dsi_23308

Name	Class	Family	Strand
G2_DM	LINE	Jockey	-

TCATGTCGACAGTGCCCGCCCAGTGCGGAACTGTTGATACACCGAATGAGGTAGGTATATGCAGATAAATATGCGACCTTTTGGAAGAAGAGGAGTTTCTACTTTTCAAGATACATTTTCTATTTTTTTTTGTGGATTCTCGTGGTACGGCTGTGCGTCAGAGACAATTTTCATTTGGTCTAGATTCGCTGTATTTTTAGACGGTTTGAAACACTTGCCGTGCCCCACAGCTGTATCTCGTAGTTTATTG ************************************************........((((((.......((.((((...((((((..(((((((....)))))))...........(((((........))))).((((...((((....))))....))))...))))))...))))))......))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M024 male body	GSM343915 embryo
.........................................................................CGACCCTTTGGAAGA..................................................................................................................................................................	15	1	4	4.25	17	4	2	5	3	3	0	0
.......................................................................TGCGACCCTTTGGAAGA..................................................................................................................................................................	17	1	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................TTTTTTGTGGATTCTCGTGGTACGGCTG.................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................CGCTGTAATGTTAGACGG..............................................	18	2	2	0.50	1	0	0	0	0	0	1	0
....................................................................................................................................TGGATGCTCGTGGTACGGCCC.................................................................................................	21	3	2	0.50	1	1	0	0	0	0	0	0
.........................................................................CGACCCTTTGGAAGAA.................................................................................................................................................................	16	1	2	0.50	1	1	0	0	0	0	0	0
............................................................................................................................................................GTCAGAGACGACTTTCTTTTG.........................................................................	21	3	3	0.33	1	0	0	0	0	0	0	1
........................................................................TCGACCTTTTGGAAGA..................................................................................................................................................................	16	1	6	0.17	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................AGCTGTATCTAGTAG.......	15	1	6	0.17	1	0	0	1	0	0	0	0
......................................................................................................................................................CTGTACGTCAGATACA....................................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0
......................................................................................................................TTTATTTTTTTTTGTGGA..................................................................................................................	18	1	20	0.05	1	0	0	0	1	0	0	0
.......................................................................TTCGACCCTTTGGAAGA..................................................................................................................................................................	17	2	20	0.05	1	0	1	0	0	0	0	0
.........................................................................GGACCTTTTGGAAGA..................................................................................................................................................................	15	1	20	0.05	1	1	0	0	0	0	0	0

AGTACAGCTGTCACGGGCGGGTCACGCCTTGACAACTATGTGGCTTACTCCATCCATATACGTCTATTTATACGCTGGAAAACCTTCTTCTCCTCAAAGATGAAAAGTTCTATGTAAAAGATAAAAAAAAACACCTAAGAGCACCATGCCGACACGCAGTCTCTGTTAAAAGTAAACCAGATCTAAGCGACATAAAAATCTGCCAAACTTTGTGAACGGCACGGGGTGTCGACATAGAGCATCAAATAAC ************************************************........((((((.......((.((((...((((((..(((((((....)))))))...........(((((........))))).((((...((((....))))....))))...))))))...))))))......))))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
..............................................................................AAAGTCTCCTTCTCCTCAAAGAT.....................................................................................................................................................	23	3	1	2.00	2	2	0	0	0	0	0
........................................................................................TCTCCTCAAAGATGAAAAGTTCTATG........................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0
............................................................................GGAAAACGTTCTTCTTCTCAAT........................................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0
................................................................................AGTCTTCTTCTCCTCAAAGACGA...................................................................................................................................................	23	3	2	1.00	2	2	0	0	0	0	0
...........................................................................AGGAAAACGTTCTTCTTCTCAA.........................................................................................................................................................	22	3	3	0.33	1	1	0	0	0	0	0
....................................................................................................................................................................................................................TGAACGGCACGGGGTGTCGACTTAG.............	25	1	3	0.33	1	0	1	0	0	0	0
................................................ACCATCCATATAGGTCT.........................................................................................................................................................................................	17	2	10	0.10	1	0	0	1	0	0	0
