ID:

dsi_23327

 Coordinate:

2r:7518403-7518673 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.9 -9.8 -9.6 -9.5

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_23103  2r:7518130-7518151 +
  2. dsi_23327  2r:7518652-7518673 +
star
  1. dsi_23103  2r:7518085-7518103 +
  2. dsi_23327  2r:7518607-7518625 +

Sense Strand Reads

CATGTGCGCAAAGTGTCCGTTTGAATGCGAATCAGATTCGGAGATGCGCAAACATCTGAATGCCCACCATGGAATCAATGACGGAGGTGAGTTAATGAATGATCAATAATTAAGTATCGATTGATTAAAGATATAATTTTGAATTCCACCATTGTTTTTATGGAATAATTCTAATAAGATACATTATATTTTCATTCCAGTGTCCGAGCATGCAAACGAAGTGTTTATTATACGCAGTAAGTAGTTTTGTTATTTTGATTGGGCTGGATACGATTTTCATCGTTGTGGCTATATATGAACACTTCTTTCGTCCAACAATAGAATTACCATTTGAATGCCCGCGCTGCATTCGATCGTTTGCGGCCAAGACC
**************************************************************************************************************************************************************************************************************************************************************((...(((((.(((.......((((....((((....)))))))).......)))))))).....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
........................................................................................................................................................................................................................................................................................................................................................GGCATTCGATCTTTTGCGGC....... 20 2 3 0.67 2 0 0 0 2 0 0 0 0 0 0
.....................TGACTGCGAATCAGA............................................................................................................................................................................................................................................................................................................................................... 15 1 19 0.63 12 0 2 8 0 0 0 0 0 2 0
......................................................................................................................................................................................................................................................................................................................................................GCTGCATTCGATCGTTTGCGG........ 21 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
....................TTGAATGCGAATCGGATTCGGA......................................................................................................................................................................................................................................................................................................................................... 22 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0
..............................ATCGGATTCGGAGATGCGCAAGCATT........................................................................................................................................................................................................................................................................................................................... 26 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0
......................................................TCTGAATGCCCATCATGG........................................................................................................................................................................................................................................................................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................CACTTCTTTCGTCCAACAATAG.................................................. 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................TTGATTGGGCTGGATACGA.................................................................................................. 19 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
............................................TGCGCAAGCATCTGAATGCC................................................................................................................................................................................................................................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..TGTGCGCAAAGTGTCCGTTTGAATG........................................................................................................................................................................................................................................................................................................................................................ 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................GTAAGTAGTTTTGTTATTTTGATTAGG............................................................................................................ 27 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.....................TGAATGCGAATCGGATTCGGAGATG..................................................................................................................................................................................................................................................................................................................................... 25 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................TGCGCTGCAGTGGATCGTTT............ 20 3 11 0.27 3 0 0 0 0 0 0 0 3 0 0
........................................................................................................................................................................................................................CGAAGAGTTTATTATCGGC........................................................................................................................................ 19 3 20 0.10 2 0 0 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................GGTCTGGATACGATT................................................................................................ 15 1 16 0.06 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................ATGGAATCATTCTAA..................................................................................................................................................................................................... 15 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTGTTTATTATATGCA....................................................................................................................................... 16 1 18 0.06 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................ATTCTGGTTGGGCTGGA....................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
