATTCGTCACCGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCCAAAAAGAAAGAA---G---AATA......................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............ACAACTTTGGCACTGACAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................TATCTATACTAT-------------------------------------------------------------------------------------------------ACCTGTTG...............................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAGAA---G---AATAAAGCT-................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................GGCACTGACAGGATATTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAAGAA---G---AATAAAGCT-T...............................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............ACTTTGGCACTGACAGGATATTCGTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................TTTGGCACTGACAGGATATTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTCACTGTCACGGTAGGC--TGTGTG--TCTAT-----------------ATCTGTGTCCTGTTGG-GATTCCAAAAAGGAT---------------------------------------------------------------------------------------------T--------CCATT-------T--GCTGTATTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-AA-CTAACC-TCTGCAATTCTT--------TCTCT----CT--TCT--CT---------GC------------------TTCTCTTTTTATTTTATTCCAGATTAAAATACCGAAAAAGAAAGAA---GAAGAATAAAGCT-TATT--AA---------TA----------CAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTCACTGTGACGGTACATAT-----ACATCCAT-----------------ATCTGTGTCCTTATGG-GAT------AGGGATCTGTAGATCTGCCGATCCTATAAGATCTTT--------------------------------------------------------------------GTAG-----CTCT---C--TTTCTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-TA-CTAACC-GCTGCAATTCTCTTCTCTCTTCTCT----CT--TCT--CT---------GC------------------TTCTCTTCTC---TTATTCCAGATTAAAATACCCAAAAAGAAAGAATCCG---AATAAAGCT-TATT--AA---------TA----------CAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTCACTGTGACGGTATATATC---TAC-------------------ATGTATCTGTATCCTC--GG-GA------------TCAATA----------------------------------------------------------------------------T----------G---CTCT---CCTT-----------TTCTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-AA-CTAACC-GCTGCAA----------------------CT--TCT--CT---------GC------------------TTCTCTTCTC---TTATTCCAGATTAAAATACCCAAAAAGAAAGAATCCG---AATAAAGCT-TATT--AA---------TA----------CAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTCACTGTGACGGTAGGC--TGAGTG--TCTAA-------------AC---CCCGAGTCTTT-CGG-GA------------TCTGTA----------------------------------------------------------------------------TGT---------CCCT------CTGT-------T--GCTCTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCTTCA-CTAACC-TCTGCAATTCT------------------CT--TCT--CT---------GC------------------TTTTCTTCTC---TTATTACAGATTAAAATACCCAAAAAGAAAGAA---GAAGCTTAAAGCC-TATT--AA---------TA--------TACAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTTACTGTGACGGTAGGC--CAAGTG--TCTAT-----------------ATCCGAGTCCTT-CGG-GA------------TCTGTA----------------------------------------------------------------------------TGT---------C--------CCCAT-------T--GCTCTGTTGCTTGTAGCTGTCC-C------------------TC----------------TATCGCT-TCGCT-AA-CTAACC-ACTGCAATTCT------------------CT--TCT--CT---------GC------------------TTCTCTTCTC---TTATTCCAGATTAAAATACCCAAAAAGAAAGAA---G---AATAAAGCT-TATT--AA---------TA----------CAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGGTGGCCCGCAACAACTTCGGCACCGACAGGATATTCGTCACCGTGACGGTAGGC--CAAGAG-------------------------------TCCTT-TGG-CA------------TCTGTG----------------------------------------------------------------------------TGTTCGAGAAA-C------------C-------C--CCTCTGTTGCTTGTGGCTGTCC-C------------------TC----------------TATCGCTTTCGCT-AA-CTAACC-GCTGCAAATCTT--------TCTCTCTCTCT--TCT--CT---------GC------------------TTCT-----C---TAATTCCAGATTAAAATACCCAAAAAGAAAGAT---G---AATAAAGCC-TATT--AA---------TA----------CAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTCACTGTAACGGTAGGATTTTCGTA--ACAGT-----------------ATCTGTGTCCTTC---------------------------------------------------------------------------------------------------------------------GTTG-----CTCTCTC-TATCTCTGTTGCTTGTGGCTGTCCCC------------------TC----TGGA-------TAAACGCTTTCGCTTAA-CTAACC-GCTGCACTTCTC--------TCTCTCTCT-C--TCTCTCT---------GC------------------TTCTCTTCTTCTCTTATTACAGATTAAGATACCCAAAAAGAAAGAA---------TAAAGCTTTATT--AA---------TAC-----AA-AAAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGGTGGCTCGCAATAACTTTGGCACTGACAGGATATTCGTGACCGTCACGGTAGGGATCT--------------------------------CCGTTCTC-C-GGAG------------AGTGTG----------------------------------------------------------------------------TGTT------------------GAGT-------T--CATGTTTCGC-CGTGGCTGCTC-C------------------T-----------------TAATGCTTTCGCT-AATCTAACC-G---CACT----------------------T--TCT--CTGCCTCTAT-TCTCTTCTAT----------TTCT-----T---TTTCTCTAGATTAAAATACCCAAAAAGAAAGAA---------TAATGCT-TGTT--AA---------CAC-----AAAACA-	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................GACAGGATATTCGTGACCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	6.00	6	0	0	0	0	0	6
..................TTGGCACTGACAGGATATTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	1	0	0	0	0	2
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA---------TAATGCT-TGTT--AA---------CAC-----A......	20	1	3.00	3	0	0	0	0	0	3
...........................ACAGGATATTCGTGACCGTCACGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAA---------TAATGCT-TGTT--AA---------CAC-----A......	24	1	2.00	2	0	0	0	0	0	2
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAA---------TAATGCT-TGTT--AA---------CAC-----A......	22	1	2.00	2	0	0	0	0	0	2
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAA---------TAATGCT-TGTT--AA---------CAC-----A......	23	1	2.00	2	0	0	0	0	0	2
.................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCCAAAAAGAAAGAA---------TAATGC..................................	25	1	1.00	1	0	0	0	0	0	1
.................TTTGGCACTGACAGGATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAA---------TAATGCT-TGTT--AA---------CA.............	23	1	1.00	1	0	0	0	0	0	1
.GGTGGCTCGCAATAACTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................TTGGCACTGACAGGATATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............................GGATATTCGTGACCGTCACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..................TTGGCACTGACAGGATATTCGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..........................GACAGGATATTCGTGACCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
................................ATATTCGTGACCGTCACGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................TGGCACTGACAGGATATTCGTGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....GGCTCGCAATAACTTTGGCACTGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..........................GACAGGATATTCGTGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
..............AACTTTGGCACTGACAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.......................ACTGACAGGATATTCGTGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................TTGGCACTGACAGGATATTCGTGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.................TTTGGCACTGACAGGATATTCGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
.............TAACTTTGGCACTGACAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...............ACTTTGGCACTGACAGGATATTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..............................GGATATTCGTGACCGTCACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
..............AACTTTGGCACTGACAGGATATTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
..GTGGCTCGCAATAACTTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................TTGGCACTGACAGGATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
........................CTGACAGGATATTCGTGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
........................CTGACAGGATATTCGTGACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.........................TGACAGGATATTCGTGACCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...............ACTTTGGCACTGACAGGATATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA---------TAATGCT-TGTT--AA---------CAC-----AAAACA-	25	1	1.00	1	0	0	0	0	0	1
.................TTTGGCACTGACAGGATATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........CGCAATAACTTTGGCACTGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droBip1