.............................................................................................TCAAAGATGAACAGTTCA...........................................................................................................................................	18	2	13	0.08	1	0	0	0	1	0	0
.............................................................................................................................................................AGTCACTGTTATAAGTAA...........................................................................	18	2	18	0.06	1	0	0	0	0	1	0
.................................................................................................................................................................................................................TTGTGAACGACACGG..........................	15	1	19	0.05	1	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3l:22510760-22511009 +	dsi_23308	TCATGTCGACAGTGCCCGCCCAGTGCGGAACTGTTGATACACCGAATGAGGTAGGTATATGCAGATAAATATGCGACCTTTTGGAAGAAGAGGA----------GTTTCTACTTTTCAAGATACATTTTCTATTTTTTT-TT------GTGGATTCTCGTGGTACGGCTGTGCGTCAGAGACAATTTTCA----TTTGGTCTAGATTCGCTGTATTTTTAGACGGTTTGAAACACTTGCCGTGCCCCACAGCTGTATCTCGTAGTTT-------------------ATTG
droSec2	scaffold_41:49666-49916 +		TCATGTCGACAGTGCCCGCCCAGTGCGGTATTGTTGATACACCGAATGAGGTAGGTATATGCAGATAAATATGCGACCTTTTGGAAGAAGAGGA----------GTTTCTACTTTTCAAGATACATTTTCTATTTTTTTTTT------GTGGATTCTCGTGGTACGGCTGTGCGTCAGAGACAATTTTCA----TTTGGTCTAGATTCGCTGTATTTTTATACGGTTTAAAACACTTGCCGTGCCCCACAGCTGTATCTCGTAGTTT-------------------ATTG
dm3	chr3L:23025252-23025511 +		TCATGTCGACAGTGCCAGCCCAGAGTGATTCTGTTGAGACACCGAACGAGGTAGGTATATGCAGATAAATATACAACCTTTTAAAAGAAGAGAAGTAGATAGTAGTTCCTACTTTTTGATATACACTTTCTATTTTTTT-CC------TTGCATTCTCGTCGTACGGGTGTGCGTCAGAGACAATGCTCA----TTTGTTCTAGAATCGCTGTATTTTTAGACGGTTTGAAGTACTTGCCGTGCCACACAGGTGTATCCCGTAGTTTTT-------------------GG
droEre2	scaffold_4784:25671120-25671257 -		--------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTCGTGGTAAGGGTGTACGTCAGTGACAATTCTCAGGCATTTGTTCTGGAACTGCTGTATGTTTAGGTGGTTTGAAACATTTGCCGTACCCCACAGCTGTATCCCGTAGGTCCAGATCCTTGTATACCAGGATTT
droYak3	chr2h:483573-483735 +		TC-----------------------------------------------------------------------------------------------------------TGCTACCCACGGTA---TTCCTAGCTCCTT-ATGGATTGTCGAGTTCTCGTGGTATGGGTGAGCGTCAGAGATTAGGCTCAGGCACTTGTTTTGAAAGCGTTGTATGCGGATTCGGTTAGAGACGCTTGCAGTGCCCCACAACTGAATCCCATAAGTCCAAATT----------------G
droEug1	scf7180000408823:20087-20219 -		T---------------------------------------------------------------------------------------------------------------------------------------------------------TATCGTGAAAAGGGTGTGCTCCAGAAATTGCCCTTAGCGCTTTATTTTGTGTTGTCTCAATTTTCCTTATGTTTGTTGCGCTTGCTGTGCCCCACAGCTGAATACCGTAGGTCCAGATTGG-CT---TCACGATGG
droTak1	scf7180000412682:4567-4623 -		C-AGACTGACAGCACAACTGAAGTGCAGTAATGTTCAAACACCGAACAAGGTTTGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491327:5070-5187 +		T------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGGAACGGGTGGGCACCCGAGACCATCCGCAGAGCCTTGTTCTGATGCCTTTGGATTGACTTACGGTTTGTCGTACTGGCAGTACCCCACAACTGGATGCCGTAAGTCCAGATT----------------G
droFic1	scf7180000449027:4232-4347 +		--------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGTATATGTGAGCGCCCGAGACCATTCTAAGTGCTTTGTTTTGAAGCCGCTGGATGCTTCTGCGGTTTGAAAACGATGCAGTACCCCACAGTTGGATACCGTAGGTCCATATC----------------G
droAna3	scaffold_13693:68992-69117 +		G-------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTCATGATAGGCATGGGCCCCAGTGGCGATTCGAATGGCTCTATTT-CAAATGTTTGAATTCTTCGGACATTCGTCTTGCTTGCGGTGCCCCAGAGCTGTATTCCGTACGTCCAGATTGG-G-----------CG
droBip1	scf7180000396363:18523-18657 +		G-------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTCATGATAGACGTGGGCCCCAGAGGCGATTCGAAGGGCTCTATTTTCGAAAGCTTGCATAGTTCGGACATTCGTCTTGCTCGCAGTGCTCCAGAGCTGTATGCCGTACGTCCAGATTGG-GT---GTATTATTG
droWil2	scf2_1100000004887:328722-328812 +		T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTGGAATCGTTGGAGGATTTCAACATTTGAGTCGGACGCCGTGCCCCAGAGTTGAATCCCATAGGTCCATACAGG-TT---TTAGTATGG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TCATGTCGACAGTGCCCGCCCAGTGCGGAACTGTTGATACACCGAATGAGGTAGGTATATGCAGATAAATATGCGACCTTTTGGAAGAAGAGGA----------GTTTCTACTTTTCAAGATACATTTTCTATTTTTTT-TT------GTGGATTCTCGTGGTACGGCTGTGCGTCAGAGACAATTTTCA----TTTGGTCTAGATTCGCTGTATTTTTAGACGGTTTGAAACACTTGCCGTGCCCCACAGCTGTATCTCGTAGTTT-------------------ATTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................TTTT-TT------GTGGATTCTCGTGGTACGGCTG........................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

TCATGTCGACAGTGCCCGCCCAGTGCGGTATTGTTGATACACCGAATGAGGTAGGTATATGCAGATAAATATGCGACCTTTTGGAAGAAGAGGA----------GTTTCTACTTTTCAAGATACATTTTCTATTTTTTTTTT------GTGGATTCTCGTGGTACGGCTGTGCGTCAGAGACAATTTTCA----TTTGGTCTAGATTCGCTGTATTTTTATACGGTTTAAAACACTTGCCGTGCCCCACAGCTGTATCTCGTAGTTT-------------------ATTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

TCATGTCGACAGTGCCAGCCCAGAGTGATTCTGTTGAGACACCGAACGAGGTAGGTATATGCAGATAAATATACAACCTTTTAAAAGAAGAGAAGTAGATAGTAGTTCCTACTTTTTGATATACACTTTCTATTTTTTT-CC------TTGCATTCTCGTCGTACGGGTGTGCGTCAGAGACAATGCTCA----TTTGTTCTAGAATCGCTGTATTTTTAGACGGTTTGAAGTACTTGCCGTGCCACACAGGTGTATCCCGTAGTTTTT-------------------GG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................TGCGTCAGAGACAATGCTCA----TTTGTT..........................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CACCGAACGAGGTAGGTATATG.....................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CTAGAATCGCTGTATTTTTAGACGGT................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................................TGTGCGTCAGAGACAATGCTCA----TTTGT...........................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
TCATGTCGACAGTGCCAGC...............................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CCCAGAGTGATTCTGTTGAGACACCGAAC...................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCTAGAATCGCTGTATTTTTAGACGG.................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................ACCGAACGAGGTAGGTATATGCAGATAA..............................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

