ID:

dsi_23381

 Coordinate:

3r:4410078-4410227 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.1 -10.3 -10.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGCCAGGCTGGCTACGGGACGTATGCGTAATGCGAGGCTTTTACGAGTTGATGATGTCACCAGGCAGGGCATGAATTAACCACAGGCCGGGTTTATTGGGCCTGGGAAACATAACTTAGACGACCTTGTTGGGGGTTCAGTTTTCATCACGATTTCGGGTTAGCCATTATTCATTATGATTTCCGACTTCCTACTTACAGATTTTTCACAACAAACCAATCAAAATGAGTTCCGCTGAGTACTACCCATT
*************************************************************************************************************************.........(((((((......((((...(((...((.....))...)))....)))).....))))).))********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 M023
head
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.....................................................................................TCCGGATTTATTGGGCGT................................................................................................................................................... 18 3 20 1.10 22 17 0 3 0 0 0 2 0 0
....................................................................................GGCGGGGTTGATTGGGCCTG.................................................................................................................................................. 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................TGAGTTCCGCTGAGTACTACCCATT 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................GAGTTCCGCTGAGTACTACCCATT 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AGTTCCGCTGAGTACTAC..... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................GACCTTGTTGGGGGTTCAG.............................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TAAAATGAGTTCCGCTGAGTACTACCC... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................ATTATGATTTCCGACTTCCT.......................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTTCCGCTGAGTACTACCC... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................GTCCGGATTTATTGGGCGT................................................................................................................................................... 19 3 11 0.45 5 3 1 0 0 0 0 0 1 0
...................................................................................TGTCCGGGTTTATTGGGC..................................................................................................................................................... 18 2 5 0.40 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTCGGGATAGCCATCA................................................................................. 16 2 20 0.15 3 0 0 0 0 0 0 0 3 0
...................................................................................................................GTAGACGGCCTTGTTAGGG.................................................................................................................... 19 3 15 0.13 2 2 0 0 0 0 0 0 0 0
......................................................................................CCGGATTTATTGGGCGT................................................................................................................................................... 17 2 8 0.13 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................TTCGGGATAGCCATT.................................................................................. 15 1 10 0.10 1 0 0 0 0 0 0 1 0 0
AGCCAGGCTGGCTACGGCAA...................................................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 0 0 1
...................................................................................................................GTAGACGGCCTTGGTGGGG.................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GCGGTCCGACCGATGCCCTGCATACGCATTACGCTCCGAAAATGCTCAACTACTACAGTGGTCCGTCCCGTACTTAATTGGTGTCCGGCCCAAATAACCCGGACCCTTTGTATTGAATCTGCTGGAACAACCCCCAAGTCAAAAGTAGTGCTAAAGCCCAATCGGTAATAAGTAATACTAAAGGCTGAAGGATGAATGTCTAAAAAGTGTTGTTTGGTTAGTTTTACTCAAGGCGACTCATGATGGGTAA
**********************************************************.........(((((((......((((...(((...((.....))...)))....)))).....))))).))************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
...........................................................................................................................................................................................................AAAGTGTTGTTTGGTTAGTTTT......................... 22 0 1 1.00 1 0 1 0 0 0 0
......................................................................................................................................CAAGTCAAAAGTAGTGCTAA................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................AAAAGTGTTGTTTGGTTAGTT........................... 21 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................ACAACACCCAAGTCTGAAGT........................................................................................................ 20 3 5 0.20 1 1 0 0 0 0 0
....................................................................................CAGGCCTAAATAACCCGCA................................................................................................................................................... 19 3 11 0.18 2 0 0 2 0 0 0
..........................................................................................................................................................................................................AAAAATGTTGTTTGGTT............................... 17 1 12 0.17 2 1 1 0 0 0 0
............................................................................................................................................................................................................AAGTGTTGTTTGGATTGTT........................... 19 2 8 0.13 1 0 0 0 1 0 0
...................................................................................................................................................................................AAAGGCTAAAGGATGTATAT................................................... 20 3 20 0.10 2 0 0 0 0 0 2
.....................................AAAAATGCCCAACTACT.................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 1 0
................................................................................................................................................................................ACTAAAGGCTCAAGG........................................................... 15 1 17 0.06 1 0 0 0 1 0 0
.......................................................................................................................................................................................................................................GGCGTCTCATGATTGGTGA 19 3 17 0.06 1 0 0 1 0 0 0
......................................................................................GGCCCAAATGACCCGAA................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................AGGTGATCAGTAATACTAA..................................................................... 19 3 20 0.05 1 0 0 0 0 1 0
.................................................................................................................................................................................CGAAACGCTGCAGGATGA....................................................... 18 3 20 0.05 1 1 0 0 0 0 0

Generated: 04/24/2015 at 06:18 AM