............................................................TGCCCACCCTGGAATCGTT.................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................GATAGATTAAAGATATC............................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..................GTCTGACTGCGAATCAGA............................................................................................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................AGAGATAATTTTGAAATC................................................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTACACGCGTTTCACAGGCAAACTTACGCTTAGTCTAAGCCTCTACGCGTTTGTAGACTTACGGGTGGTACCTTAGTTACTGCCTCCACTCAATTACTTACTAGTTATTAATTCATAGCTAACTAATTTCTATATTAAAACTTAAGGTGGTAACAAAAATACCTTATTAAGATTATTCTATGTAATATAAAAGTAAGGTCACAGGCTCGTACGTTTGCTTCACAAATAATATGCGTCATTCATCAAAACAATAAAACTAACCCGACCTATGCTAAAAGTAGCAACACCGATATATACTTGTGAAGAAAGCAGGTTGTTATCTTAATGGTAAACTTACGGGCGCGACGTAAGCTAGCAAACGCCGGTTCTGG
**************************************************((...(((((.(((.......((((....((((....)))))))).......)))))))).....))************************************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR902009
testis
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
............................................ACGCGTTTGTAGACT........................................................................................................................................................................................................................................................................................................................ 15 0 4 0.25 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................AACTTAAGATGGTAACGGAAA.................................................................................................................................................................................................................... 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................AGGATTATTCTAGGTAATA........................................................................................................................................................................................ 19 2 7 0.14 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................TGAAGACAGCAGGTT........................................................ 15 1 9 0.11 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TAAGGTCACAAGATGGTAC............................................................................................................................................................... 19 3 10 0.10 1 0 0 0 1 0 0 0 0 0
..........................................................................AGTTACTTCTTCCACTCAGT..................................................................................................................................................................................................................................................................................... 20 3 10 0.10 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................TAATATAAAACTAAGGT............................................................................................................................................................................ 17 1 10 0.10 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................GGTAACAGGCTGGGACGTT............................................................................................................................................................ 19 3 16 0.06 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................................TGAAGAAAGGAGGTT........................................................ 15 1 17 0.06 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................AAAAGTAAGGTGACAGT...................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................................AAAATGAAGGTTACAGGCT.................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................AAGAAAGCAGTTTGT...................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................AGTAAGGTGACAGGCGCGA................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................GGCAGGTTGTTATCTTAGA............................................. 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0
........................................CTCTACGAGATTGTTGACT........................................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:7518353-7518723 + dsi_23327 CATGTGCGCAAAGTGTCCGTTTGAATGCGAATCAGATTCGGAGATGCGCAAACATCTGAATGCCCACCATGGAATCAATGACGGAGGTGAGTTAAT-GAATGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA------TAATTAAGTATCGATTGATTAAAGATA--TAATTTTGAATTCCACCATTGTTTTTATG----------------------------------------------GAATAATTCTAA---------T---AAGATAC--------ATTATATTTTCATTCCAGTGTCCGAGCATGCAAACGAAGTGTTTATTATACGCAGTAAGTAGTT---------------------TT-GTT---------------------ATTTT------------------------------------------------------------------GATTGGGCT----------GGATACGATTT--TCATC-------------G-TTGTGGCT----------------------------------------------------AT---ATATGAA--------------CACTT-CTTTCGTCCAACAATAGAATTACCATTTGAATGCCCGCGCTGCATTCGATCGTTTGCGGCCAAGACC
droSec2 scaffold_1:4365176-4365545 + CATGTGCGCTAAGTGTCCGTTTGAATGCGAATCGGATTCGGAGATGCGCAAGCATCTGAATGCCCACCATGGAATCAATGACGGAGGTGAGTTAT--GAATGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA------TAATTAAGTATCGATTGATTAAAGATA--TAGTTTTTAATTCCACCATTGTTTTTATG----------------------------------------------GAATAATTCTAA---------T---AAGATAA--------ATTATATTTTCATTCCAGTGTCCGAGCATGCAAACGAAGTGTTTATTATACGCAGTAAGTAGTT---------------------TT-GTT---------------------ATTTT------------------------------------------------------------------GATTGGGCT----------GGATACGACTT--TAATC-------------G-TTGTGGCT----------------------------------------------------AT---ATATGAA--------------CACTT-CTTTCGTCCAACAACAGAATTACCATTTGAATGCCCGCGCTGCATTCGATCGTTTGCGGCCAAGACC