--------------------------------------------------------------------------------------------------------------------------------------------------------ATTCTCGTGGTAAGGGTGTACGTCAGTGACAATTCTCAGGCATTTGTTCTGGAACTGCTGTATGTTTAGGTGGTTTGAAACATTTGCCGTACCCCACAGCTGTATCCCGTAGGTCCAGATCCTTGTATACCAGGATTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

TC-----------------------------------------------------------------------------------------------------------TGCTACCCACGGTA---TTCCTAGCTCCTT-ATGGATTGTCGAGTTCTCGTGGTATGGGTGAGCGTCAGAGATTAGGCTCAGGCACTTGTTTTGAAAGCGTTGTATGCGGATTCGGTTAGAGACGCTTGCAGTGCCCCACAACTGAATCCCATAAGTCCAAATT----------------G	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................TT-ATGGATTGTCGAGTTCTCGTGGTA..............................................................................................................................	26	20	26.90	538	3	0	43	0	0	0	24	0	0	0	468
.............................................................................................................................................TGGATTGTCGAGTTCTCGTGGTAT.............................................................................................................................	24	20	24.10	482	0	0	5	0	0	0	0	0	0	0	477
..................................................................................................................................................................................................................TGTATGCGGATTCGGTTAGAGACGC.......................................................	25	20	12.50	250	0	231	0	3	0	0	2	0	0	1	13
..................................................................................................................................................................................................................TGTATGCGGATTCGGTTAGAGACG........................................................	24	20	8.20	164	1	90	3	10	0	0	60	0	0	0	0
.............................................................................................................................................TGGATTGTCGAGTTCTCGTGGTA..............................................................................................................................	23	20	7.25	145	0	121	24	0	0	0	0	0	0	0	0
.............................................................................................................................................TGGATTGTCGAGTTCTCGTGGTATG............................................................................................................................	25	20	6.80	136	0	129	6	0	0	0	1	0	0	0	0
.........................................................................................................................................TT-ATGGATTGTCGAGTTCTCGTGGT...............................................................................................................................	25	20	6.65	133	0	43	0	3	0	0	16	0	0	0	71
............................................................................................................................................................................................................................TTCGGTTAGAGACGCTTGCAGTGCCC............................................	26	20	5.00	100	0	14	21	0	0	0	0	0	0	0	65
...............................................................................................................................TCCTAGCTCCTT-ATGGATTGTCGAG.........................................................................................................................................	25	20	4.55	91	0	42	4	9	0	0	2	0	0	0	34
..............................................................................................................................TTCCTAGCTCCTT-ATGGATTGTCGAG.........................................................................................................................................	26	20	3.70	74	0	69	0	0	0	0	5	0	0	0	0
.........................................................................................................................................TT-ATGGATTGTCGAGTTCTCGTGGTAT.............................................................................................................................	27	20	3.40	68	0	0	0	0	0	0	0	0	0	0	68
.........................................................................................................................................................................................................TGAAAGCGTTGTATGCGGATTCGGT................................................................	25	14	3.36	47	0	5	5	1	0	0	2	0	0	0	34
.............................................................................................................................................TGGATTGTCGAGTTCTCGTGGTATGG...........................................................................................................................	26	20	3.30	66	0	41	0	2	0	0	5	0	0	0	18
.........................................................................................................................................................TTCTCGTGGTATGGGTGAGCGTCAGA...............................................................................................................	26	20	3.05	61	0	23	4	1	0	0	0	0	0	0	33
..........................................................................................................................................T-ATGGATTGTCGAGTTCTCGTGGTA..............................................................................................................................	25	20	3.00	60	0	58	0	0	0	0	2	0	0	0	0
........................................................................................................................................................................TGAGCGTCAGAGATTAGGCTCAGGCACT..............................................................................................	28	1	3.00	3	0	0	1	0	0	0	0	0	0	0	2