TGGTGGCCCGCAACAACTTTGGCACTGACAGGATATTCGTGACCGTCACGGTAGGGACCT--------------------------------CCGTTCTC-C-GGAG------------AGTGTG----------------------------------------------------------------------------TGTT------------------GAGT-------T--CATGTTTCGC-TGTGGCTGCTC-C------------------T-----------------TAATGCTTTCGCTTAATCTAACC-ACTGCTT-------------TCTCT----CC--TTT--AT---------TCTCTTCTAT----------TTCT---------TTTCTTTAGATTAAAATACCCAAAAAGAAAGAA---------TAATGCT-TGTT--AA---------CAC-----AAAACA-	Size	Hit Count	Total Norm	Total
No Reads

dp5

TTGTGGCACGTAACAACTTTGGCACGGACAGGATATTTGTTACCGTCACGGTAAGG---------------------------------------TTCCT-TGG-GA------------TATACATATATAAAT------------------------------ATACTCGAACATACCTCCACGAGTAAACATATGAATCT----------G---TTGTTG-----TT---------TGCTATCGCTTGTGGCTGTTC-CTGAAAGTCTTGCG-TCTCTCTCTCTGTATGTGCGCCAAATGCTTTCGCT-AA-CTAACA-TCTGCTATTATT--------TCTCTTTT-CT--TCT--CTGCTTC---TGC------------------TTCTCTTCTCTTTTTTATCTAGATTAAAATCCCCAAAAAGAAAGAA---------TAAAGCT-TATT--AATT--------AT-----TAAACAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCCCCAAAAAGAAAGAA---------TA......................................	23	1	2.00	2	0	1	0	0	0	1	0	0	0	0
...............ACTTTGGCACGGACAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2	0	0	0	0
....................GGCACGGACAGGATATTTGTTAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	2	0
..........................GACAGGATATTTGTTACCGTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................TTGGCACGGACAGGATATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
TTGTGGCACGTAACAACTTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
TTGTGGCACGTAACAACTTTGGCACGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............AACTTTGGCACGGACAGGATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............ACTTTGGCACGGACAGGATATTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......CACGTAACAACTTTGGCACGGACAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........CGTAACAACTTTGGCACGGACAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............AACTTTGGCACGGACAGGATATTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........CGTAACAACTTTGGCACGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................TTGGCACGGACAGGATATTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TGAAAGTCTTGCG-TCTCTCTC..........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........TAACAACTTTGGCACGGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CTTTGGCACGGACAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCCCCAAAAAGAAAGAA---------........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................TGGCACGGACAGGATATTTGTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...................TGGCACGGACAGGATATTTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.................TTTGGCACGGACAGGATATTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................AGGATATTTGTTACCGTCACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............................GGATATTTGTTACCGTCACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............ACTTTGGCACGGACAGGATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GTAACAACTTTGGCACGGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........AACAACTTTGGCACGGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......ACGTAACAACTTTGGCACGGACAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........GTAACAACTTTGGCACGGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CTTTGGCACGGACAGGATATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................GATATTTGTTACCGTCACGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TTGTGGCACGTAACAACTTTGGCACGGACAGGATATTTGTTACCGTCACGGTAAGG---------------------------------------TTCCT-TGG-GA------------TATACATATATAAAT------------------------------ATACTCGAACATACCTCTACGAGTATACATATGAATCT----------G---TTGTTG-----TT---------TGCTATCGCTTGTGGCTGTTC-CTGAAAGTCTTGCG-TCTCTCTCTCTGTATGTGCGCCAAATGCTTTCGCT-AA-CTAACA-TCTGCTATTATT--------TCTCTTTT-CT--TCT--CTGCTTC---TGC------------------TTCTCTTCTCTTTTTTATCTAGATTAAAATCCCCAAAAAGAAAGAA---------TAAAGCT-TATT--AATT--------AT-----TAAACAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........CGTAACAACTTTGGCACGGACAGGATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	2
........CGTAACAACTTTGGCACGGACAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............CAACTTTGGCACGGACAGGATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
.................TTTGGCACGGACAGGATATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAA---------TAAAGCT-TATT--AATT--------..............	22	1	1.00	1	0	1	0	0	0	0
........CGTAACAACTTTGGCACGGACAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0