dm3 chr2R:6778168-6778541 + CATGTGCGCAAAGTGTCCGTTTGAATGCGAATCGGATTCGGAGATGCGCAAGCATCTGAATGCCCACCATGGAATCAATGACGGAGGTGAGTAAAT-CAATGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA------TTATTAAGCATTGATAGATTAAAGATA--TAATTTTTAATTCTACCATTGTTTTTATG----------------------------------------------AAATAATTCTAA---------T---AAGATAA--------ATCATATTTTCATTCCAGTGTCCGAGCATGCAAACGAAGTGTTTATCATACGCAGTAAGTAGTT---------------------TT-GTT---------------------ATTTT------------------------------------------------------------------GATAAGGTT----------TGAAACGATTT--TCATC-------------G-TTGTGGCT----------------------------------------------------ATGACATATGAA--------------CTCAT-CTTTCGTCCAACAACAGAATTACCATTTGAATGTCCGCGCTGCATTCGATCGTTTGCGGCCAAGACC
droEre2 scaffold_4845:18996543-18996904 - CATGTGCGCAAAGTGTCCGTTTGAATGCGAATCAGAGTCGGAGATGCGCAAGCATCTGAATGCCCACCATGGGATTAATGAAGGAGGTGGGTAAAC-AAATTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGAA---T-----------------------------------------G-T-----------------TATGTTTCCTTTTCATTTGAATTCTTCTCAA------TTATTAAGT--------------------------------------TTGTTTGTTTG----------------------------------------------GAATTGTACTAA---------T---ATGATAA--------ATCATATTTTCATTTCAGTATCTGAGCATGCAAACGAAGTGTTTATCATACGCAGTAAGTAATT---------------------CT-CTT---------------------ATATT------------------------------------------------------------------GATTGGTTT----------TAAAAC---------------------AGGAAGA-----------------------------------------------------------AT---ATATGAATA-------------ACCT-CCTATATCCAACAACAGAATTACCATTCGAATGCCCGCGCTGCATTCGATCATTTGCGGCGAAGACC
droYak3 2R:2350433-2350863 - CATGTGCGCCAAGTGTCCGTTCGAGTGCGAATCAGATTCAGAGATGCGCAAGCATCTGAATGCCCACCATGGGATTAATGAAGGAGGTGAGTAAAC-AATATATCAACAAATGTGAAGCCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------CTTGTAGTTTTTCTATCATTAATGATTATA-------TTCATTCCAATTATTGTCAA------TTAATAAT------TTTATTAAAGGTA--TAATTTATATTTATTCCTATGTTCTTATG----------------------------------------------GAATTTTTCTAA---------T---ATGATCA--------ATTATATTTTCATTTTAGTATCCGAGCATGCAAACGAAGTGTTTATCATTCGCAGTAAGTAATT---------------------CT-GTT---------------------ATTTT------------------------------------------------------------------GATTGGTTT----------AGAAACCATTT--ACTTC-------------T-TTATGGCT----------------------------------------------------TT---ATATTAA--------------TACCT-CTTAAATCCAACAACAGAATTACCATTTGAATGCCCGCGCTGCATTCGGTCATTTGCTGCTAAGACC
droEug1 scf7180000409672:4233569-4233961 - AATGTGTGCCAAATGTCCGTATGAGTGCGAATCAGAAGAGGATATGCGGAAGCATTTGAATGCTCATCACGGCATAAACGATGGAGGTGTGTAGTT----------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTTCTTACTTGAACGTTGCAATTTCAATAAGCTGGATATACTAT------------------------------------------CAATAAG---T-----------------------------------------G-T-------------------------------------------------------------------------------------ATTTTTTATTTTACCATCTTTATTATG----------------------------------------------AATTATTTTTAA---------C---ATTTTTT--------ATGATCTTTTTCTTTCAGTGTCTGCTCAAGCCAACGAGGTGTTTATCATACGCAGTAAGTACCC---------------------TT-TTC---------------------A--------------------------------------GTCAT------------------G--------T----------------------------------------------------------------------------ACTCATTTCTAAACCCATT-TAGTACTGGGATCAACT---ATAATAA--------------AACTT-TCGCATTCTATCCCCAGAACTACCATTCGAATGTCCGCGCTGCATTAGATCGTTTGCAGCTAAGACA
droBia1 scf7180000301506:497928-498371 + CATGTGCGCCAAATGTCCTTTCGAGTGCGAATCAGATGCGGACATGCGGCAGCATCTGAATGCCCATCACGGGATTAATGACGGAGGTAAGTAAAT-AATCG-----TAACTGTCAAGT--------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCAACTTCATATTCAATCATAAAAG-----------------------------------------------------------------------------ATTCTA-------ACCATTCGT---------------------GCAGA--------------------------------------TTATTTGTTTGCTAATAAACTAGGTGGAGCTTCAAGTACGCTTACCATACCATTAAAC-------TTAATTAATAAGT-ATTAT-----TCCCTTTTATACTTCATTATTTTCAGTGTCTCTACATGCCAACGAGGTGTTTATTATTCGCAGTAAGTAACT---------------------TG-GCC---------------------A--------------------------------------GTCAT----------------------------------------------------------------------------------------------CAAACCAATTACTAACTTTTAACGTCCCT-ACGTTCTT--ATCCATT---ATTCTAA--------------TACGT-TCGCTATTTATTCACAGAACTTCCTTTTGAATGCCCGCGCTGCATTCGATCTTTTGCGGCCAAAAGC
droTak1 scf7180000415870:15265-15467 + G--------------------------------------------------------------------------------------TAAATTAATAGAATGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAAGGGTATTTAAGTTTCGGCTGACCGAAGCTA--GCT-----------TCCTTTCTTGTTATG----------------------------------------------AATAATTATTAA---------T---AT---------------TCTATTTTGCTTTCAGTGTCCGTCCATGCCAATGAAGTGTTTATTATACGCAGTAAGTAACTTGATGA--------------------G---------------------AGCTT------------------------------------------------------------------TACTGAGCT-------------TACGTTGTGTCAGTT-------------A-TG-------------------------------------------------------------A--------CAGT--------TATATAT-----------------------------------------------------------------AAA
droEle1 scf7180000491201:226440-226676 + TATGTGCGCAAAATGTCCGTTTGAGTGCGAATCAGATGCGGACATGCGAAAGCATTTGAATGCCA---ACGGCATCAACGATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--------ATTATCTGTTGCTTTCAGTGTCTGTGCATGCCAACGAGGTGTTTATTATACGCAGTAAGTAATATGTTGCAAATCAAACATTC--AC-AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAATTTCGCCACAGAACTACCCTTCGAGTGCCCACGCTGCATTCGATCGTTTGCGGCTAAGAGC
droRho1 scf7180000777760:26044-26505 + CATGTGCGCTAAATGTCCGTTCGAGTGCGAATCGGATGCTGATATGCGGAAGCATTTGAATGCCCACCACGGCATCAATGATGGTGGTAAGTAAAG----------------------T--------------------TGATTTAGACTTTCATTTGTAATAAGTATTCACTTTTGGACAAACAAGTTAAATATAGTTTTAATGCATTTAATAAATTTATTTTTACACTACAAAATATTTTTAAAAAGTATTGTTGTAATAATATTTAAGGGTTTTTATAACGTTTTATTAATAACCAC-------------------------AA------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTCTATTGATTGCAGTGTCAGTGCATGCCAATGAGGTGTTTATTATACGCAGTAAGTGATT---------------------AC-AAAA-TTTTCAGATTGACCTATTTATCGTAATTTTAAACCTATCTAACTA--------------------------------------------------------------------------------------------------------------------------------------------------------AACCATT---AAATTTA--------------CATTT-CCGTTATCTATCCACAGAACTACCCTTCGAGTGCCCACGCTGCATTCGATCGTTTGCGGCTAAGAGC
droFic1 scf7180000454066:902477-902812 - GATGTGCGCAAAATGTCCGTTTGAGTGCGAAGCGGATGCGGAAATGAAGAAGCATTTAAATGCCCACCACGGCATCAATGATGGTGGTAAGTTTCA----------------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------G-A-----------------CT--TCAA----------------------------------------------------TCGA--TTT-----------TACGTTGATTTCATC----------------------------------------------AATACTAATTTA---------T---ATATTAC--------ATCTATTTTTCCTTTCAGTGTCCGTGCATGCAAACGAGGTGTTTATTATACGCAGTAAGTAAAC---------------------CTTTTC---------------------A--------------------------------------CTCGC------------------T--------A----------------------ACA-----------CAATTTTGT-AT-T-ATAACT--------------------------------------CATGTCCTG-------T--A--------AAAC--------TAAAACT-TCCTTAAACTTTTTTAGAACTACCTTTTGAGTGCCCGCGCTGCATTCGCTCATTTGCGGCCAAGAGC