...............................................................................................................................TCCTAGCTCCTT-ATGGATTGTCGAGT........................................................................................................................................	26	20	3.00	60	0	0	6	0	0	0	0	0	0	0	54
..................................................................................................................................................................................................................................TAGAGACGCTTGCAGTGCCCCACAAC......................................	26	20	2.85	57	0	24	14	0	0	0	3	0	0	0	16
............................................................................................................................................ATGGATTGTCGAGTTCTCGTGGTAT.............................................................................................................................	25	20	2.75	55	0	0	0	0	0	0	0	0	0	0	55
............................................................................................................................................................................................................................................TGCAGTGCCCCACAACTGAATCCCA.............................	25	20	2.75	55	0	55	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TT-ATGGATTGTCGAGTTCTCGTGG................................................................................................................................	24	20	1.95	39	0	0	23	0	0	1	15	0	0	0	0
..................................................................................................................................................................................................................TGTATGCGGATTCGGTTAGAGACGCT......................................................	26	20	1.85	37	0	0	17	0	0	0	3	0	0	1	16
.........................................................................................................................TA---TTCCTAGCTCCTT-ATGGATTGTCGAG.........................................................................................................................................	28	20	1.80	36	0	32	1	1	0	0	2	0	0	0	0
..................................................................................................................................................................................................................TGTATGCGGATTCGGTTAGAGAC.........................................................	23	20	1.35	27	1	5	5	0	1	0	15	0	0	0	0
............................................................................................................................................................................................................................................TGCAGTGCCCCACAACTGAATCCCAT............................	26	20	1.30	26	0	4	0	0	0	0	0	0	0	0	22
.............................................................................................................TGCTACCCACGGTA---TTCCTAGCTCC.........................................................................................................................................................	25	20	1.30	26	0	6	0	0	0	0	0	0	0	0	20
..........................................................................................................................................T-ATGGATTGTCGAGTTCTCGTGGTATG............................................................................................................................	27	20	1.25	25	0	3	0	0	0	0	0	0	0	0	22
..................................................................................................................................................TGTCGAGTTCTCGTGGTATGGGTG........................................................................................................................	24	20	1.20	24	0	20	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GTATGCGGATTCGGTTAGAGACGC.......................................................	24	20	1.15	23	0	23	0	0	0	0	0	0	0	0	0
.............................................................................................................TGCTACCCACGGTA---TTCCTAGCTCCT........................................................................................................................................................	26	20	1.15	23	0	21	0	0	0	0	0	0	0	0	2
...................................................................................................................................................................................................TTGTTTTGAAAGCGTTGTATGCGGA......................................................................	25	15	1.13	17	0	3	0	0	0	0	0	0	0	0	14
.........................................................................................................................TA---TTCCTAGCTCCTT-ATGGATTGTC............................................................................................................................................	25	20	1.10	22	0	18	4	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TCAGAGATTAGGCTCAGGCACTTGTT..........................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................CACGGTA---TTCCTAGCTCCTT-ATGGAT................................................................................................................................................	26	20	0.95	19	0	19	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GGATTGTCGAGTTCTCGTGGTATG............................................................................................................................	24	20	0.95	19	0	16	3	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TGCAGTGCCCCACAACTGAATCCC..............................	24	20	0.90	18	0	13	5	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TGCCCCACAACTGAATCCCATAAGTCC......................	27	20	0.90	18	0	18	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCGGTTAGAGACGCTTGCAGTGCCCC...........................................	27	20	0.90	18	0	0	17	0	0	0	0	0	0	0	1