droWil2

TTGTTGCTCGCAACAACAACGGCACGGACAGGATATTCGTGACTGTAACGGTAGGTTCTT---AC-------------------AT--------ATTTTT-T-GGAG------------GC--------------------------------------------------------------------AAT---------------------CTTT------GTGT-------T--AATTGTTTGCGTGTTCATATTT-T------------------TT----------------TAACGCTTCTGCT-TA-TTAACTTGCCGCAATTCTT--------TATCT----TC--TTT--CT---------CT------------------TCCT------------CCTTAGATTAAAATACCGAAAAAGAAAGAAAGCTTAGCTTAAAGCT-TATT--AATTA-------AC-----TCTACAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................GACAGGATATTCGTGACTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	3	0	0	0	0
........................CGGACAGGATATTCGTGACTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0
..........................GACAGGATATTCGTGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0
........................CGGACAGGATATTCGTGACTGTAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0
....................GGCACGGACAGGATATTCGTGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0
..................ACGGCACGGACAGGATATTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
...........AACAACAACGGCACGGACAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
..............................GGATATTCGTGACTGTAACGGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
................CAACGGCACGGACAGGATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
........................CGGACAGGATATTCGTGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGAAAGAAAGCTTAGCTT.......................................	23	1	1.00	1	0	0	1	0	0
..........................GACAGGATATTCGTGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
...................CGGCACGGACAGGATATTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
............ACAACAACGGCACGGACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
............................CAGGATATTCGTGACTGTAACGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AATACCGAAAAAGAAAGAAAGC..............................................	22	1	1.00	1	0	0	1	0	0
........................CGGACAGGATATTCGTGACTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
...............ACAACGGCACGGACAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
...................CGGCACGGACAGGATATTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATACCGAAAAAGAAAGAA.................................................	22	1	1.00	1	0	1	0	0	0
..............AACAACGGCACGGACAGGATATTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0