droKik1 scf7180000302476:1141727-1142159 + TATGTGCGCCAAATGCCCCTTTGAGTGCGAGGCGGATGGAGAAATGCGAAAGCATCTGAATGCCCATCACGGCATTAACGATGGACGTAAGTCAGG-AAAA-----------------CCATAGTTAAACAAAAGCTTTTGATTAAGGGTT-----------------------------------------------------------------------------------------------------------------------------------------------------TGACTTTATAT-----------------------------TAACTCTCATTAAGGGTTTGACTTTATATTTAAATAGAAAAGAATAAGACAAGTTG---GCAATTTTGAAACTTTTATCATTAATAATCTATTCACTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT----TTGCTCTTAATTACAGTGTCCATACATGCCAACGAGGTCTTCATTATACGCAGTAAGTATCG------------------CAA---G------------------------------------------------------TC---------ATTATAGAAACCTCCTTTCA-------------------------------------------------------AATATAA-AAACCCAC-----------------TAACTCTTTTCCTCTCTCAT-----------------------------------------------GATCTCTAATCACAGAATTGCCTTTCGAGTGCCCGCGCTGTATTCGATCGTTTGCTGCCAAGGCC
droAna3 scaffold_13266:13001758-13002135 - CATGTGTGCAAAGTGTCCGTTCGAGTGTGAGCCGGATGGAGAGATGCGAAAGCACTTGAATGCCCACCACGGCATCAACGATGGGGGTAAATTAAT-AAAA-----------------CTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAT------ATAATAAAATGTA--TA-------------------------AA----------------------------------------------GAATCTTTCTAATTAAAAAAT-ATCAT-----TC--------TTTCCCCCCTCTATAGTATCAGTGCATGCAAACGAAGTGTTTATTATACGCAGTAAGTACAT------------------TTT---G------------------------------------------------------GCATAGCA---------GGT--GCCTTTAACACCCTTGTTGCATGGCTTTGAAACCCATTAAAACCATTA--ACATC-------------T-GCATGGCA-TGGCGTTCAATAAATTA---------------------------------------------------------------------AAATCTATTTCCAGAGCTGCCCTTTGAGTGCCCGCGATGCATTCGCTCGTTTGCGGCCAAGAGC
droBip1 scf7180000396730:921215-921575 + CATGTGTGCAAAGTGTCCGTTCGAGTGTGAGCCGGAGGGAGAGATGCGAAAGCATTTAAATGCCCACCACGGCATCAACGATGGAGGTAACAAAAA-AAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA---------------------------------------------------------------------------------------------------TAAT--------------------TTA--TA-------------------------AA----------------------------------------------GAATCTTTCTTA---AAAAAT-CGTAT-----TC---------TTTTCCTCTTTTTAGTATCCGTTCATGCAAACGAAGTGTTTATCATACGCAGTAAGTACAT------------------TTT---G------------------------------------------------------GCATTAAA---------GGT--GCCTCTTATACCCTCATTGCATGGCTTTGAATCCCATTAAAACCATTA--ACATC-------------T-GCATGGCA-TGGCATTTAATAAATTA---------------------------------------------------------------------AAATCTATTTCCAGAACTGCCCTTTGAGTGCCCGCGATGCATTCGCTCGTTTGCGGCCAAGAGC
dp5 3:7948053-7948439 + GATGTGTGCCAAGTGTCCGTTTGAGTGCGAATTGGATACGGAAATGCGAAAGCATCTGAATGCGCATCACGGCATCAATGATGGTGGTAAGTGTAG----------------------CCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAAAGG-------------------------------------------------------CAAAGAG---T-----------------------------------------G-C-----------------CT--TCTCCCTT----------------------------------------------------------------------------TCATATG----------------------------------------------AAGCCATTTTAA---------A---AC-----TATATTTTGCACACTATTCGTTACAGTATCCGTGCATGCCAACGAGGTGTTTATTATACGCAGTGAGTAGCG---------------------TT-AAGAA-------ATTAATTAATTTATTTTGAAGGGAGATCTATCTGATCATCTCAGTGCATTA---------GAT--GTCCTTACC-------------------------------------------------------AGTAGGA-GTCCCCAG-----------------------------------------------------A--------TAGC--------TATATAT-TCCTTGTCTATTCCCAGAACTACCCTTTGAGTGTCCGCGATGCATTCGCTCATTTGCGGCCAAGAGC
droPer2 scaffold_4:1859157-1859543 + GATGTGTGCCAAGTGTCCGTTTGAGTGCGAATTGGATACGGAAATGCGAAAGCATCTGAATGCGCATCACGGCATCAATGATGGTGGTAAGTGTAG----------------------CCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAAAGG-------------------------------------------------------CAAAGAG---T-----------------------------------------G-C-----------------CT--TCTCCCTT----------------------------------------------------------------------------TCATAAA----------------------------------------------AAGCCATTTTAA---------A---AC-----TATATTTTGCACACTATTCCTTACAGTATCCGTGCATGCCAACGAGGTGTTTATTATACGCAGTGAGTAGCG---------------------TT-ACGAA-------ATTGATTTATTTATTTTGAAGGGAGATCTATCTGATCAGATCAGTGCATTA---------GAT--GTCCTTACC-------------------------------------------------------AGTAGGA-GTGCCCAG-----------------------------------------------------A--------TAGC--------TATATAT-TCCTTGTCTATTCCCAGAACTACCCTTTGAGTGTCCGCGATGCATTCGCTCATTTGCGGCCAAGAGC
droWil2 scf2_1100000004514:2705348-2705512 + TTTTTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTCCGTACATGCCAATGAAGTGTTTATTATACGTAGTAAGTATTT------------------GAT---G------------------------------------------------------AT-----------------------ATT-----------------------------------------A--AT------------AAT--TA-GTGGGCAA-----------------------------------------------------G--------TTGCTAA---TG--TATTT-TGATTTTATCTCTCTAGAATTGCCATTTGAGTGCCCACGTTGTATACGTTCGTTTGCTGCCAAAAGG
droVir3 scaffold_12875:6071099-6071414 - AATGTGTGCCAAGTGTCCCTTTGAGTGCGAACAGGAGGGTGAAATGCGTAAGCATCTAAATGCACATCATGGCATCAACGATGGTGGTAAGTAAAT----------------------TTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATATACT-------------------------------------------------------CAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATATAAA---------AATCAACATTAT---------T---GT------------TCCATTTTAATGCTCACAGTTTCTTTGCATGCCAACGAGGTGTTTATCATACGCAGTAAGTTAAG---------------------C---------------------CATTTAATGTAAT-------CCGT----------------------------------------------------------------------------------------------------------TTGAATAT-----------------------------------------------------T--------TTACTTAACCAATATGTAT--AAACAT-TCTACTTAGAACTGCCCTATGACTGTCCACGCTGCATTCGCTCATTTGCGGCCAAGCGC
droMoj3 scaffold_6496:23970452-23970762 + AATGTGTGCTAAATGTCCATTTGAATGCGAACAGGAGGGTGAAATGCGCAAACATTTAAGTGCGCATCATGGCATTAATGATGGTGGTAAATATAT----------------------TTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAATT-------------------------------------------------------AAAA---CTA---------------------------------------------------------------------------------------------------CATT--------------------T-AAACA-------------------------AA----------------------------------------------CA---------------------------------ATTTTCCACGAAAATATGTACAGGGTCTACGCATGCCAATGAGGTGTTTATCATACGCAGTAAGTAACA---------------------AT-ATT---------------------GTAAT------------------------------------------------------------------AAC--------------------------A--ATATT-------------T-ATAAAACA-TGA---------------------------------------------------A--------TTATTGA---AG--CAATTTCTTTCATCT--GAGTAGAATTGCCTTATGACTGTCCACGCTGTATTCGGTCCTTTGCGGCTAAGCGC
droGri2 scaffold_15112:972971-973281 - GATGTGCGCGAAGTGTCCCTTTGAATGTGAGCTGGATGTGGATATGCGCAAGCATTTAAATGCCCATCATGGCATCAATGATGGCGGTAAGCTAAT----------------------TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATT-------------------------------------------------------TATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT-TATATA---------TAATAACAT-------------GATCT-----TG---------TTTTTACCTAAACAGTTTCCATTCATGCCAACGAAGTGTTTATCATACGCAGTAAGTTGAA------------------CAT---A------------------------------------------------------AG-----------------------ATT-----------------------------------------C--TT------------AAA--GG-TTTTACTT-----------------------------------------------------G--------TTGCTTAATCGGAAT-CTT-TATAAATTCTCCTCAAGAACTGCCCTATGAGTGTCCACGCTGCATTCGTTCATTTGCGGCAAAGCGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CATGTGCGCAAAGTGTCCGTTTGAATGCGAATCAGATTCGGAGATGCGCAAACATCTGAATGCCCACCATGGAATCAATGACGGAGGTGAGTTAAT-GAATGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA------TAATTAAGTATCGATTGATTAAAGATA--TAATTTTGAATTCCACCATTGTTTTTATG----------------------------------------------GAATAATTCTAA---------T---AAGATAC--------ATTATATTTTCATTCCAGTGTCCGAGCATGCAAACGAAGTGTTTATTATACGCAGTAAGTAGTT---------------------TT-GTT---------------------ATTTT------------------------------------------------------------------GATTGGGCT----------GGATACGATTT--TCATC-------------G-TTGTGGCT----------------------------------------------------AT---ATATGAA--------------CACTT-CTTTCGTCCAACAATAGAATTACCATTTGAATGCCCGCGCTGCATTCGATCGTTTGCGGCCAAGACCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCATTCGATCGTTTGCGG........2120.50101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTT-CTTTCGTCCAACAATAG..................................................2220.50100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------------------------------------------------------------------GATTGGGCT----------GGATACGA........................................................................................................................................................................................1920.50100100000000000000
..TGTGCGCAAAGTGTCCGTTTGAATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50100000001000000000
droSec2
CATGTGCGCTAAGTGTCCGTTTGAATGCGAATCGGATTCGGAGATGCGCAAGCATCTGAATGCCCACCATGGAATCAATGACGGAGGTGAGTTAT--GAATGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA------TAATTAAGTATCGATTGATTAAAGATA--TAGTTTTTAATTCCACCATTGTTTTTATG----------------------------------------------GAATAATTCTAA---------T---AAGATAA--------ATTATATTTTCATTCCAGTGTCCGAGCATGCAAACGAAGTGTTTATTATACGCAGTAAGTAGTT---------------------TT-GTT---------------------ATTTT------------------------------------------------------------------GATTGGGCT----------GGATACGACTT--TAATC-------------G-TTGTGGCT----------------------------------------------------AT---ATATGAA--------------CACTT-CTTTCGTCCAACAACAGAATTACCATTTGAATGCCCGCGCTGCATTCGATCGTTTGCGGCCAAGACCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCGAGCATGCAAACGA.....................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACCATTTGAATGCCCGCG............................2111.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTCCAACAACAGAATT..............................................2011.0011000
..................GTTTGAATGCGAATCGGATTCGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
dm3
CATGTGCGCAAAGTGTCCGTTTGAATGCGAATCGGATTCGGAGATGCGCAAGCATCTGAATGCCCACCATGGAATCAATGACGGAGGTGAGTAAAT-CAATGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA------TTATTAAGCATTGATAGATTAAAGATA--TAATTTTTAATTCTACCATTGTTTTTATG----------------------------------------------AAATAATTCTAA---------T---AAGATAA--------ATCATATTTTCATTCCAGTGTCCGAGCATGCAAACGAAGTGTTTATCATACGCAGTAAGTAGTT---------------------TT-GTT---------------------ATTTT------------------------------------------------------------------GATAAGGTT----------TGAAACGATTT--TCATC-------------G-TTGTGGCT----------------------------------------------------ATGACATATGAA--------------CTCAT-CTTTCGTCCAACAACAGAATTACCATTTGAATGTCCGCGCTGCATTCGATCGTTTGCGGCCAAGACCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATTCGATCGTTTGCGGC.......2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATTTGAATGTCCGCGCTG.........................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATTTGAATGTCCGCGCTGCA.......................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000010
.............................AATCGGATTCGGAGATGCGCAAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GCGAATCGGATTCGGAGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
..............................ATCGGATTCGGAGATGCGCAAGCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................ATGGAATCAATGACGGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................TGCGAATCGGATTCGGAGATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTTGAATGCGAATCGGATTCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000
..TGTGCGCAAAGTGTCCGTTTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.................................................AAGCATCTGAATGCCCACCATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................CCATGGAATCAATGACGGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................AATCGGATTCGGAGATGCGCAAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................ATGCGCAAGCATCTGAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTCGATCGTTTGCGGCCAAGACC2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATTTGAATGTCCGCGCTGC........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCATTTGAATGTCCGCGCTG.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGTCCGAGCATGCAAACG......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....GCGCAAAGTGTCCGTTTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATCGTTTGCGGCCAAGA..2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CATGTGCGCAAAGTGTCCGTTTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCATTTGAATGTCCGCGCTGCATT.....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..............................ATCGGATTCGGAGATGCGCAAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCAGTAAGTAGTT---------------------TT-GTT---------------------..........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
................................CGGATTCGGAGATGCGCAAGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCATTTGAATGTCCGCG............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGCGAATCGGATTCGGAGATGCGCAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................TTCGGAGATGCGCAAGCATCTGAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TCTGAATGCCCACCATGGAATCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GATTCGGAGATGCGCAAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCATGCAAACGAAGTGTT...............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACGCAGTAAGTAGTT---------------------TT-..................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
CATGTGCGCAAAGTGTCCGTTTGAATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTGAATGTCCGCGCTG.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...............................TCGGATTCGGAGATGCGCAAGCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGAATGCGAATCGGATTCGGAGATG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGCT----------------------------------------------------ATGACATATGAA--------------C........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCAGTAAGTAGTT---------------------TT-G.................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...................TTTGAATGCGAATCGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTCGATCGTTTGCGGCC......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................TGCGCAAGCATCTGAATGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAA--------------CTCAT-CTTTCGTCCA.........................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................ATCAATGACGGAGGTGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGAGCATGCAAACGAAGTGTT...............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTTGAATGCGAATCGGATTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGATCGTTTGCGGCC......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAA--------ATCATATTTTCATTCCAG........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TGCCCACCATGGAATCAATGACGGAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGAA--------------CTCAT-CTTTCGTCC..........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACATATGAA--------------CTCAT-CTTTC..............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGAGCATGCAAACGAAG...................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCGCGCTGCATTCGATCGTTTG...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droEre2
CATGTGCGCAAAGTGTCCGTTTGAATGCGAATCAGAGTCGGAGATGCGCAAGCATCTGAATGCCCACCATGGGATTAATGAAGGAGGTGGGTAAAC-AAATTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACGAA---T-----------------------------------------G-T-----------------TATGTTTCCTTTTCATTTGAATTCTTCTCAA------TTATTAAGT--------------------------------------TTGTTTGTTTG----------------------------------------------GAATTGTACTAA---------T---ATGATAA--------ATCATATTTTCATTTCAGTATCTGAGCATGCAAACGAAGTGTTTATCATACGCAGTAAGTAATT---------------------CT-CTT---------------------ATATT------------------------------------------------------------------GATTGGTTT----------TAAAAC---------------------AGGAAGA-----------------------------------------------------------AT---ATATGAATA-------------ACCT-CCTATATCCAACAACAGAATTACCATTCGAATGCCCGCGCTGCATTCGATCATTTGCGGCGAAGACCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAACGAAGTGTTTATCATACGCA....................................................................................................................................................................................................................................................................................................................................................2611.0011000000
droYak3
CATGTGCGCCAAGTGTCCGTTCGAGTGCGAATCAGATTCAGAGATGCGCAAGCATCTGAATGCCCACCATGGGATTAATGAAGGAGGTGAGTAAAC-AATATATCAACAAATGTGAAGCCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------CTTGTAGTTTTTCTATCATTAATGATTATA-------TTCATTCCAATTATTGTCAA------TTAATAAT------TTTATTAAAGGTA--TAATTTATATTTATTCCTATGTTCTTATG----------------------------------------------GAATTTTTCTAA---------T---ATGATCA--------ATTATATTTTCATTTTAGTATCCGAGCATGCAAACGAAGTGTTTATCATTCGCAGTAAGTAATT---------------------CT-GTT---------------------ATTTT------------------------------------------------------------------GATTGGTTT----------AGAAACCATTT--ACTTC-------------T-TTATGGCT----------------------------------------------------TT---ATATTAA--------------TACCT-CTTAAATCCAACAACAGAATTACCATTTGAATGCCCGCGCTGCATTCGGTCATTTGCTGCTAAGACCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................CAACAAATGTGAAGCCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
........................................................................................................................AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------CTTGTAGTTTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000001
droEug1
AATGTGTGCCAAATGTCCGTATGAGTGCGAATCAGAAGAGGATATGCGGAAGCATTTGAATGCTCATCACGGCATAAACGATGGAGGTGTGTAGTT----------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTTCTTACTTGAACGTTGCAATTTCAATAAGCTGGATATACTAT------------------------------------------CAATAAG---T-----------------------------------------G-T-------------------------------------------------------------------------------------ATTTTTTATTTTACCATCTTTATTATG----------------------------------------------AATTATTTTTAA---------C---ATTTTTT--------ATGATCTTTTTCTTTCAGTGTCTGCTCAAGCCAACGAGGTGTTTATCATACGCAGTAAGTACCC---------------------TT-TTC---------------------A--------------------------------------GTCAT------------------G--------T----------------------------------------------------------------------------ACTCATTTCTAAACCCATT-TAGTACTGGGATCAACT---ATAATAA--------------AACTT-TCGCATTCTATCCCCAGAACTACCATTCGAATGTCCGCGCTGCATTAGATCGTTTGCAGCTAAGACASizeHit CountTotal NormTotal
No Reads
droBia1
