ID:

dsi_23373

 Coordinate:

2l:4714541-4714690 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.0 -29.9 -29.9

Flybase annnotation

five_prime_UTR [2l_4714478_4714500_+]; CDS [2l_4714501_4714540_+]; exon [2l_4714478_4714540_+]; intron [2l_4714541_4721689_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGGAGGCGTCATGTCCAACACGGAGAAAGGAGGTCTGCACAGAGTGCGAAGTAAGTGCATAGATAAAGTGATATGATATCATAAGTGATAGTGATAAGTGCCCACCCAATATCCTGGTTATATCATCTAGTGGCAACCAGCACACTGATTAACTGCCTATTAGTAGTTAATACCTAGTGATTTGAGAACTTTCTGGTTGAAATTTAATATTTATACGCAATAGCTAGAGTTCATCTATGTTTACGGTATT
**************************************************.................((((((((((((((....)))))(((.........)))(((......)))))))))))).......(((((((..((((((((((((((......)))))))))...))))).............))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
............GTCCAACACGGAGAAAGGA........................................................................................................................................................................................................................... 19 0 1 3.00 3 1 0 2 0 0 0
............GTCCAACACGGAGAAAGGAGGTCTG..................................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0
....................................................................................................................GTTATATCATCTAGTGGCAACCA............................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
................AACACGGAGAAAGGAGGACTGCACAGAG.............................................................................................................................................................................................................. 28 1 1 1.00 1 0 0 0 1 0 0
................AACACGGAGAAAGGAGGTCTGCAC.................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0
...................................................................................................................................GGCAACCAGCACACTGATTAACT................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0
............GTCCAACACGGAGAAAGGAGGT........................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
..........ATGTCCAACACGGAGAAAGGA........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
..........................AAGGAGGTCTGCACAGAGTGCGAAACT..................................................................................................................................................................................................... 27 3 1 1.00 1 0 0 0 0 1 0
..........................................................................................................................................AGCGCACTGATTAACT................................................................................................ 16 1 3 0.33 1 0 0 1 0 0 0
.........................TAAGGAGGTCTGCACAAAGC............................................................................................................................................................................................................. 20 3 4 0.25 1 0 1 0 0 0 0
..................................................................................................................................................................TTAGTTAATACCTAGAGATA.................................................................... 20 3 7 0.14 1 0 0 0 1 0 0
...................................................TAATTGAATAGCTAAAGTGAT.................................................................................................................................................................................. 21 3 8 0.13 1 0 0 0 0 0 1
...........................................................................................................................................................................ACCTAGCGATTTGAGA............................................................... 16 1 8 0.13 1 0 0 0 0 1 0
.............................................................................................................................................................................................ATTCTGGTTGAAATTTAG........................................... 18 2 17 0.06 1 0 0 0 0 1 0
...........TGACCAACACGGGGAAA.............................................................................................................................................................................................................................. 17 2 18 0.06 1 0 0 0 1 0 0
...........................................................TAGATAACGTGATAGGAC............................................................................................................................................................................. 18 3 19 0.05 1 0 1 0 0 0 0
...................................................................................................................................................................................ATTGGAGATCTTCCTGGTT.................................................... 19 3 20 0.05 1 0 0 0 0 1 0
.........CATGTCCAGCACTGAGA................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 1 0 0
.........................................................................................................................ATCATCTAGTCGGCACCA............................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TCCTCCGCAGTACAGGTTGTGCCTCTTTCCTCCAGACGTGTCTCACGCTTCATTCACGTATCTATTTCACTATACTATAGTATTCACTATCACTATTCACGGGTGGGTTATAGGACCAATATAGTAGATCACCGTTGGTCGTGTGACTAATTGACGGATAATCATCAATTATGGATCACTAAACTCTTGAAAGACCAACTTTAAATTATAAATATGCGTTATCGATCTCAAGTAGATACAAATGCCATAA
**************************************************.................((((((((((((((....)))))(((.........)))(((......)))))))))))).......(((((((..((((((((((((((......)))))))))...))))).............))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
...TCCGCAGTACAGGTTGTGCCTC................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0
...TCCGCAGTACAGGTTGTGCCT.................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
........................................................................................................................................GGTCGTGTGACTAATTGACGG............................................................................................. 21 0 1 1.00 1 0 1 0 0
................................................................................................................GGACCAAGATAGCAGATAACCGT................................................................................................................... 23 3 1 1.00 1 0 0 1 0
.................................AGACGCGTCTCACGCCT........................................................................................................................................................................................................ 17 2 17 0.06 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:4714491-4714740 + dsi_23373 AGGAG-GCGTC---ATGTCCAACACGGAGAAAGGAGGTCTGCACAGAGTGCGAAGTAAGTGCATA-------GATAAAG--TGATATGATATCA-TA-----AGTGATA-GTGATA--------------------AGTGCCCACCCAATATCCTG---GTTATATCATCTAGTGGCA-ACCAGCACACTGATTA--------ACTGCCTA--TT----AG--------------TAGTTAATACCTAGTGATTTG----------------------------------------------------------------AGAACTTTCT-----------------------------------------------------------------G-------------------GTTGAAA-----------T-------------------------------------TTAATATTTATACGCAATAGCTAGAG---------TTCATCTATGTTTACGGT-----ATT
droSec2 scaffold_5:2988740-2988981 + AGAA--GCGTC---ATGTCCAACACGGAGAAAGGAGGTCTGCACAGAGTGCGAAGTAAGTACATA-------GATTGAG--TGATATGATATCA-TA-----AGTGATA-GTGATA--------------------AGTGCCCACCCAATATCCTG---GTTATATCACATAGTGGCA-ACCAGCACACTGATTA--------ACTGCATA--TT----AG--------------TAG-------TAAATGAATTA----------------------------------------------------------------AGAACTTTCT-----------------------------------------------------------------G-------------------GTTGAAA-----------T-------------------------------------TAAATATTTATACGAAATAGCTTGAG---------TTCATCTATGGTTACGGT-----ATT
dm3 chr2L:4893948-4894174 + A----GGCGTC---ATGTCCAACACGGAGAAAGGAGGTCTGCAAAGAGTGCGAAGTAAGTAGATA-----------ACG--TGATATGATATCA-TA-----TGTGATA--TGATA--------------------GGTGCCCACCCAACATCCTG---CTTATATCATA---------GCCAGCACACTGATTA--------TTTGAATA--TT----AG--------------TAA-------ATAATGATTTG----------------------------------------------------------------AGAACTTTCG-----------------------------------------------------------------A-------------------GTTGAAA-----------T-------------------------------------TTAATATTTATACGAAATAGCTAGAG---------ATCATCTATGGTTACTGT-----ATT
droEre2 scaffold_4929:4976731-4976966 + A----GGCGTC---ATGTCCAACACGGAGAAAGGAGGTCTGCACAGAGTGCGAAGTAAGTAGATA-----------AAA--TGATATGATATGA-TA-----TATGATACGTGATA--------------------AGTCCCCACCCAATAACCTG---GTTATATCATACAGC------CCACCACACTGATTA--------ACTGCATG--TT----CT--------------AAGTTAATACCTAGTGCTTTA----------------------------------------------------------------AGAACTTTCG-----------------------------------------------------------------G-------------------GTGGAAA-----------T-------------------------------------TGAATATTTATGCGAAATAGCTAGAGATT------------TGTGGTTGCCGC-----ATT
droYak3 2L:4905714-4905957 + AGGCG-TCGTC---ATGTCCAACACGGAGAAAGGAGGTCTGCACAGAGTGCGAAGTAAGTAGATA-----------AAG--TGATATGATATCACTA-------TCATACGTGATA--------------------AGACGCCACTCAATATCCTG---GTTATTTCATATAGCACCAAACCACCAAACTTATTA--------ACTGCATT--TT--------------------GA---GATGCATTGTGATTGA----------------------------------------------------------------GGAACTTTCG-----------------------------------------------------------------A-------------------GTTGAAA-----------T-------------------------------------TTAATATTTATGCGAAATAGTTAGAGATT------------TGTGGTTACTGTTTCCAGTT
droEug1 scf7180000409005:776239-776518 + AGGAG-TCGTC---ATGTCCAACACCGAGAAAGGAGGTCTGCACAGAGTGCGAAGTAAGTAGATA-----------AAA--AGATATGAAAATA-TAATA-------T-CGTTATAAGGTCGCCAGTTGGTTTTTGAGGTCACACCCAAAGGATACT-A---------------TA--------CATGTATCTGTAATTT---CCTGCA------------------------------------------------------------------------------------------ATATTTAAAAGAAATGTTTCCA---CTTTC-----------------------------TCGTAACTT------GAATGTTCCTCTTAATTTT-----------TTTATTT------TCATAA-----------T-------------------------------------TAAATATTATTGTGAAATTGATTTAGATATA-GATTTTCTCTATAACCATCAT-----ACT
droBia1 scf7180000302188:1476855-1477181 + A----GGCGCC---ATGTCCAACACGGAGAAAGGAGGAATGCACAGTGTGCGAAGTAAGTAGATA-----------GTC--TGATATGATATGA-TATCACGCGCGA-------AA-CGTCCCCAGTCGGTTCTTAAGTTCCCACCCAAAGGAAGCGT-TTTATATCT-------A--------CAAGTCGCTGTGGCCTTTAACTACTTC--CTAATTAGTTTTATTGATTAAAAA------------------------------------------------------------------------AATACATACTAGCAT---TT-----------------------------TTGTTTTAGA------AATTCT--------------TAGAATTTTTCCACCTAAGCGATGCAAA-AACTA--AAGCTCAATACAGTCTAGAGTTTTTGTGCAATATTAATATTTTTACATTTTTGTGAGACAGTTGGGAGCT-------------------------------T
droTak1 scf7180000415705:204423-204746 + GA---GGCGTC---ATGTCCAACACGGAGAAAGGAGGACTGCACAGAGTGCGAAGTAAGTACATT-----------CAA--TGATATGATATGA-TATCACGCGCGA-------AA-AGTCCCCAGACGGTTTTTAAGTTTCCACTAAAAGTAACTGA-ATAA--------------------------------------------------------------------------------------------------------------------------TATATCACCCTGAATTATTTAAG-AATATAATATTATAT---TT-----------------------------TTGTTTTTTA------AATTACCTTCTTTTACTTCCGAGAA---------ATGATCAGTGAAAA-TACAA--AAATTTGTTATAGTTCTCAGTTCTATTAAAATATTTACCTTTTTATATTTATGAGATAGAGTTACAAGTTTA-AGGTTTCTCTATATCCACTAT-----ATT
droEle1 scf7180000491046:2556972-2557245 + A----GACGTC---ATGTCCAACACGGAGAAAGGAGGACTGCACAGAGTGCGAAGTAAGTAGATA-----------AAA--TTATATGTTATCA-C-----CTGG--TT-TTTAAA--------------------AGGTCCAACCCTAAATTTCTA-A---------------CA--------CAAACTGATGAAATTT---CTAGC------T----AG--------------CAA-------ATACATATTTG----------------------------------------------------------------TAAAATAACAAATTGAAATATTTAGTTTTATCACTATTTTATCACCA------G---------------TTT-----------TTCAATT------TTACAACGAATAGTTAGT-------------------------------------TCAATAAT------AAGTAGACTTAGAATAA-GGGTTTCTGTATAACCACTGT-----ATT
droRho1 scf7180000780009:15209-15283 - GC---GGCGTC---ATGTCCAACACGGAGAAAGGAGGACTGCACAGAGTGCGAAGTAAGTAGATA-----------AAA--TAATATGATATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453842:1354965-1355178 - AGGAG-GCACC---ATGTCCAACACGGAGAGAGGATGTCTGTACAGAGTGCGAAGTAAGTAGTTATGATATATACAATA--TGATACGATATGA-TATCAGCCATAA-------AA--------------------AGT-GTCACCCAAAGTACAG---TCTG-----------------------TACTTATTT--------ACAGTCTT------------------------------------------------------------------------------------------ATTTAGAATGA---------------------------------------------------------------------------------------------------------------------TTTGT-------------------------------------TTAGTATTATTATGAAATAGTTAAATGGTTAGGGTTTTTCCTATGGCTAGTGT-----ATT
droKik1 scf7180000302271:6042-6128 + A----GACGTC---ATGTCCAACACGGAGAAAGGAGGACTGCACAGAGTGCGAAGTAAGTAGATA-------AA---CGTGT-AAATGATATCA-C-----CTGTGAAA-AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12943:2634278-2634536 + GGGAG-GCGTC---ATGTCCAACACGGAGAAAGGAGGCCTGCACAGAGTGCGAAGTAAGTAGATA-----------AAAA-GTTTATGATTTCA-T------CACAA-------AA-ATTCCC-------------------CTCAGAGTTACGTA---CTAATA--------------------------------------ACTGCA--GTAA--------------------A-----AAACATTGAAATGACATCGAGTTTTCGGGAAAATATTAAACTTGCACATCACGTTGAATAATTTTTG-AAAGTGATCCCATAATTTTTC--------------------------------TGTCTAAATCCGAATGTTACTCT------CCC-A-------------------GATGAAA-----------T-------------------------------------ACAATA-------------------------------------------TGGT-----AGC
droBip1 scf7180000396535:2033075-2033303 + GGGAG-GCGTC---ATGTCCAACACGGAGAAAGGAGGCCTGCACAGAGTGCGAAGTAAGTAGATA-----------CAAA-TTGTATGATTTCA-T------CACAA-------AA-ATTCCCAAA----------TATGCCCTCACAGTTACGTA---CTTAAA--------------------------------------GTTGCA--GTAA--------------------AA---AAAACATTTTAATGACAGCGTTTTTTAGGAAAATTATAAGACTTGCACATCACGTTTAATAATTTTCG-AAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG---------CCCATAATTA-TTCAAAT-----GTT
dp5 4_group3:5545191-5545255 - GC---GGCGTC---ATGTCCAACACGGAGAAAGGAGGCCTTCACAGAGTCAGAGGTAAGTGGAAG-----------GAA--AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_1:7038730-7038794 - GC---GGCGTC---ATGTCCAACACGGAGAAAGGAGGCCTTCACAGAGTCAGAGGTAAGTGGAAG-----------GAA--AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004585:1652754-1652817 - AAGAG-ACGTCAAGATGTCGAATACAGAGGGAGGAGGTATACAGAGAATAAGAAGTAAGTACCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13246:2330894-2330944 + G------CGAC---ATGTCGAACACGGAGCGACGCGGCCTGCAAAGAGTACGAAGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:5808299-5808367 + G-----GCGAT---ATGTCGAACACAGAGAAGCGGGGCCTACAAAGAGTACGAAGTAAGTAAATT-------AACAAAA--CAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGGAG-GCGTC---ATGTCCAACACGGAGAAAGGAGGTCTGCACAGAGTGCGAAGTAAGTGCATA-------GATAAAG--TGATATGATATCA-TA-----AGTGATA-GTGATA--------------------AGTGCCCACCCAATATCCTG---GTTATATCATCTAGTGGCA-ACCAGCACACTGATTA--------ACTGCCTA--TT----AG--------------TAGTTAATACCTAGTGATTTG----------------------------------------------------------------AGAACTTTCT-----------------------------------------------------------------G-------------------GTTGAAA-----------T-------------------------------------TTAATATTTATACGCAATAGCTAGAG---------TTCATCTATGTTTACGGT-----ATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................GTCCAACACGGAGAAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00300010002000000000
................GTCCAACACGGAGAAAGGAGGTCTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200020000000000000
...............................................................................................................................................................GTTATATCATCTAGTGGCA-ACCA.............................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
....................AACACGGAGAAAGGAGGTCTGCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
..............................................................................................................................................................................GGCA-ACCAGCACACTGATTA--------ACT......................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
................GTCCAACACGGAGAAAGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
..............ATGTCCAACACGGAGAAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..............................AAGGAGGTCTGCACAGAGTGCGAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
droSec2
AGAA--GCGTC---ATGTCCAACACGGAGAAAGGAGGTCTGCACAGAGTGCGAAGTAAGTACATA-------GATTGAG--TGATATGATATCA-TA-----AGTGATA-GTGATA--------------------AGTGCCCACCCAATATCCTG---GTTATATCACATAGTGGCA-ACCAGCACACTGATTA--------ACTGCATA--TT----AG--------------TAG-------TAAATGAATTA----------------------------------------------------------------AGAACTTTCT-----------------------------------------------------------------G-------------------GTTGAAA-----------T-------------------------------------TAAATATTTATACGAAATAGCTTGAG---------TTCATCTATGGTTACGGT-----ATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................GTCCAACACGGAGAAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040040
................GTCCAACACGGAGAAAGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030030
..............ATGTCCAACACGGAGAAAGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020020
..........................GAGAAAGGAGGTCTGCACAGAGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020200
............................GAAAGGAGGTCTGCACAGAGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020020
....................AACACGGAGAAAGGAGGTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020020
...............................AGGAGGTCTGCACAGAGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020020
................................GGAGGTCTGCACAGAGTGCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
.GAA--GCGTC---ATGTCCAACACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
..............ATGTCCAACACGGAGAAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
............................GAAAGGAGGTCTGCACAGAGTGCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
................GTCCAACACGGAGAAAGGAGGTCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
................................GGAGGTCTGCACAGAGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
................GTCCAACACGGAGAAAGGAGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
..............ATGTCCAACACGGAGAAAGGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
....................AACACGGAGAAAGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...........................AGAAAGGAGGTCTGCACAGAGTGCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
dm3
A----GGCGTC---ATGTCCAACACGGAGAAAGGAGGTCTGCAAAGAGTGCGAAGTAAGTAGATA-----------ACG--TGATATGATATCA-TA-----TGTGATA--TGATA--------------------GGTGCCCACCCAACATCCTG---CTTATATCATA---------GCCAGCACACTGATTA--------TTTGAATA--TT----AG--------------TAA-------ATAATGATTTG----------------------------------------------------------------AGAACTTTCG-----------------------------------------------------------------A-------------------GTTGAAA-----------T-------------------------------------TTAATATTTATACGAAATAGCTAGAG---------ATCATCTATGGTTACTGT-----ATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................TCTGCAAAGAGTGCGAAGTAAGTAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000
.......................................TGCAAAGAGTGCGAAGTAAGTAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
..................CCAACACGGAGAAAGGAGGTCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...............TGTCCAACACGGAGAAAGGAGGTCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000
...............................AGGAGGTCTGCAAAGAGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AACACGGAGAAAGGAGGTCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................GTCCAACACGGAGAAAGGAGGTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAAATAGCTAGAG---------ATCATCTATGGT..............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GTCCAACACGGAGAAAGGAGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................ACGGAGAAAGGAGGTCTGCAAAGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GTCCAACACGGAGAAAGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TAA-------ATAATGATTTG----------------------------------------------------------------AGAACTTTCG-----------------------------------------------------------------A-------------------GT...................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................TATATCATA---------GCCAGCACACTGAT...................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................GTAAGTAGATA-----------ACG--TGATATGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...............................AGGAGGTCTGCAAAGAGTGCGAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................GTCCAACACGGAGAAAGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AAGAGTGCGAAGTAAGTAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AGGAGGTCTGCAAAGAGTGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGAG---------ATCATCTATGGTTACT..........2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AAAGGAGGTCTGCAAAGAGTGCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........TC---ATGTCCAACACGGAGAAAGGAGGTCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................CGGAGAAAGGAGGTCTGCAAAGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CAACACGGAGAAAGGAGGTCTGCAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATGTCCAACACGGAGAAAGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TC---ATGTCCAACACGGAGAAAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................CCAACACGGAGAAAGGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
................................GGAGGTCTGCAAAGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAGAAAGGAGGTCTGCAAAGAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................GAAAGGAGGTCTGCAAAGAGTGCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................GGTCTGCAAAGAGTGCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GAAAGGAGGTCTGCAAAGAGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................CAACACGGAGAAAGGAGGTCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................AGTAGATA-----------ACG--TGATATGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GAGAAAGGAGGTCTGCAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GCAAAGAGTGCGAAGTAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TC---ATGTCCAACACGGAGAAAGGAGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............TGTCCAACACGGAGAAAGGAGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................GGTCTGCAAAGAGTGCGAAGTAAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................CGGAGAAAGGAGGTCTGCAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GGAGGTCTGCAAAGAGTGCGAAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droEre2
A----GGCGTC---ATGTCCAACACGGAGAAAGGAGGTCTGCACAGAGTGCGAAGTAAGTAGATA-----------AAA--TGATATGATATGA-TA-----TATGATACGTGATA--------------------AGTCCCCACCCAATAACCTG---GTTATATCATACAGC------CCACCACACTGATTA--------ACTGCATG--TT----CT--------------AAGTTAATACCTAGTGCTTTA----------------------------------------------------------------AGAACTTTCG-----------------------------------------------------------------G-------------------GTGGAAA-----------T-------------------------------------TGAATATTTATGCGAAATAGCTAGAGATT------------TGTGGTTGCCGC-----ATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................GTCCAACACGGAGAAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000110
....................................................................................................................................................ATAACCTG---GTTATATCATACAGC------CCAC............................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..............ATGTCCAACACGGAGAAAGGAGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
............................GAAAGGAGGTCTGCACAGAGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
..............ATGTCCAACACGGAGAAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
..................CCAACACGGAGAAAGGAGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTAGAGATT------------TGTGGTTGCCGC-----A..2611.0010001000
................................GGAGGTCTGCACAGAGTGCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
droYak3
AGGCG-TCGTC---ATGTCCAACACGGAGAAAGGAGGTCTGCACAGAGTGCGAAGTAAGTAGATA-----------AAG--TGATATGATATCACTA-------TCATACGTGATA--------------------AGACGCCACTCAATATCCTG---GTTATTTCATATAGCACCAAACCACCAAACTTATTA--------ACTGCATT--TT--------------------GA---GATGCATTGTGATTGA----------------------------------------------------------------GGAACTTTCG-----------------------------------------------------------------A-------------------GTTGAAA-----------T-------------------------------------TTAATATTTATGCGAAATAGTTAGAGATT------------TGTGGTTACTGTTTCCAGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................GTCCAACACGGAGAAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00303000000000
........GTC---ATGTCCAACACGGAGAAAGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..................CCAACACGGAGAAAGGAGGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000
.........................GGAGAAAGGAGGTCTGCACAGAGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
..............................................................................................................................................................................................TATTA--------ACTGCATT--TT--------------------GA---GATG................................................................................................................................................................................................................................................................................................2111.00101000000000
......................CACGGAGAAAGGAGGTCTGCACAGAGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
...........................AGAAAGGAGGTCTGCACAGAGTGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..........................GAGAAAGGAGGTCTGCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
............................GAAAGGAGGTCTGCACAGAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.................................................................................................................ATA--------------------AGACGCCACTCAATATCCTG---GTT..................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
...................CAACACGGAGAAAGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
............................GAAAGGAGGTCTGCACAGAGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
................GTCCAACACGGAGAAAGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAGATT------------TGTGGTTACT..........1911.00100000100000
..............................................................................................................................................................................................................GCATT--TT--------------------GA---GATGCATTGTGATTGA----------------------------------------------------------------G...................................................................................................................................................................................................................2611.00100000010000
..........................GAGAAAGGAGGTCTGCACAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...........................AGAAAGGAGGTCTGCACAGAGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
droEug1
AGGAG-TCGTC---ATGTCCAACACCGAGAAAGGAGGTCTGCACAGAGTGCGAAGTAAGTAGATA-----------AAA--AGATATGAAAATA-TAATA-------T-CGTTATAAGGTCGCCAGTTGGTTTTTGAGGTCACACCCAAAGGATACT-A---------------TA--------CATGTATCTGTAATTT---CCTGCA------------------------------------------------------------------------------------------ATATTTAAAAGAAATGTTTCCA---CTTTC-----------------------------TCGTAACTT------GAATGTTCCTCTTAATTTT-----------TTTATTT------TCATAA-----------T-------------------------------------TAAATATTATTGTGAAATTGATTTAGATATA-GATTTTCTCTATAACCATCAT-----ACTSizeHit CountTotal NormTotal
No Reads
droBia1
A----GGCGCC---ATGTCCAACACGGAGAAAGGAGGAATGCACAGTGTGCGAAGTAAGTAGATA-----------GTC--TGATATGATATGA-TATCACGCGCGA-------AA-CGTCCCCAGTCGGTTCTTAAGTTCCCACCCAAAGGAAGCGT-TTTATATCT-------A--------CAAGTCGCTGTGGCCTTTAACTACTTC--CTAATTAGTTTTATTGATTAAAAA------------------------------------------------------------------------AATACATACTAGCAT---TT-----------------------------TTGTTTTAGA------AATTCT--------------TAGAATTTTTCCACCTAAGCGATGCAAA-AACTA--AAGCTCAATACAGTCTAGAGTTTTTGTGCAATATTAATATTTTTACATTTTTGTGAGACAGTTGGGAGCT-------------------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
GA---GGCGTC---ATGTCCAACACGGAGAAAGGAGGACTGCACAGAGTGCGAAGTAAGTACATT-----------CAA--TGATATGATATGA-TATCACGCGCGA-------AA-AGTCCCCAGACGGTTTTTAAGTTTCCACTAAAAGTAACTGA-ATAA--------------------------------------------------------------------------------------------------------------------------TATATCACCCTGAATTATTTAAG-AATATAATATTATAT---TT-----------------------------TTGTTTTTTA------AATTACCTTCTTTTACTTCCGAGAA---------ATGATCAGTGAAAA-TACAA--AAATTTGTTATAGTTCTCAGTTCTATTAAAATATTTACCTTTTTATATTTATGAGATAGAGTTACAAGTTTA-AGGTTTCTCTATATCCACTAT-----ATTSizeHit CountTotal NormTotal
No Reads
droEle1
A----GACGTC---ATGTCCAACACGGAGAAAGGAGGACTGCACAGAGTGCGAAGTAAGTAGATA-----------AAA--TTATATGTTATCA-C-----CTGG--TT-TTTAAA--------------------AGGTCCAACCCTAAATTTCTA-A---------------CA--------CAAACTGATGAAATTT---CTAGC------T----AG--------------CAA-------ATACATATTTG----------------------------------------------------------------TAAAATAACAAATTGAAATATTTAGTTTTATCACTATTTTATCACCA------G---------------TTT-----------TTCAATT------TTACAACGAATAGTTAGT-------------------------------------TCAATAAT------AAGTAGACTTAGAATAA-GGGTTTCTGTATAACCACTGT-----ATTSizeHit CountTotal NormTotal
No Reads
droRho1
GC---GGCGTC---ATGTCCAACACGGAGAAAGGAGGACTGCACAGAGTGCGAAGTAAGTAGATA-----------AAA--TAATATGATATCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AGGAG-GCACC---ATGTCCAACACGGAGAGAGGATGTCTGTACAGAGTGCGAAGTAAGTAGTTATGATATATACAATA--TGATACGATATGA-TATCAGCCATAA-------AA--------------------AGT-GTCACCCAAAGTACAG---TCTG-----------------------TACTTATTT--------ACAGTCTT------------------------------------------------------------------------------------------ATTTAGAATGA---------------------------------------------------------------------------------------------------------------------TTTGT-------------------------------------TTAGTATTATTATGAAATAGTTAAATGGTTAGGGTTTTTCCTATGGCTAGTGT-----ATTSizeHit CountTotal NormTotal
No Reads
droKik1
A----GACGTC---ATGTCCAACACGGAGAAAGGAGGACTGCACAGAGTGCGAAGTAAGTAGATA-------AA---CGTGT-AAATGATATCA-C-----CTGTGAAA-AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GGGAG-GCGTC---ATGTCCAACACGGAGAAAGGAGGCCTGCACAGAGTGCGAAGTAAGTAGATA-----------AAAA-GTTTATGATTTCA-T------CACAA-------AA-ATTCCC-------------------CTCAGAGTTACGTA---CTAATA--------------------------------------ACTGCA--GTAA--------------------A-----AAACATTGAAATGACATCGAGTTTTCGGGAAAATATTAAACTTGCACATCACGTTGAATAATTTTTG-AAAGTGATCCCATAATTTTTC--------------------------------TGTCTAAATCCGAATGTTACTCT------CCC-A-------------------GATGAAA-----------T-------------------------------------ACAATA-------------------------------------------TGGT-----AGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................AGGAGGCCTGCACAGAGTGCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000002
...............TGTCCAACACGGAGAAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002100100
........GTC---ATGTCCAACACGGAGAAAGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
............................GAAAGGAGGCCTGCACAGAGTGCGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
....................AACACGGAGAAAGGAGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
..........C---ATGTCCAACACGGAGAAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
................GTCCAACACGGAGAAAGGAGGCCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
....................AACACGGAGAAAGGAGGCCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
........GTC---ATGTCCAACACGGAGAAAGGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
...AG-GCGTC---ATGTCCAACACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.......CGTC---ATGTCCAACACGGAGAAAGGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100
................GTCCAACACGGAGAAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droBip1
GGGAG-GCGTC---ATGTCCAACACGGAGAAAGGAGGCCTGCACAGAGTGCGAAGTAAGTAGATA-----------CAAA-TTGTATGATTTCA-T------CACAA-------AA-ATTCCCAAA----------TATGCCCTCACAGTTACGTA---CTTAAA--------------------------------------GTTGCA--GTAA--------------------AA---AAAACATTTTAATGACAGCGTTTTTTAGGAAAATTATAAGACTTGCACATCACGTTTAATAATTTTCG-AAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAG---------CCCATAATTA-TTCAAAT-----GTTSizeHit CountTotal NormTotal
No Reads
dp5
GC---GGCGTC---ATGTCCAACACGGAGAAAGGAGGCCTTCACAGAGTCAGAGGTAAGTGGAAG-----------GAA--AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....GGCGTC---ATGTCCAACACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200000000
..................CCAACACGGAGAAAGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200000000
..............................AAGGAGGCCTTCACAGAGTCAGAGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..........C---ATGTCCAACACGGAGAAAGGAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.........................GGAGAAAGGAGGCCTTCACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............TGTCCAACACGGAGAAAGGAGGCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
........GTC---ATGTCCAACACGGAGAAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
droPer2
GC---GGCGTC---ATGTCCAACACGGAGAAAGGAGGCCTTCACAGAGTCAGAGGTAAGTGGAAG-----------GAA--AAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AAGAG-ACGTCAAGATGTCGAATACAGAGGGAGGAGGTATACAGAGAATAAGAAGTAAGTACCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........GTCAAGATGTCGAATACAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00211000
.........................AGAGGGAGGAGGTATACAGAGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
....................AATACAGAGGGAGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100
...................GAATACAGAGGGAGGAGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...................GAATACAGAGGGAGGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001
droVir3
G------CGAC---ATGTCGAACACGGAGCGACGCGGCCTGCAAAGAGTACGAAGTAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
G------CGAC---ATGTCGAACACGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
..................CGAACACGGAGCGACGCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
.........AC---ATGTCGAACACGGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
........................CGGAGCGACGCGGCCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
droGri2
G-----GCGAT---ATGTCGAACACAGAGAAGCGGGGCCTACAAAGAGTACGAAGTAAGTAAATT-------AACAAAA--CAACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................GAAGCGGGGCCTACAAAGAGTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110

Generated: 05/18/2015 at 10:42 PM