.........................................................................................................................................TT-ATGGATTGTCGAGTTCTCGTGGC...............................................................................................................................	25	20	0.80	16	0	0	16	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGTTTTGAAAGCGTTGTATGCGGAT.....................................................................	25	15	0.80	12	0	7	3	0	0	0	2	0	0	0	0
.................................................................................................................................................................................................................TTGTATGCGGATTCGGTTAGAGACGC.......................................................	26	14	0.71	10	0	10	0	0	0	0	0	0	0	0	0
...............................................................................................................................................GATTGTCGAGTTCTCGTGGTATGGG..........................................................................................................................	25	20	0.70	14	0	12	0	2	0	0	0	0	0	0	0
..................................................................................................................................TAGCTCCTT-ATGGATTGTCGAGTTCTC....................................................................................................................................	27	20	0.70	14	0	0	0	0	0	0	0	0	0	0	14
..............................................................................................................................TTCCTAGCTCCTT-ATGGATTGTCGAGT........................................................................................................................................	27	20	0.70	14	0	0	0	0	0	0	0	0	0	0	14
................................................................................................................TACCCACGGTA---TTCCTAGCTCCTT-A.....................................................................................................................................................	25	20	0.70	14	0	14	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCGGTTAGAGACGCTTGCAGTGCCCC...........................................	26	20	0.65	13	0	7	6	0	0	0	0	0	0	0	0
..............................................................................................................................................GGATTGTCGAGTTCTCGTGGTATGGG..........................................................................................................................	26	20	0.65	13	0	13	0	0	0	0	0	0	0	0	0
TC-----------------------------------------------------------------------------------------------------------TGCTACCCACGGTA---TTCCTAGCTCCT........................................................................................................................................................	28	20	0.65	13	0	13	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TGGATTGTCGAGTTCTCGTGGT...............................................................................................................................	22	20	0.65	13	0	9	4	0	0	0	0	0	0	0	0
............................................................................................................................................ATGGATTGTCGAGTTCT.....................................................................................................................................	17	20	0.60	12	0	0	0	0	0	0	0	0	0	0	12
.........................................................................................................................................TT-ATGGATTGTCGAGTTCTCGTG.................................................................................................................................	23	20	0.60	12	0	0	2	0	0	0	6	0	0	0	4
.................................................................................................................................................................................................................................................TGCCCCACAACTGAATCCCATAAGTC.......................	26	20	0.55	11	0	10	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................GCAGTGCCCCACAACTGAATCCCA.............................	24	20	0.55	11	0	11	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCGGTTAGAGACGCTTGCAGTGCCC............................................	25	20	0.50	10	0	5	5	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TGCAGTGCCCCACAACTGAATCCCATAAGTC.......................	31	20	0.50	10	0	0	0	0	0	0	0	0	0	0	10
................................................................................................................TACCCACGGTA---TTCCTAGCTCCTT-ATG...................................................................................................................................................	27	20	0.50	10	0	10	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGAAAGCGTTGTATGCGGATTCGGTT...............................................................	26	14	0.50	7	0	2	5	0	0	0	0	0	0	0	0
.................................................................................................................................................TTGTCGAGTTCTCGTGGTATGGGTG........................................................................................................................	25	20	0.50	10	0	10	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TGTCGAGTTCTCGTGGTATGGGTGA.......................................................................................................................	25	20	0.45	9	0	7	1	0	0	0	1	0	0	0	0
............................................................................................................................................................TCGTGGTATGGGTGAGCGTCAGAGAT............................................................................................................	26	20	0.45	9	0	8	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGAAAGCGTTGTATGCGGATTCGG.................................................................	24	14	0.43	6	0	4	0	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................TGCAGTGCCCCACAACTGAATCCCATA...........................	27	20	0.40	8	0	7	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GTATGCGGATTCGGTTAGAGACGCT......................................................	25	20	0.40	8	0	8	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGTTTTGAAAGCGTTGTATGCGGA......................................................................	24	15	0.40	6	0	4	2	0	0	0	0	0	0	0	0
..................................................................................................................................................TGTCGAGTTCTCGTGGTATGGGT.........................................................................................................................	23	20	0.40	8	0	6	0	0	0	0	2	0	0	0	0
..................................................................................................................................................TGTCGAGTTCTCGTGGTATGGGTGAGC.....................................................................................................................	27	20	0.40	8	0	8	0	0	0	0	0	0	0	0	0
............................................................................................................................................ATGGATTGTCGAGTTCTCGTGGTA..............................................................................................................................	24	20	0.40	8	0	8	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TGGATTGTCGAGTTCTCGTGGTATGGG..........................................................................................................................	27	20	0.40	8	0	0	1	0	1	0	6	0	0	0	0
......................................................................................................................................................................................................................TGCGGATTCGGTTAGAGACGCTTGCAGT................................................	28	20	0.40	8	0	0	0	0	0	0	0	0	0	0	8
..............................................................................................................................................GGATTGTCGAGTTCTCGTGGTAT.............................................................................................................................	23	20	0.40	8	0	8	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TAGAGACGCTTGCAGTGCCCCACAACT.....................................	27	20	0.40	8	0	5	2	0	0	0	1	0	0	0	0
....................................................................................................................................................TCGAGTTCTCGTGGTATGGGTGAGC.....................................................................................................................	25	20	0.40	8	0	3	2	3	0	0	0	0	0	0	0
.............................................................................................................................................TGGATTGTCGAGTTCTCGTGG................................................................................................................................	21	20	0.40	8	0	8	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGAAAGCGTTGTATGCGGATTCGGC................................................................	25	14	0.36	5	0	0	5	0	0	0	0	0	0	0	0
..................................................................................................................................TAGCTCCTT-ATGGATTGTCGAGTTC......................................................................................................................................	25	20	0.35	7	0	4	3	0	0	0	0	0	0	0	0
..................................................................................................................................................TGTCGAGTTCTCGTGGTATGGGTGAG......................................................................................................................	26	20	0.35	7	0	7	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TCTCGTGGTATGGGTGAGCGTCAGA...............................................................................................................	25	20	0.35	7	0	5	0	1	0	0	0	0	0	0	1
....................................................................................................................CACGGTA---TTCCTAGCTCCTT-ATGGATTG..............................................................................................................................................	28	20	0.35	7	0	3	4	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTAGAGACGCTTGCAGTGCCCCACAAC......................................	27	20	0.35	7	0	2	0	0	0	0	0	0	0	0	5
...................................................................................................................................................................................................TTGTTTTGAAAGCGTTGTATGCGGAT.....................................................................	26	15	0.33	5	0	2	3	0	0	0	0	0	0	0	0
......................................................................................................................CGGTA---TTCCTAGCTCCTT-ATGGAT................................................................................................................................................	24	20	0.30	6	0	4	2	0	0	0	0	0	0	0	0
...............................................................................................................................................GATTGTCGAGTTCTCGTGGTATGGGT.........................................................................................................................	26	20	0.30	6	0	3	0	3	0	0	0	0	0	0	0
.......................................................................................................................................CCTT-ATGGATTGTCGAGTTCTCGTGG................................................................................................................................	26	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
..........................................................................................................................................T-ATGGATTGTCGAGTTCTCGTGGTATGGA..........................................................................................................................	29	20	0.30	6	0	0	0	0	0	0	0	0	0	0	6
.........................................................................................................................................TT-ATGGATTGTCGAGTTCTCGTGGTAA.............................................................................................................................	27	20	0.30	6	0	1	0	0	0	0	0	0	0	0	5
....................................................................................................................................................TCGAGTTCTCGTGGTATGGGTGAGCG....................................................................................................................	26	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCGGTTAGAGACGCTTGCAGTGCCCCA..........................................	28	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GTATGCGGATTCGGTTAGAGACG........................................................	23	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TCGTGGTATGGGTGAGCGTCAGAGATT...........................................................................................................	27	20	0.30	6	0	5	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TGCAGTGCCCCACAACTGAATCC...............................	23	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TTGTCGAGTTCTCGTGGTATGGGT.........................................................................................................................	24	20	0.30	6	0	0	0	4	0	0	2	0	0	0	0
..................................................................................................................................................................................................................TGTATGCGGATTCGGTTAGAGACGCC......................................................	26	20	0.30	6	0	0	6	0	0	0	0	0	0	0	0
...............................................................................................................................TCCTAGCTCCTT-ATGGATTGTCGAGTTC......................................................................................................................................	28	20	0.30	6	0	6	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TGTATGCGGATTCGGTTAGAGACGCTT.....................................................	27	20	0.25	5	0	4	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TGTATGCGGATTCGGTTAGAG...........................................................	21	20	0.25	5	0	2	0	0	0	0	2	0	0	0	1
.........................................................................................................................................................TTCTCGTGGTATGGGTGAGCGTCA.................................................................................................................	24	20	0.25	5	0	3	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TAGAGACGCTTGCAGTGCCCCACAA.......................................	25	20	0.25	5	0	1	4	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TGCCCCACAACTGAATCCCATAAGTCCA.....................	28	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
...................................................................................................................................................GTCGAGTTCTCGTGGTA..............................................................................................................................	17	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5
..........................................................................................................................A---TTCCTAGCTCCTT-ATGGATTGTCGAG.........................................................................................................................................	27	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TGTATGCGGATTCGGTTAGAGA..........................................................	22	20	0.25	5	0	2	0	0	0	0	3	0	0	0	0
....................................................................................................................CACGGTA---TTCCTAGCTCCTT-ATGGAC................................................................................................................................................	26	20	0.25	5	0	0	5	0	0	0	0	0	0	0	0
.............................................................................................................TGCTACCCACGGTA---TTCCTAGCTCCTT-A.....................................................................................................................................................	28	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
...................................................................................................................................................GTCGAGTTCTCGTGGTATGGGTGAGC.....................................................................................................................	26	20	0.25	5	0	3	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TGTATGCGGATTCGGTTAGA............................................................	20	20	0.25	5	0	2	0	0	0	0	3	0	0	0	0
................................................................................................................................CCTAGCTCCTT-ATGGATTGTCGAGT........................................................................................................................................	25	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GGATTGTCGAGTTCTCGTGGTATGG...........................................................................................................................	25	20	0.25	5	0	5	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGTTTTGAAAGCGTTGTATGCGGATT....................................................................	26	14	0.21	3	0	2	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................CGCTTGCAGTGCCCCACAACTGAATC................................	26	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4