CATGTGCGCCAAATGTCCTTTCGAGTGCGAATCAGATGCGGACATGCGGCAGCATCTGAATGCCCATCACGGGATTAATGACGGAGGTAAGTAAAT-AATCG-----TAACTGTCAAGT--------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTCAACTTCATATTCAATCATAAAAG-----------------------------------------------------------------------------ATTCTA-------ACCATTCGT---------------------GCAGA--------------------------------------TTATTTGTTTGCTAATAAACTAGGTGGAGCTTCAAGTACGCTTACCATACCATTAAAC-------TTAATTAATAAGT-ATTAT-----TCCCTTTTATACTTCATTATTTTCAGTGTCTCTACATGCCAACGAGGTGTTTATTATTCGCAGTAAGTAACT---------------------TG-GCC---------------------A--------------------------------------GTCAT----------------------------------------------------------------------------------------------CAAACCAATTACTAACTTTTAACGTCCCT-ACGTTCTT--ATCCATT---ATTCTAA--------------TACGT-TCGCTATTTATTCACAGAACTTCCTTTTGAATGCCCGCGCTGCATTCGATCTTTTGCGGCCAAAAGCSizeHit CountTotal NormTotal
No Reads
droTak1
G--------------------------------------------------------------------------------------TAAATTAATAGAATGAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGCAAGGGTATTTAAGTTTCGGCTGACCGAAGCTA--GCT-----------TCCTTTCTTGTTATG----------------------------------------------AATAATTATTAA---------T---AT---------------TCTATTTTGCTTTCAGTGTCCGTCCATGCCAATGAAGTGTTTATTATACGCAGTAAGTAACTTGATGA--------------------G---------------------AGCTT------------------------------------------------------------------TACTGAGCT-------------TACGTTGTGTCAGTT-------------A-TG-------------------------------------------------------------A--------CAGT--------TATATAT-----------------------------------------------------------------AAASizeHit CountTotal NormTotal
No Reads
droEle1
TATGTGCGCAAAATGTCCGTTTGAGTGCGAATCAGATGCGGACATGCGAAAGCATTTGAATGCCA---ACGGCATCAACGATGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT--------ATTATCTGTTGCTTTCAGTGTCTGTGCATGCCAACGAGGTGTTTATTATACGCAGTAAGTAATATGTTGCAAATCAAACATTC--AC-AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTAATTTCGCCACAGAACTACCCTTCGAGTGCCCACGCTGCATTCGATCGTTTGCGGCTAAGAGCSizeHit CountTotal NormTotal
No Reads
droRho1
CATGTGCGCTAAATGTCCGTTCGAGTGCGAATCGGATGCTGATATGCGGAAGCATTTGAATGCCCACCACGGCATCAATGATGGTGGTAAGTAAAG----------------------T--------------------TGATTTAGACTTTCATTTGTAATAAGTATTCACTTTTGGACAAACAAGTTAAATATAGTTTTAATGCATTTAATAAATTTATTTTTACACTACAAAATATTTTTAAAAAGTATTGTTGTAATAATATTTAAGGGTTTTTATAACGTTTTATTAATAACCAC-------------------------AA------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTCTATTGATTGCAGTGTCAGTGCATGCCAATGAGGTGTTTATTATACGCAGTAAGTGATT---------------------AC-AAAA-TTTTCAGATTGACCTATTTATCGTAATTTTAAACCTATCTAACTA--------------------------------------------------------------------------------------------------------------------------------------------------------AACCATT---AAATTTA--------------CATTT-CCGTTATCTATCCACAGAACTACCCTTCGAGTGCCCACGCTGCATTCGATCGTTTGCGGCTAAGAGCSizeHit CountTotal NormTotal
No Reads
droFic1
GATGTGCGCAAAATGTCCGTTTGAGTGCGAAGCGGATGCGGAAATGAAGAAGCATTTAAATGCCCACCACGGCATCAATGATGGTGGTAAGTTTCA----------------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------G-A-----------------CT--TCAA----------------------------------------------------TCGA--TTT-----------TACGTTGATTTCATC----------------------------------------------AATACTAATTTA---------T---ATATTAC--------ATCTATTTTTCCTTTCAGTGTCCGTGCATGCAAACGAGGTGTTTATTATACGCAGTAAGTAAAC---------------------CTTTTC---------------------A--------------------------------------CTCGC------------------T--------A----------------------ACA-----------CAATTTTGT-AT-T-ATAACT--------------------------------------CATGTCCTG-------T--A--------AAAC--------TAAAACT-TCCTTAAACTTTTTTAGAACTACCTTTTGAGTGCCCGCGCTGCATTCGCTCATTTGCGGCCAAGAGCSizeHit CountTotal NormTotal
No Reads
droKik1
TATGTGCGCCAAATGCCCCTTTGAGTGCGAGGCGGATGGAGAAATGCGAAAGCATCTGAATGCCCATCACGGCATTAACGATGGACGTAAGTCAGG-AAAA-----------------CCATAGTTAAACAAAAGCTTTTGATTAAGGGTT-----------------------------------------------------------------------------------------------------------------------------------------------------TGACTTTATAT-----------------------------TAACTCTCATTAAGGGTTTGACTTTATATTTAAATAGAAAAGAATAAGACAAGTTG---GCAATTTTGAAACTTTTATCATTAATAATCTATTCACTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT----TTGCTCTTAATTACAGTGTCCATACATGCCAACGAGGTCTTCATTATACGCAGTAAGTATCG------------------CAA---G------------------------------------------------------TC---------ATTATAGAAACCTCCTTTCA-------------------------------------------------------AATATAA-AAACCCAC-----------------TAACTCTTTTCCTCTCTCAT-----------------------------------------------GATCTCTAATCACAGAATTGCCTTTCGAGTGCCCGCGCTGTATTCGATCGTTTGCTGCCAAGGCCSizeHit CountTotal NormTotal
No Reads
droAna3
CATGTGTGCAAAGTGTCCGTTCGAGTGTGAGCCGGATGGAGAGATGCGAAAGCACTTGAATGCCCACCACGGCATCAACGATGGGGGTAAATTAAT-AAAA-----------------CTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAT------ATAATAAAATGTA--TA-------------------------AA----------------------------------------------GAATCTTTCTAATTAAAAAAT-ATCAT-----TC--------TTTCCCCCCTCTATAGTATCAGTGCATGCAAACGAAGTGTTTATTATACGCAGTAAGTACAT------------------TTT---G------------------------------------------------------GCATAGCA---------GGT--GCCTTTAACACCCTTGTTGCATGGCTTTGAAACCCATTAAAACCATTA--ACATC-------------T-GCATGGCA-TGGCGTTCAATAAATTA---------------------------------------------------------------------AAATCTATTTCCAGAGCTGCCCTTTGAGTGCCCGCGATGCATTCGCTCGTTTGCGGCCAAGAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CATGTGTGCAAAGTGTCCGTTCGAGTGTGAGCCGGAGGGAGAGATGCGAAAGCATTTAAATGCCCACCACGGCATCAACGATGGAGGTAACAAAAA-AAAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTA---------------------------------------------------------------------------------------------------TAAT--------------------TTA--TA-------------------------AA----------------------------------------------GAATCTTTCTTA---AAAAAT-CGTAT-----TC---------TTTTCCTCTTTTTAGTATCCGTTCATGCAAACGAAGTGTTTATCATACGCAGTAAGTACAT------------------TTT---G------------------------------------------------------GCATTAAA---------GGT--GCCTCTTATACCCTCATTGCATGGCTTTGAATCCCATTAAAACCATTA--ACATC-------------T-GCATGGCA-TGGCATTTAATAAATTA---------------------------------------------------------------------AAATCTATTTCCAGAACTGCCCTTTGAGTGCCCGCGATGCATTCGCTCGTTTGCGGCCAAGAGCSizeHit CountTotal NormTotal
No Reads
dp5
GATGTGTGCCAAGTGTCCGTTTGAGTGCGAATTGGATACGGAAATGCGAAAGCATCTGAATGCGCATCACGGCATCAATGATGGTGGTAAGTGTAG----------------------CCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAAAGG-------------------------------------------------------CAAAGAG---T-----------------------------------------G-C-----------------CT--TCTCCCTT----------------------------------------------------------------------------TCATATG----------------------------------------------AAGCCATTTTAA---------A---AC-----TATATTTTGCACACTATTCGTTACAGTATCCGTGCATGCCAACGAGGTGTTTATTATACGCAGTGAGTAGCG---------------------TT-AAGAA-------ATTAATTAATTTATTTTGAAGGGAGATCTATCTGATCATCTCAGTGCATTA---------GAT--GTCCTTACC-------------------------------------------------------AGTAGGA-GTCCCCAG-----------------------------------------------------A--------TAGC--------TATATAT-TCCTTGTCTATTCCCAGAACTACCCTTTGAGTGTCCGCGATGCATTCGCTCATTTGCGGCCAAGAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................ATCTGAATGCGCATCACGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGCATGCCAACGAGGTGTTTA.............................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..................................................AGCATCTGAATGCGCATCACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................TTGAGTGCGAATTGGATACGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACTACCCTTTGAGTGTCCGCGATGC........................2711.0010100000000
..............GTCCGTTTGAGTGCGAATTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
GATGTGTGCCAAGTGTCCGTTTGAGTGCGAATTGGATACGGAAATGCGAAAGCATCTGAATGCGCATCACGGCATCAATGATGGTGGTAAGTGTAG----------------------CCAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAAAAAGG-------------------------------------------------------CAAAGAG---T-----------------------------------------G-C-----------------CT--TCTCCCTT----------------------------------------------------------------------------TCATAAA----------------------------------------------AAGCCATTTTAA---------A---AC-----TATATTTTGCACACTATTCCTTACAGTATCCGTGCATGCCAACGAGGTGTTTATTATACGCAGTGAGTAGCG---------------------TT-ACGAA-------ATTGATTTATTTATTTTGAAGGGAGATCTATCTGATCAGATCAGTGCATTA---------GAT--GTCCTTACC-------------------------------------------------------AGTAGGA-GTGCCCAG-----------------------------------------------------A--------TAGC--------TATATAT-TCCTTGTCTATTCCCAGAACTACCCTTTGAGTGTCCGCGATGCATTCGCTCATTTGCGGCCAAGAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTTTTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTTTCCGTACATGCCAATGAAGTGTTTATTATACGTAGTAAGTATTT------------------GAT---G------------------------------------------------------AT-----------------------ATT-----------------------------------------A--AT------------AAT--TA-GTGGGCAA-----------------------------------------------------G--------TTGCTAA---TG--TATTT-TGATTTTATCTCTCTAGAATTGCCATTTGAGTGCCCACGTTGTATACGTTCGTTTGCTGCCAAAAGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGTTCGTTTGCTGCC......1811.00110000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATACGTTCGTTTGCTGCCAAAAG.2611.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACGTTCGTTTGCTGCCAAAAG.2311.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTGAGTGCCCACGTTGT........................2011.00100010
droVir3
AATGTGTGCCAAGTGTCCCTTTGAGTGCGAACAGGAGGGTGAAATGCGTAAGCATCTAAATGCACATCATGGCATCAACGATGGTGGTAAGTAAAT----------------------TTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATATACT-------------------------------------------------------CAAATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATATAAA---------AATCAACATTAT---------T---GT------------TCCATTTTAATGCTCACAGTTTCTTTGCATGCCAACGAGGTGTTTATCATACGCAGTAAGTTAAG---------------------C---------------------CATTTAATGTAAT-------CCGT----------------------------------------------------------------------------------------------------------TTGAATAT-----------------------------------------------------T--------TTACTTAACCAATATGTAT--AAACAT-TCTACTTAGAACTGCCCTATGACTGTCCACGCTGCATTCGCTCATTTGCGGCCAAGCGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................TTGAGTGCGAACAGGAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000010000000000000000000000000000000000000000000000000
.......GCCAAGTGTCCCTTTGAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000100000000000000000000000000
...GTGTGCCAAGTGTCCCTTTGAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000001000000000000000000000000000000000000000000000000000
....................................................................ATGGCATCAACGATGGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCTTTGCATGCCAACGAGGTGT................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000010000000000000000000000000000000000000000000000000
.........CAAGTGTCCCTTTGAGTGCGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000001000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCCTATGACTGTCCACG............................2011.001000000000000000000000000000000000001000000000000000000000000000
droMoj3
AATGTGTGCTAAATGTCCATTTGAATGCGAACAGGAGGGTGAAATGCGCAAACATTTAAGTGCGCATCATGGCATTAATGATGGTGGTAAATATAT----------------------TTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAATT-------------------------------------------------------AAAA---CTA---------------------------------------------------------------------------------------------------CATT--------------------T-AAACA-------------------------AA----------------------------------------------CA---------------------------------ATTTTCCACGAAAATATGTACAGGGTCTACGCATGCCAATGAGGTGTTTATCATACGCAGTAAGTAACA---------------------AT-ATT---------------------GTAAT------------------------------------------------------------------AAC--------------------------A--ATATT-------------T-ATAAAACA-TGA---------------------------------------------------A--------TTATTGA---AG--CAATTTCTTTCATCT--GAGTAGAATTGCCTTATGACTGTCCACGCTGTATTCGGTCCTTTGCGGCTAAGCGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---AG--CAATTTCTTTCATCT--GAGTAG..................................................2611.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA---AG--CAATTTCTTTCATCT--GAGTAG..................................................2711.001100000
droGri2
GATGTGCGCGAAGTGTCCCTTTGAATGTGAGCTGGATGTGGATATGCGCAAGCATTTAAATGCCCATCATGGCATCAATGATGGCGGTAAGCTAAT----------------------TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATT-------------------------------------------------------TATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT-TATATA---------TAATAACAT-------------GATCT-----TG---------TTTTTACCTAAACAGTTTCCATTCATGCCAACGAAGTGTTTATCATACGCAGTAAGTTGAA------------------CAT---A------------------------------------------------------AG-----------------------ATT-----------------------------------------C--TT------------AAA--GG-TTTTACTT-----------------------------------------------------G--------TTGCTTAATCGGAAT-CTT-TATAAATTCTCCTCAAGAACTGCCCTATGAGTGTCCACGCTGCATTCGTTCATTTGCGGCAAAGCGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:26 PM