droVir3

TTGTTGCCCGCAACGACTTTGGAACGGACAGAATATTCGTCACCATTACAGTACGTACTGCCTA--CGAAT-----------------------GCCCAT-T-------------------------------------------------------------------------------------------------------------------------GTGT----------TATGTGTTTGTTGTCGCTGTAC-CTGAATGTTTGGCTATTTATC----------------TAATGCTTTTGCT-AA-CTAACC-TTTGCTATTCTC--------TCTCTCTCT---------CTT--------TT-------------TACGCTTTT-----C---TTTTTCTAGATTAAAACGCCCAAAAAGAAAGAA---------TAAAGCC-TATTTCAAA--------TATA----TTTACTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................TTGGAACGGACAGAATATTCGTCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCCAAAAAGAAAGAA---------TAAAGCC-T...............................	26	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAA---------TAAAGCC-TATTTC..........................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAAAGAA---------TAAAGCC-................................	19	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAACGCCCAAAAAGAAAG...................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CGCAACGACTTTGGAACGGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCCAAAAAGAAAGAA---------TAAAGCC-T...............................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCAAAAAGAAAGAA---------TAAAGCC-T...............................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAACGCCCAAAAAGAA.....................................................	20	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAAGAA---------TAAAGCC-TA..............................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCAAAAAGAAAGAA---------T.......................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCCAAAAAGAAAGAA---------TAAAGCC-................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CGACTTTGGAACGGACAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GGAACGGACAGAATATTCGTCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACGCCCAAAAAGAAAGAA---------T.......................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAA---------TAAAGCC-TATTTCAAA--------TATA----TT.....	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCCCAAAAAGAAAGAA---------TAAAGCC-................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TTGGAACGGACAGAATATTCGTCACCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GCAACGACTTTGGAACGGACAGAATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................AATATTCGTCACCATTACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CAACGACTTTGGAACGGACAGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAA---------TAAAGCC-TATTTCAAA--------...............	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCCCAAAAAGAAAG...................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAACGCCCAAAAAGAAAGA..................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAAGAA---------TAAAGCC-................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GACTTTGGAACGGACAGAATATTCGTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCCAAAAAGAAAGAA---------TAAAGCC-................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GGACAGAATATTCGTCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAA---------TAAAGCC-TATTTCA.........................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGCCCAAAAAGAAAG...................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACGCCCAAAAAGAAAG...................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GAATATTCGTCACCATTACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAACGCCCAAAAAGAA.....................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAACGCCCAAAAAGA......................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAA---------TAAAGCC-TATTTCAAA--------TAT............	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................GAATATTCGTCACCATTACAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TTTGGAACGGACAGAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CTT--------TT-------------TACGCTTTT-----C---TTTTTCTAG.........................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GGAACGGACAGAATATTCGTCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GTTGCCCGCAACGACTTTGGAACGGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGAA---------TAAAGCC-TATTTCA.........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCCAAAAAGAAAGAA---------T.......................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCAAAAAGAAAGAA---------TAAAGCC-................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGCCCAAAAAGAAAGAA---------TA......................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GGAACGGACAGAATATTCGTCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAA---------TAAAGCC-TATTTC..........................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TTGGAACGGACAGAATATTCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAAGAA---------TAAAGCC-TATTTCAAA--------T..............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GCAACGACTTTGGAACGGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAAGAA---------TAAAGCC-TATTTCA.........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAAAGAAAGAA---------TAAAGCC-TAT.............................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GACTTTGGAACGGACAGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............ACGACTTTGGAACGGACAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CGGACAGAATATTCGTCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGCCCAAAAAGAAAGA..................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GACAGAATATTCGTCACCATTACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAACGCCCAAAAAGAAA....................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCC-TATTTCAAA--------TATA----.......	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GCCCGCAACGACTTTGGAACGGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ACGGACAGAATATTCGTCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGCCCGCAACGACTTTGGAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACGCCCAAAAAGAAAGAA---------TA......................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TTGGAACGGACAGAATATTCGTCACCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........CGCAACGACTTTGGAACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCCCAAAAAGAAAGAA---------TAAAGCC-T...............................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TAAAACGCCCAAAAAGAAAGAA---------TAAAGC..................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTGTTGCACGCAACGACTTTGGCACGGATAGAATATTCGTCACAATTACAGTACGTACTGCCTA--TGAATATCTGTTTGTGTTATGTGT----------------------------------------------------------------------------------------------------------------------------------------------------TTGTATCTGCTGTCGCTGTAC-CTGAATGTCTTGCTATTGATC----------------TAATGCTTTTGCT-AA-CTAACC-TTTGCTATTCTC--------TCTCTCTCT-C--TCTCTCT---------CTTTCTCTATTTCTTTATG--------------CTTTTCTAGATTAAAACGCCCAAAAAGAAAGAA---------TAAAGCT-TATTTCAATT--------ATATTTATATACAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAACGCCCAAAAAGAAAGAA---------........................................	24	1	1.00	1	0	0	0	0	0	1

droGri2

TAGTCGCACGCAATGACTTTGGAACGGACAGAATATTCGTCACCATTACAGTACGTACTGCCTA------T-------------ATGTGTTTAGCTCTTGATGT-TA------------------------------------------------------------------------------------------------------------------------TT------AAGTACTGTAGC-TGTTGCTGTCC-CTGAATATTAAGCTATTTCTC----------------TAACGCTTATGCT-AA-CTAACC-ATTGCTATTCTC--------TCTCTCTCT-C--TCTCTCT--CTCT--TGT-------------TACGCTTTT-----C---TCTTTTTAGATTAAAACGCCCAAAAAGAAAGAA---------TAAAGCT-TATTTCAATTATCTTAATATA----TATAAAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................ATTAAAACGCCCAAAAAGAAAGA..................................................	23	1	1.00	1	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGCCCAAAAAGAAAGAA---------TAAAGCT-................................	28	1	1.00	1	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGCCCAAAAAGAAAGAA---------TAAA....................................	25	1	1.00	1	1	0
.....................GAACGGACAGAATATTCGTCACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0

-22.0	-21.7	-21.7	-21.6

dsi_23384

2r:12517629-12517786 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads