ID:

dsi_23368

 Coordinate:

x:10454916-10455065 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-48.2 -48.1 -48.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGGTGGACAACTGCGGTGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGGAGTGGGTAAAAAGCGCGGTCGTGGTGAACGTGAAGGTGGAGGAGCGTCACCAGACGTAGCAACAGCTGGCGTAGGAGCACAGCACAGCGGGGCACAGCCTCCTGCCGCCAGACAAGTCATAGCCATAGGCCTCGAGGGGCGGAGTCGGCGCGGGCAGCCGACGACCCATCGCCGCCATCGATTACATACGTACTGCCAT
**************************************************..((.((......((...(((.((((((.(((............))))))))))))...))....((((((......)).)))).(((.(((((...))))))))(((((.......((...(((...)))...))..)))))..)).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M053
female body
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
...................................................................................................................................................................................................................................ATCGATTACATACGTACTGCC.. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
............................................................................GAACGTGAAGGTGGAGGAGCGTCACCAG.................................................................................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................GGAGGAGCGTCACCAGAC................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................TGGTGGACGTGAAGGTGGAGCAG........................................................................................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0
....................................AGCGCACGTGTTAGGA...................................................................................................................................................................................................... 16 2 14 0.79 11 0 0 0 0 2 0 2 5 2
...................................................AGTGGGTAAGAAGCCCGG..................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0
.................................................................GCGGTCGTGGTGAAATTG....................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 1 0 0
.................................................................GCGGTCGTGGTGAAAT......................................................................................................................................................................... 16 2 20 0.15 3 0 0 0 0 1 0 1 0 1
..........................................................................................................................................................................................................GGGGAGCCGACGACCGA............................... 17 2 8 0.13 1 0 0 0 0 1 0 0 0 0
..............................................................AGCGCGAACGTGGTGAACC......................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 1 0 0 0 0
...................................................................................................................GCTGGGGTAGGAGCA........................................................................................................................ 15 1 12 0.08 1 0 0 0 0 0 1 0 0 0
..............................................................AGCGCGAACGTGGTGAA........................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 0 1 0 0 0 0
......................................................................................................AGACGTAGCAATCGCGGGC................................................................................................................................. 19 3 16 0.06 1 0 0 0 0 0 0 0 0 1
..........................................................................................AGGAGCGTCGCCAGA................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................TGGAGAGTCGGCGCGGGC............................................ 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TCCACCTGTTGACGCCACAGTTCGCCGCGTGCGGGTTCGCGTTCACGATCCTCACCCATTTTTCGCGCCAGCACCACTTGCACTTCCACCTCCTCGCAGTGGTCTGCATCGTTGTCGACCGCATCCTCGTGTCGTGTCGCCCCGTGTCGGAGGACGGCGGTCTGTTCAGTATCGGTATCCGGAGCTCCCCGCCTCAGCCGCGCCCGTCGGCTGCTGGGTAGCGGCGGTAGCTAATGTATGCATGACGGTA
**************************************************..((.((......((...(((.((((((.(((............))))))))))))...))....((((((......)).)))).(((.(((((...))))))))(((((.......((...(((...)))...))..)))))..)).))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
...........................................CCCGATCCTCACCCATT.............................................................................................................................................................................................. 17 1 1 1.00 1 1 0 0 0 0 0
.............................................CGATCCTCACCCATT.............................................................................................................................................................................................. 15 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................................................................................TCGGCTGCTGGGTAGCGGCGGT...................... 22 0 1 1.00 1 0 1 0 0 0 0
........................................GGACCCGATCCTCACCCATT.............................................................................................................................................................................................. 20 3 7 0.86 6 6 0 0 0 0 0
..........................................ACCCGATCCTCACCCATT.............................................................................................................................................................................................. 18 2 5 0.40 2 2 0 0 0 0 0
..............................................GATCCTCACCCATTA............................................................................................................................................................................................. 15 1 6 0.33 2 2 0 0 0 0 0
.........................................GTCACGACCCTCACCCATT.............................................................................................................................................................................................. 19 2 3 0.33 1 0 1 0 0 0 0
........................................GGGCACGGTCCTCACCCATT.............................................................................................................................................................................................. 20 3 4 0.25 1 0 0 0 1 0 0
.........TGACGGCACAGTTCG.................................................................................................................................................................................................................................. 15 1 4 0.25 1 0 0 1 0 0 0
..................................................................................................................................................................................CCAGGGCTCCCAGCCTCAGC.................................................... 20 3 4 0.25 1 0 0 0 0 1 0
...........................................CCCGATCCTCACCCATTA............................................................................................................................................................................................. 18 2 5 0.20 1 1 0 0 0 0 0
........................................GGACCCGATCCTCACCCAT............................................................................................................................................................................................... 19 3 15 0.20 3 3 0 0 0 0 0
............................................ACGACCCTCACCCATT.............................................................................................................................................................................................. 16 1 7 0.14 1 0 0 0 0 0 1
.............................................................ATCGCGCTTGCACCACTTG.......................................................................................................................................................................... 19 3 9 0.11 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................CGGCGGTAGCTCATG.............. 15 1 9 0.11 1 0 0 1 0 0 0
..........................................ACCCGATCCTCACCCAT............................................................................................................................................................................................... 17 2 13 0.08 1 1 0 0 0 0 0
............................................ACGGTCCTCACCCAT............................................................................................................................................................................................... 15 1 15 0.07 1 0 0 0 1 0 0
...............................AGGGATCGCGTTCACG........................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0
.............................................................CTCGCGCTTGCACCACTTG.......................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................................................GTTGCTTGGTAACGGCGGT...................... 19 3 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:10454866-10455115 - dsi_23368 AGGTGGACAACT---GCGGTGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGGAGTGGG--------------------T------AAAAAGCGC-GGTCG------------TGGTGAACGTGAAGGTGGAGGA------GCGTCACCAGACGTAGCAACAGCTGGCGTAG----------------GAGC---------------A---------------------------------------------------------------CA-----------------------------------------------------------------------------------------------GCACAGCGGGGCACAGCCTCCTGCCG---------------------CCA------------------------GACAAGTC-ATAGCCATAG------------GCCT--CGAGGGGCGGA---GTCGGCGCGGGCAGCCGAC----GAC------------------CCATCGCCGCCA---T--C----GATTACAT--------A-----------C--GTACTGCCAT
droSec2 scaffold_15:1710075-1710324 - AGGTGGACAACT---GCGGTGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGGAGTGGG--------------------T------AAAAAGCGC-GGTCG------------TGGTGGACGTGAAGGTGGAGCA------GCGCCACCAGACGTAGGAACAGCTGGCGTAG----------------GAGC---------------A---------------------------------------------------------------CA-----------------------------------------------------------------------------------------------GCACAGCGGGGCACAGCCTCCTGCCG---------------------CCA------------------------GACAAGTC-ATAGCCATAG------------GCCT--CGAGGGTCGGA---GTCGGCGCGGGCAGCGGAC----GAC------------------CCATCGCCGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCAT
dm3 chrX:11006724-11006933 - AGGTGGACAACT---GCGGTGTCAAGCGGCGCACGCCAAAGCGCAAGTGCTAGGAGTGGG--------------------T-------------------------------------------------GGAGCA------GCGTCACCAGACGTAGCAACAGCTGGCGTAG----------------GAGC---------------A---------------------------------------------------------------CAGC---------------------------------------------------------------------------------------------------------ACAGTCTCCTCCCG---------------------CCA------------------------GACAAGTC-ATAGCCATAG------------GCCT--CGAGGGGCGGA---GTCGGCGCGGGCAGCCGAC----GAC------------------CCATCGCCGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCAT
droEre2 scaffold_4690:4124494-4124715 + AGGTGGACAACT---GCGGTGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGGAGTGGG--------------------T------AACGGGAGC-GGACA------------TGGTGGACGTGG---------A------GCGTCACCAGATGCAGCAATAGCTGGGGAAG----------------GAGC---------------A---------------------------------------------------------------CGGCCTC--------------------------------------------------------------------------------------------------------------CTG------------------------CCA------------------------GACGAGTC-ATAGCCATAG------------GCCT--CGAG-GGCGGA---GTCGGCGCGGGCAGCCGAC----GAC------------------CCATCGCCGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCAT
droYak3 X:11120106-11120342 + AGGGGGACAACT---GCGGTGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGGAGTGGG--------------------T------AACGGGAGC-GGACGCGGATGCGAACGCGGTGGACGTGG---------A------GCGTCACCAGATGAAGCAGCAGCTGCAGAAG----------------GAGC---------------A---------------------------------------------------------------CAGCCTC--------------------------------------------------------------------------------------------------------------CTGCTG---------------------CCA------------------------GACAAGTC-ATAGCCATAG------------GCCT--CGAG-GGCGGA---GTCGGCGCGGGCAGCCGAC----TAC------------------CCATCGCCGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCAT
droEug1 scf7180000409631:133750-133953 - AGGGAGACAACT---GCGGTGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGGAGTGGG--------------------A------AAAAGG----------------------------CGTAG---------A---------------------GCTACATCTGGAT-------------------AAGCACACGCTGGATGAGTA---------------------------------------------------------------TATTCTC--------------------------------------------------------------------------------------------------------------CTG------------------------CCA------------------------GAAAAGTC-ATAGCCATAG------------GCCT--CGAG-GGCGGA---GTCGGTGCGGGCAGCCGAC----CAC------------------CCATCGCCGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCAT
droBia1 scf7180000302126:3999493-3999700 - AGGTGGACAACT---GCGGGGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGAAGTGGG--------------------C---------GGGGGC-G--------------------------GG------------------------------AGCAGCAGCTGGAGGAG----------------GAGG---AGGAGGAGGAGGA---------------------------------------------------------------CAGCCTC------------------------CT-----------------------------------------------------------------------------------CCTGCCG---------------------GGA------------------------GACAAGTC-ATAGCCATAG------------GCCT--CGAG-GGCGGA---GTCGGCGCGGGCAGCCGAC----GAC------------------CCATCGCCGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCAT
droTak1 scf7180000415394:892261-892419 - AGGTGGACAACT---GCGGCGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGG-----------------------------------------------------------------------------------------------------------------GAGGATTAGGAGAAG-------GAGC---------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------GACAAGTC-ATAGCCATAG------------G------------CGCA---GTCGGCGCGGGCAGCCGAC----GAC------------------CCATCGCCGCCA---T--C----GATCACATACATACATA-----------C--GTACTGCCAT
droEle1 scf7180000490214:291478-291693 + AGGTGGACAACTCCAGCGGTGTCAAACGGCGCACGCCCAAGCGCAAGTGCTAGC------------------------------------------------------------------------------------------GTCGCCCGGAGAATCTGCATCAGGAGGAG----------------GA---------------------------------------------GGAGGAGGAGAAGGAG------GTGATGGTGGATGCCATCCTC--------------------------------------------------------------------------------------------------------------ATG------------------------CCA------------------------GACAAGTC-ATAGCCATAG------------GCTT--CGAG-GGCGAC---GTCGGCGCGGGCAGCCGAC----GAT------------------CCATCAACGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCAT
droRho1 scf7180000776532:309614-309817 + AGGTGGACAACT---GTGGTGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGGGGTGGG--------------------T------CAA----------------------------GGACGTAG---------A------GCGTCACCCGGAGAATCAGCCACTGGAGGAG----------------G------------------G---------------------------------------------------------------CAGCCTC--------------------------------------------------------------------------------------------------------------CTT------------------------CCA------------------------GACGAGTC-ATAGCCATAG------------GCCT--CGAG-GGCGGA---GTCGGCGCGGGCAGCCGAC----GAC------------------CCATCGCCGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCAT
droFic1 scf7180000453882:958144-958375 - AGGTGGACAACT---GCGGCGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGTGGTTGG--------------------A------CAA----------------------------------------------------------------GGACAAGCAACAGGAGTAG----------------GAAT---------------A-----------------GG----AACAGGAGGAGCAGAAGGAG------CA-----------------------------------------------------------------------------------------GG------------------------------------------AGCAGGAGCAGAAGCAACCTGATCCC------------------------GACCAGTC-ATAGCCATAG------------GCCT--CGATAGGCGGA---GTCGGCGCGGGCAGCCGACGGACGAC------------------CCATCGCCGCCA---TCTC----GGTCACAC--------A-----------C--GTACTGCCAT
droKik1 scf7180000302724:186478-186729 - AGGTGGATAACT---GCGGTGTCAAGCGGCGCACGCCCAAGCGCAAATGCTAGGAGTGCG--------------------A-------------------------------------------GAATCTGGAGGAGACAAAGAGTCAC------------CAGCTGGAGGAT----------------GAGG---ATAGCCACCACGATGGCCTCCTCTTCC------------------------------------------------------TCCGGCCGGACAA--------------------------------------------------------------------------------------------------------------------------------C------------------------AACAAGTC-ATAGCCATAG------------GCCT--CGAC-GGCGGAGTCGTCGGCGCGGGCAGCCGAC----GACGACGAAGACGACAAGAATCCATCGCCGCCA---T--C----GATCACATA-----ATA-----------C--GTACTGCCAT
droAna3 scaffold_13417:907643-907881 + AGGTGGACAACT---GCGGCGTCAAGCGGCGAACGCAGAAGCGCAAGTGCTAGGAGTGCTGGGAGTGGCTCTTGGAGTGGAACTGGAACT-GGAACTGGAAGTGGAAGGGAAAGTGGGAGAGTTGG---------A------GC---ACAAGA---ACGAA-------------------------------------------------------------------------------------------------TA------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATTAATGCATA--AGGATCACCTGGAAGAGTCAATAGCCATAG------------------------------------------GCAGCTGAC----AAC------------------CCATCG---CCA---T--C----GATCATA-------ATACGGATCACGTACGAGTACTGCCAT
droBip1 scf7180000396362:284389-284584 - AGGTGGACAACT---GCGGCGTCAAGCGGCGGACGCCGAAGCGCAAGTGCTAGGAGTGGG--------------------T------ATCGGA----------------------------GTCGG---------A------G------CACAAGAACGAATAGCCGGAATAG----------------GAAT---------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA------GCATTATAGGATCACCTGGAAGAGTCAATAGCCATAG------------------------------------------GCAGCTGAC----CAC------------------CCATCG---CCA---T--C----GATCATA-------ATACG-ATCACGTACGAGTACTGCCAT
dp5 XL_group1a:5702581-5702777 + AGGTCGAGAATT---GCGGTGTGAAGCGCCGGACGCCCAAGCGCAAGTGCTAGGAGCTGG--------------------A------GCT----------------------------------------------------------------------------GGAGC-----------CCCAGCG-------------------------------------GG--------GGGGGAGCGGACGGAAGCGGAACT------------------------------------------------------------------------------------------------------------------------------------------------------------GAA------------------------GTCAAATC-ACAGCCATTAGCCATACCATAGGCCCACAGAA-GGCAGC---AGCGGCGCGGGCAGCCAAT-------------------------ATATCGCTGCCA---T--C----GATCACAT-------------------------ACTGCCAT
droPer2 scaffold_63:241979-242173 - AGGTCGAGAATT---GCGGTGTGAAGCGCCGGACGCCCAAGCGCAAGTGCTAGGAGCTGG--------------------A----------------------------------------------------------------------------GCTGCAGCTGGAGC-----------CCCAGCG-----------------------------------------------GGGGGAGCGGACGGAA------CT------------------------------------------------------------------------------------------------------------------------------------------------------------GAA------------------------GTCAAATC-ACAGCCATTAGCCATAACATAGGCCCACAGAA-GGCAGC---AGCGGCGCGGGCAGCCAAT-------------------------ATATCGCTGCCA---T--C----GATCACAT-------------------------ACTGCCAT
droWil2 scf2_1100000004590:1550943-1550992 - AGGTAGATAATT---GCCGTGTCAAGCGTCGAACGCCCAAACGCAAATGCTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12932:466895-467092 + AGCTGGAGGAGG---ACCACCAGCAGCAGCAG---------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAG----------------CAACACGTGTTGCAGCAGCA--------ACATCACCCACTGGA----GC---AGC-AAC-------------------------AGG------TCAGCTA-------------TCTGCTGTCGCGGCCA---------TATCACAGCAGCAGCAGCAGCAAC------------------------------------------AACAGCAG-------------------------------------------------CAACA------------------------------------------GCAACTCGCCGCTTAC----TAT------------------TTACCACCACCA---G--C----ACCAGC----------A-----------A--CAGCTGCCGC
droMoj3 scaffold_6359:2143305-2143429 - AGGTGGAAAATT---GCGGCGTCAAACGGCGCACGCCCAAACGCAAATGCTAGAAGAAGA--------------------G-----------------------------------------------------------------------------GAACAGTGGGAGGAG----------------GAGA---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-------------------------GCGTCGTCGTCGCCGCCGCCGTCGCAGCTG-------GCC-----------G--GGAACACTGC
droGri2 scaffold_15203:5575235-5575475 - AAATCAACAGCA---GCACCAGCAGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGAGCGTCATCCGC------------------------------------------------------TCAGTTAAAGAGGAGCGCATTCT--GGCCTCGCCCACAAAAATGCTGGCATACCATCAGCAGCAACAGCAGCAGCAGCAGCAGCAAAGGGAAAGGGAGCACAGGGAGCGCGAG----------------------CG------------------------GGAAAGGG-AGAGGGAAAG------------AGAA--AGGGAGAGGGA-----GAGGGAACGTGATAGGG----AAC------------------TGAAGGCAGCCA---G--T----GGACATGG--------A-----------C--ACGTTACCGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGGTGGACAACT---GCGGTGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGGAGTGGG--------------------T------AAAAAGCGC-GGTCG------------TGGTGAACGTGAAGGTGGAGGA------GCGTCACCAGACGTAGCAACAGCTGGCGTAG----------------GAGC---------------A---------------------------------------------------------------CA-----------------------------------------------------------------------------------------------GCACAGCGGGGCACAGCCTCCTGCCG---------------------CCA------------------------GACAAGTC-ATAGCCATAG------------GCCT--CGAGGGGCGGA---GTCGGCGCGGGCAGCCGAC----GAC------------------CCATCGCCGCCA---T--C----GATTACAT--------A-----------C--GTACTGCCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---T--C----GATTACAT--------A-----------C--GTACTGCC..2112.00220000000000000000
......................................................................................................................GAACGTGAAGGTGGAGGA------GCGTCACCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
..................................................................................................................................GGAGGA------GCGTCACCAGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..............................................................................................GC-GGTCG------------TGGTGAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.15300000011010000000
droSec2
AGGTGGACAACT---GCGGTGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGGAGTGGG--------------------T------AAAAAGCGC-GGTCG------------TGGTGGACGTGAAGGTGGAGCA------GCGCCACCAGACGTAGGAACAGCTGGCGTAG----------------GAGC---------------A---------------------------------------------------------------CA-----------------------------------------------------------------------------------------------GCACAGCGGGGCACAGCCTCCTGCCG---------------------CCA------------------------GACAAGTC-ATAGCCATAG------------GCCT--CGAGGGTCGGA---GTCGGCGCGGGCAGCGGAC----GAC------------------CCATCGCCGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................CGTAGGAACAGCTGGCGTAG----------------GA...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTC-ATAGCCATAG------------GCCT--CGAGG.....................................................................................................................2211.0010010
dm3
AGGTGGACAACT---GCGGTGTCAAGCGGCGCACGCCAAAGCGCAAGTGCTAGGAGTGGG--------------------T-------------------------------------------------GGAGCA------GCGTCACCAGACGTAGCAACAGCTGGCGTAG----------------GAGC---------------A---------------------------------------------------------------CAGC---------------------------------------------------------------------------------------------------------ACAGTCTCCTCCCG---------------------CCA------------------------GACAAGTC-ATAGCCATAG------------GCCT--CGAGGGGCGGA---GTCGGCGCGGGCAGCCGAC----GAC------------------CCATCGCCGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................AGCGCAAGTGCTAGGAGTGGG--------------------T-------------------------------------------------GGAGCA------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2818.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................CGCAAGTGCTAGGAGTGGG--------------------T-------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................GTGGG--------------------T-------------------------------------------------GGAGCA------GCGTCACCAGACGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCA---T--C----GATCACAT--------A-----------C--GTACTGC...2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CGCCAAAGCGCAAGTGCTAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........CT---GCGGTGTCAAGCGGCGCACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CAACT---GCGGTGTCAAGCGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................AGTGCTAGGAGTGGG--------------------T-------------------------------------------------GGAGCA------GC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000
..........................................GCAAGTGCTAGGAGTGGG--------------------T-------------------------------------------------GG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.............................................................................................................................................................GCAACAGCTGGCGTAG----------------GA...........................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
........AACT---GCGGTGTCAAGCGGCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................AACAGCTGGCGTAG----------------GAGC---------------A---------------------------------------------------------------C.........................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TAGCAACAGCTGGCGTAG----------------GAG..........................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000
..GTGGACAACT---GCGGTGTCAAGCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000
...TGGACAACT---GCGGTGTCAAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................AAGTGCTAGGAGTGGG--------------------T-------------------------------------------------GGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCAGCCGAC----GAC------------------CCAT............................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................CAGACGTAGCAACAGCTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TAGGAGTGGG--------------------T-------------------------------------------------GGAGCA------GCGTCACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATAG------------GCCT--CGAGGGGCGGA---G...........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................ACGTAGCAACAGCTGGCGTAG----------------.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................AGCAACAGCTGGCGTAG----------------GA...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................AAGCGGCGCACGCCAAAGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TGCTAGGAGTGGG--------------------T-------------------------------------------------GGAGCA------GC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................AAGTGCTAGGAGTGGG--------------------T-------------------------------------------------GGAGCA------GC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.......................................................GTGGG--------------------T-------------------------------------------------GGAGCA------GCGTCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.......CAACT---GCGGTGTCAAGCGGCGCACGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GACAACT---GCGGTGTCAAGCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATAG------------GCCT--CGAGGGGCG.................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................AAAGCGCAAGTGCTAGGAGTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................GTCACCAGACGTAGCAACAGCTGGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ACT---GCGGTGTCAAGCGGCGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CGAGGGGCGGA---GTCGGCGCGGG.................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................................................AGTGGG--------------------T-------------------------------------------------GGAGCA------GCGTCACCAGACGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................GCTAGGAGTGGG--------------------T-------------------------------------------------GGAGCA------GCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................CAGACGTAGCAACAGCTGGCGTAG----------------.............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GGTGGACAACT---GCGGTGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................ACCAGACGTAGCAACAGCTGGCGTAG----------------G............................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................GGAGCA------GCGTCACCAGACGTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................GCGCAAGTGCTAGGAGTGGG--------------------T-------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................GGG--------------------T-------------------------------------------------GGAGCA------GCGTCACCAGACGTAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GTGGACAACT---GCGGTGTCAAGCGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................CGCAAGTGCTAGGAGTGGG--------------------T-------------------------------------------------G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ACT---GCGGTGTCAAGCGGCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................AGACGTAGCAACAGCTGGCGTAG----------------GAGC---------------..........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG------------GCCT--CGAGGGGCGGA---GTCG........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CACGCCAAAGCGCAAGTGCTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..GTGGACAACT---GCGGTGTCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GCAAGTGCTAGGAGTGGG--------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-ATAGCCATAG------------GCCT--CGAGGGGCGGA---............................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................A------GCGTCACCAGACGTAGCAACAGCTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----GAC------------------CCATCGCCGCCA---T--C----GATC.....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................ACCAGACGTAGCAACAGCTGGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GGAGTGGG--------------------T-------------------------------------------------GGAGCA------GCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....GACAACT---GCGGTGTCAAGCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................GACGTAGCAACAGCTGGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----GAC------------------CCATCGCCGCCA---T--C----GATCA....................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---T--C----GATCACAT--------A-----------C--GTACTGC...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................AGACGTAGCAACAGCTGGCGTAG----------------GAGC---------------A---------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........T---GCGGTGTCAAGCGGCGCACG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
........................................................TGGG--------------------T-------------------------------------------------GGAGCA------GCGTCACCAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCATAG------------GCCT--CGAGGGGCGG................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................G--------------------T-------------------------------------------------GGAGCA------GCGTCACCAGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATAG------------GCCT--CGAGGGGCGGA---GTCGG.......................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................GAGCA------GCGTCACCAGACGTAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AAGCGCAAGTGCTAGGAGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................AGGAGTGGG--------------------T-------------------------------------------------GGAGCA------GCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---T--C----GATCACAT--------A-----------C--GTACTGC...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................CGTAG----------------GAGC---------------A---------------------------------------------------------------CAGC---------------------------------------------------------------------------------------------------------ACAGTCT......................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................GCTAGGAGTGGG--------------------T-------------------------------------------------GGAGCA------GCGTCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................CGTAGCAACAGCTGGCGTAG----------------GAGC---------------..........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG------------GCCT--CGAGGGGCGGA---GTCGG.......................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGCGGA---GTCGGCGCGGGC................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
................................................................................................................................................................................................................................................................................CAGC---------------------------------------------------------------------------------------------------------ACAGTCTCCTCCCG---------------------C.........................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATAG------------GCCT--CGAGGGGCGG................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................................................................GTAG----------------GAGC---------------A---------------------------------------------------------------CAGC---------------------------------------------------------------------------------------------------------ACAGTCTC.....................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................CAAGTGCTAGGAGTGGG--------------------T-------------------------------------------------GGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TCTCCTCCCG---------------------CCA------------------------GACAAGTC-......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AGGAGTGGG--------------------T-------------------------------------------------GGAGCA------G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TGGG--------------------T-------------------------------------------------GGAGCA------GCGTCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGGTGGACAACT---GCGGTGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGGAGTGGG--------------------T------AACGGGAGC-GGACA------------TGGTGGACGTGG---------A------GCGTCACCAGATGCAGCAATAGCTGGGGAAG----------------GAGC---------------A---------------------------------------------------------------CGGCCTC--------------------------------------------------------------------------------------------------------------CTG------------------------CCA------------------------GACGAGTC-ATAGCCATAG------------GCCT--CGAG-GGCGGA---GTCGGCGCGGGCAGCCGAC----GAC------------------CCATCGCCGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-ATAGCCATAG------------GCCT--CGAG-GGCGGA---............................................................................................................2511.0011000000
.....GACAACT---GCGGTGTCAAGCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
droYak3
AGGGGGACAACT---GCGGTGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGGAGTGGG--------------------T------AACGGGAGC-GGACGCGGATGCGAACGCGGTGGACGTGG---------A------GCGTCACCAGATGAAGCAGCAGCTGCAGAAG----------------GAGC---------------A---------------------------------------------------------------CAGCCTC--------------------------------------------------------------------------------------------------------------CTGCTG---------------------CCA------------------------GACAAGTC-ATAGCCATAG------------GCCT--CGAG-GGCGGA---GTCGGCGCGGGCAGCCGAC----TAC------------------CCATCGCCGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTC-ATAGCCATAG------------GCCT--CGA.......................................................................................................................2211.00101000000000
...............................................................................................................................................................................................GC---------------A---------------------------------------------------------------CAGCCTC--------------------------------------------------------------------------------------------------------------CTGCTG---------------------CCA------------------------GA.............................................................................................................................................................2111.00101000000000
droEug1
AGGGAGACAACT---GCGGTGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGGAGTGGG--------------------A------AAAAGG----------------------------CGTAG---------A---------------------GCTACATCTGGAT-------------------AAGCACACGCTGGATGAGTA---------------------------------------------------------------TATTCTC--------------------------------------------------------------------------------------------------------------CTG------------------------CCA------------------------GAAAAGTC-ATAGCCATAG------------GCCT--CGAG-GGCGGA---GTCGGTGCGGGCAGCCGAC----CAC------------------CCATCGCCGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCATSizeHit CountTotal NormTotal
No Reads
droBia1
AGGTGGACAACT---GCGGGGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGAAGTGGG--------------------C---------GGGGGC-G--------------------------GG------------------------------AGCAGCAGCTGGAGGAG----------------GAGG---AGGAGGAGGAGGA---------------------------------------------------------------CAGCCTC------------------------CT-----------------------------------------------------------------------------------CCTGCCG---------------------GGA------------------------GACAAGTC-ATAGCCATAG------------GCCT--CGAG-GGCGGA---GTCGGCGCGGGCAGCCGAC----GAC------------------CCATCGCCGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCATSizeHit CountTotal NormTotal
No Reads
droTak1
AGGTGGACAACT---GCGGCGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGG-----------------------------------------------------------------------------------------------------------------GAGGATTAGGAGAAG-------GAGC---------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------------------------GACAAGTC-ATAGCCATAG------------G------------CGCA---GTCGGCGCGGGCAGCCGAC----GAC------------------CCATCGCCGCCA---T--C----GATCACATACATACATA-----------C--GTACTGCCATSizeHit CountTotal NormTotal
No Reads
droEle1
AGGTGGACAACTCCAGCGGTGTCAAACGGCGCACGCCCAAGCGCAAGTGCTAGC------------------------------------------------------------------------------------------GTCGCCCGGAGAATCTGCATCAGGAGGAG----------------GA---------------------------------------------GGAGGAGGAGAAGGAG------GTGATGGTGGATGCCATCCTC--------------------------------------------------------------------------------------------------------------ATG------------------------CCA------------------------GACAAGTC-ATAGCCATAG------------GCTT--CGAG-GGCGAC---GTCGGCGCGGGCAGCCGAC----GAT------------------CCATCAACGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCATSizeHit CountTotal NormTotal
No Reads
droRho1
AGGTGGACAACT---GTGGTGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGGGGTGGG--------------------T------CAA----------------------------GGACGTAG---------A------GCGTCACCCGGAGAATCAGCCACTGGAGGAG----------------G------------------G---------------------------------------------------------------CAGCCTC--------------------------------------------------------------------------------------------------------------CTT------------------------CCA------------------------GACGAGTC-ATAGCCATAG------------GCCT--CGAG-GGCGGA---GTCGGCGCGGGCAGCCGAC----GAC------------------CCATCGCCGCCA---T--C----GATCACAT--------A-----------C--GTACTGCCATSizeHit CountTotal NormTotal
No Reads
droFic1
AGGTGGACAACT---GCGGCGTCAAGCGGCGCACGCCCAAGCGCAAGTGCTAGTGGTTGG--------------------A------CAA----------------------------------------------------------------GGACAAGCAACAGGAGTAG----------------GAAT---------------A-----------------GG----AACAGGAGGAGCAGAAGGAG------CA-----------------------------------------------------------------------------------------GG------------------------------------------AGCAGGAGCAGAAGCAACCTGATCCC------------------------GACCAGTC-ATAGCCATAG------------GCCT--CGATAGGCGGA---GTCGGCGCGGGCAGCCGACGGACGAC------------------CCATCGCCGCCA---TCTC----GGTCACAC--------A-----------C--GTACTGCCATSizeHit CountTotal NormTotal
No Reads
droKik1
AGGTGGATAACT---GCGGTGTCAAGCGGCGCACGCCCAAGCGCAAATGCTAGGAGTGCG--------------------A-------------------------------------------GAATCTGGAGGAGACAAAGAGTCAC------------CAGCTGGAGGAT----------------GAGG---ATAGCCACCACGATGGCCTCCTCTTCC------------------------------------------------------TCCGGCCGGACAA--------------------------------------------------------------------------------------------------------------------------------C------------------------AACAAGTC-ATAGCCATAG------------GCCT--CGAC-GGCGGAGTCGTCGGCGCGGGCAGCCGAC----GACGACGAAGACGACAAGAATCCATCGCCGCCA---T--C----GATCACATA-----ATA-----------C--GTACTGCCATSizeHit CountTotal NormTotal
No Reads
droAna3
AGGTGGACAACT---GCGGCGTCAAGCGGCGAACGCAGAAGCGCAAGTGCTAGGAGTGCTGGGAGTGGCTCTTGGAGTGGAACTGGAACT-GGAACTGGAAGTGGAAGGGAAAGTGGGAGAGTTGG---------A------GC---ACAAGA---ACGAA-------------------------------------------------------------------------------------------------TA------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATTAATGCATA--AGGATCACCTGGAAGAGTCAATAGCCATAG------------------------------------------GCAGCTGAC----AAC------------------CCATCG---CCA---T--C----GATCATA-------ATACGGATCACGTACGAGTACTGCCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................GGGAGTGGCTCTTGGAGTGGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGGAAGAGTCAATAGCCATAG------------------------------------------GC................................................................................................2711.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCATAG------------------------------------------GCAGCTGAC----AAC------------------CCATC...........................................................2711.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAC----AAC------------------CCATCG---CCA---T--C----.........................................2011.001010000
.............................................................................................................GAAAGTGGGAGAGTTGG---------A------GC---.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGAC----AAC------------------CCATCG---CCA---T--C----GATC.....................................2611.001010000
....................................................................................................AGTGGAAGGGAAAGTGGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
........................................................................................................................AGTTGG---------A------GC---ACAAGA---ACGAA-------------------------------------------------------------------------------------------------TA------------------------------------------------------------------------------------------------------------------------------------------------------------GGAATT....................................................................................................................................................................................2811.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATGCATA--AGGATCACCTGGAAGAGT........................................................................................................................................................2811.001000010
droBip1
AGGTGGACAACT---GCGGCGTCAAGCGGCGGACGCCGAAGCGCAAGTGCTAGGAGTGGG--------------------T------ATCGGA----------------------------GTCGG---------A------G------CACAAGAACGAATAGCCGGAATAG----------------GAAT---------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGA------GCATTATAGGATCACCTGGAAGAGTCAATAGCCATAG------------------------------------------GCAGCTGAC----CAC------------------CCATCG---CCA---T--C----GATCATA-------ATACG-ATCACGTACGAGTACTGCCATSizeHit CountTotal NormTotal
No Reads
dp5
AGGTCGAGAATT---GCGGTGTGAAGCGCCGGACGCCCAAGCGCAAGTGCTAGGAGCTGG--------------------A------GCT----------------------------------------------------------------------------GGAGC-----------CCCAGCG-------------------------------------GG--------GGGGGAGCGGACGGAAGCGGAACT------------------------------------------------------------------------------------------------------------------------------------------------------------GAA------------------------GTCAAATC-ACAGCCATTAGCCATACCATAGGCCCACAGAA-GGCAGC---AGCGGCGCGGGCAGCCAAT-------------------------ATATCGCTGCCA---T--C----GATCACAT-------------------------ACTGCCATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCGCTGCCA---T--C----GATCACAT-------------------------ACTGC...2711.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA-GGCAGC---AGCGGCGCGGGCA...............................................................................................2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCATACCATAGGCCCACAG........................................................................................................................2111.0010100000000
..................................................TAGGAGCTGG--------------------A------GCT----------------------------------------------------------------------------GGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.2010000000001
droPer2
AGGTCGAGAATT---GCGGTGTGAAGCGCCGGACGCCCAAGCGCAAGTGCTAGGAGCTGG--------------------A----------------------------------------------------------------------------GCTGCAGCTGGAGC-----------CCCAGCG-----------------------------------------------GGGGGAGCGGACGGAA------CT------------------------------------------------------------------------------------------------------------------------------------------------------------GAA------------------------GTCAAATC-ACAGCCATTAGCCATAACATAGGCCCACAGAA-GGCAGC---AGCGGCGCGGGCAGCCAAT-------------------------ATATCGCTGCCA---T--C----GATCACAT-------------------------ACTGCCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AGCGGCGCGGGCAGC.............................................................................................1811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGC---AGCGGCGCGGGC................................................................................................1811.001100000
droWil2
AGGTAGATAATT---GCCGTGTCAAGCGTCGAACGCCCAAACGCAAATGCTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................GCCCAAACGCAAATGCTAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1911.00100010
droVir3
AGCTGGAGGAGG---ACCACCAGCAGCAGCAG---------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAG----------------CAACACGTGTTGCAGCAGCA--------ACATCACCCACTGGA----GC---AGC-AAC-------------------------AGG------TCAGCTA-------------TCTGCTGTCGCGGCCA---------TATCACAGCAGCAGCAGCAGCAAC------------------------------------------AACAGCAG-------------------------------------------------CAACA------------------------------------------GCAACTCGCCGCTTAC----TAT------------------TTACCACCACCA---G--C----ACCAGC----------A-----------A--CAGCTGCCGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................CACTGGA----GC---AGC-AAC-------------------------AGG------TCAG............................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................GCAGCA--------ACATCACCCACTGGA----GC---A........................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................ACTGGA----GC---AGC-AAC-------------------------AGG------TCAGCTA-------------TCT.........................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................................................................ATCACCCACTGGA----GC---AGC-A....................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................GCAGCAGCA--------ACATCACCCACTGGA----..............................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................GCGGCCA---------TATCACAGCAGC.......................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................TCACCCACTGGA----GC---AGC-AAC-------------------------AGG------TCA.............................................................................................................................................................................................................................................................................................................................2611.001000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................AGCAGCAGCAG----------------CAACACGT.....................................................................................................................................................................................................................................................................................................................................................................................................................1930.331000000000001000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAG-------------------------------------------------CAACA------------------------------------------GCAACT...................................................................................................19190.112000000000100000000000000000000000010000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AGCAAC------------------------------------------AACAGCAG-------------------------------------------------CAACA------------------------------------------.........................................................................................................19200.102000000000000000000000000000002000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAAC------------------------------------------AACAGC...........................................................................................................................................................................................................24200.102002000000000000000000000000000000000000000000000000000000000000
