ID:

dsi_23351

Coordinate:

3r:10263723-10263872 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-9.4	-9.2	-9.0

Flybase annnotation

five_prime_UTR [3r_10263329_10263722_+]; exon [3r_10263329_10263722_+]; intron [3r_10263723_10283310_+]

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AGCAGCGACGTCCAGTGCATTTTGGTGCAAACTAATTGTTGTTGTGAGAGGTACGCTATACTCGTATGTGTATGTGTGCGGGTGGGTGTTAGTTGCAGGTGTGCGTGCGATTTGATTTGCATTTATGTTGGGGTTTTGTTTTGTCATCTTTTCATCAAGTAATATAAACTAAATAAATGAACTATGTGTGGAAGTTATTTAATATATATATAAATAAAATTCGGAATTATAATATGAGCGTGAAAGCATA **************************************************************....(((((((.(((((.((.....)).))))).))))))).....******************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M025 embryo	O002 Head	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries
........................................GCTGTGAGAGGTACG...................................................................................................................................................................................................	15	1	5	1.20	6	6	0	0	0	0	0	0	0
.......................................CGTTGTGAGAGGTACG...................................................................................................................................................................................................	16	1	1	1.00	1	1	0	0	0	0	0	0	0
................................................................TATGTGTATGTGTGCGGGT.......................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0
............................................................................................TTGCAGGTGTGCGTGCGA............................................................................................................................................	18	0	1	1.00	1	0	0	0	1	0	0	0	0
..........................................TGTGAGAGGTACGGTA................................................................................................................................................................................................	16	1	1	1.00	1	0	1	0	0	0	0	0	0
........................................CTTGTGAGAGGTACG...................................................................................................................................................................................................	15	1	18	0.78	14	14	0	0	0	0	0	0	0
..........................................................................................................................................................................................................TATATATATATCTAACATTCGGA.........................	23	3	2	0.50	1	0	0	0	0	1	0	0	0
.................................................................................................................................................................................TGAACTATGCGTGGA..........................................................	15	1	11	0.36	4	0	0	0	0	0	4	0	0
.......................................GGTTGTGAGAGGTACG...................................................................................................................................................................................................	16	1	3	0.33	1	1	0	0	0	0	0	0	0
........................................TTTGTGAGAGGTACG...................................................................................................................................................................................................	15	1	5	0.20	1	1	0	0	0	0	0	0	0
.........................................TTGTGAGAGGTACGG..................................................................................................................................................................................................	15	1	15	0.20	3	0	0	0	0	0	0	2	1
.......................................................CTATACTCATATGCGTA..................................................................................................................................................................................	17	2	17	0.18	3	0	3	0	0	0	0	0	0
..................................................................................................................................................................................GAACTATGCTTGGAAGTT......................................................	18	2	8	0.13	1	1	0	0	0	0	0	0	0
................................................................................................................................................................................AGGAACTATGTCTGGAA.........................................................	17	2	12	0.08	1	0	0	0	0	0	1	0	0
..............................ACTAAGTGTTGTTGTG............................................................................................................................................................................................................	16	1	15	0.07	1	1	0	0	0	0	0	0	0
..........................................TGTGAGAGGTACGTGA................................................................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0
................................AAATTGTTGTTGTGA...........................................................................................................................................................................................................	15	1	20	0.05	1	0	1	0	0	0	0	0	0

Anti-sense strand reads

TCGTCGCTGCAGGTCACGTAAAACCACGTTTGATTAACAACAACACTCTCCATGCGATATGAGCATACACATACACACGCCCACCCACAATCAACGTCCACACGCACGCTAAACTAAACGTAAATACAACCCCAAAACAAAACAGTAGAAAAGTAGTTCATTATATTTGATTTATTTACTTGATACACACCTTCAATAAATTATATATATATTTATTTTAAGCCTTAATATTATACTCGCACTTTCGTAT ******************************************************************************************************************************************....(((((((.(((((.((.....)).))))).))))))).....**************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body
.................................................................................................................................CCCCAAAACAAGAAAGTA.......................................................................................................	18	2	20	0.10	2	2

Generated: 04/24/2015 at 10:39 AM