...............ACCACCAGCAGCAGCAG---------------------------------------------------------------------------------------------------------------------------------CAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAAC------------------------------------------AACAGCAG-------------------------------------------------CA......................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................CAGCAAC------------------------------------------AACAGCAG-------------------------------------------------CAACA------------------------------------------GC.......................................................................................................22200.051000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAAC------------------------------------------AACAGCA..........................................................................................................................................................................................................22200.051000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAAC------------------------------------------AACAGCAG-------------------------------------------------C.......................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAAC------------------------------------------AACAGCA..........................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
......................GCAGCAGCAG---------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000010000
................CCACCAGCAGCAGCAG---------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAAC------------------------------------------AACAGCAG-------------------------------------------------C.......................................................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CAGCAGCAAC------------------------------------------AACAGCAG-------------------------------------------------CAAC....................................................................................................................................................22200.051000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAAC------------------------------------------AACAGCA..........................................................................................................................................................................................................20200.051000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................GCAGCAAC------------------------------------------AACAGCAG-------------------------------------------------CA......................................................................................................................................................18200.051000000010000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................AGCAAC------------------------------------------AACAGCAG-------------------------------------------------CAACA------------------------------------------GC.......................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
.................CACCAGCAGCAGCAG---------------------------------------------------------------------------------------------------------------------------------CAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000001000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAAC------------------------------------------AAC..............................................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
........................AGCAGCAG---------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................................................................................................................................................................................................................AGCAGCAAC------------------------------------------AACAGCAG-------------------------------------------------CAACA------------------------------------------GCA......................................................................................................25200.051000000000000001000000000000000000000000000000000000000000000000
droMoj3
AGGTGGAAAATT---GCGGCGTCAAACGGCGCACGCCCAAACGCAAATGCTAGAAGAAGA--------------------G-----------------------------------------------------------------------------GAACAGTGGGAGGAG----------------GAGA---------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAT-------------------------GCGTCGTCGTCGCCGCCGCCGTCGCAGCTG-------GCC-----------G--GGAACACTGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------------------GCGTCGTCGTCGCCGCCGCC............................................2211.001100000
droGri2
AAATCAACAGCA---GCACCAGCAGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTGAGCGTCATCCGC------------------------------------------------------TCAGTTAAAGAGGAGCGCATTCT--GGCCTCGCCCACAAAAATGCTGGCATACCATCAGCAGCAACAGCAGCAGCAGCAGCAGCAAAGGGAAAGGGAGCACAGGGAGCGCGAG----------------------CG------------------------GGAAAGGG-AGAGGGAAAG------------AGAA--AGGGAGAGGGA-----GAGGGAACGTGATAGGG----AAC------------------TGAAGGCAGCCA---G--T----GGACATGG--------A-----------C--ACGTTACCGTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--AGGGAGAGGGA-----GAGGGAACGTG...............................................................................................2411.00101
......................................................................................................................................................................................................................TGAGCGTCATCCGC------------------------------------------------------TCAGTTAAAGAGGAGC................................................................................................................................................................................................................................................................................................................3011.00101
....................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAGCAGCAGCA...........................................................................................................................................................................................................................................27200.05110
.................................................................................................................................................................................................................................................................................................................................................TCAGCAGCAACAGCAGCAGCAGCAGC...............................................................................................................................................................................................................................................26200.05110

Generated: 05/18/2015 at 06:39 PM