.............................................................................................................................................TGGATTGTCGAGTTCTCGTGGTATGGT..........................................................................................................................	27	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4
....................................................................................................................................................................................................TGTTTTGAAAGCGTTGTATGCGG.......................................................................	23	15	0.20	3	0	3	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TTGTCGAGTTCTCGTGGTATGGG..........................................................................................................................	23	20	0.20	4	0	2	0	1	0	1	0	0	0	0	0
..........................................................................................................................................................TCTCGTGGTATGGGTGAGCGTCAG................................................................................................................	24	20	0.20	4	0	3	0	1	0	0	0	0	0	0	0
.C-----------------------------------------------------------------------------------------------------------TGCTACCCACGGTA---TTCCTAGCTCCT........................................................................................................................................................	27	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
.........................................................................................................................TA---TTCCTAGCTCCTT-ATGGATTGTCG...........................................................................................................................................	26	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TCGTGGTATGGGTGAGCGTCAGAGA.............................................................................................................	25	20	0.20	4	0	1	3	0	0	0	0	0	0	0	0
..............................................................................................................................TTCCTAGCTCCTT-ATGGATTGTCGAGTT.......................................................................................................................................	28	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
................................................................................................................................CCTAGCTCCTT-ATGGATTGTCGAG.........................................................................................................................................	24	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TTCTCGTGGTATGGGTGAGCGTCAGAG..............................................................................................................	27	20	0.20	4	0	3	1	0	0	0	0	0	0	0	0
........................................................................................................................................CTT-ATGGATTGTCGAGTTCTCGTGGTA..............................................................................................................................	27	20	0.20	4	0	3	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................TCGGTTAGAGACGCTTGCAGTGCC.............................................	24	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................CACAACTGAATCCCATAAGTCCAAAT..................	26	20	0.20	4	0	4	0	0	0	0	0	0	0	0	0
.........................................................................................................................................TT-ATGGATTGTCGAGTTCTCGT..................................................................................................................................	22	20	0.20	4	0	0	2	0	0	0	2	0	0	0	0
.................................................................................................................................................................................................................TTGTATGCGGATTCGGTTAGAGACGCT......................................................	27	13	0.15	2	0	1	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTGCAGTGCCCCACAACTGAATCCCA.............................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TTGTCGAGTTCTCGTGGTATGGGC.........................................................................................................................	24	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0
......................................................................................................................CGGTA---TTCCTAGCTCCTT-ATGGATTGTC............................................................................................................................................	28	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TGTATGCGGATTCGGTTAG.............................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
.............................................................................................................................................TGGATTGTCGAGTTCTCGTG.................................................................................................................................	20	20	0.15	3	0	1	0	0	0	0	2	0	0	0	0
.....................................................................................................................ACGGTA---TTCCTAGCTCCTT-ATGGAT................................................................................................................................................	25	20	0.15	3	0	1	2	0	0	0	0	0	0	0	0
...............................................................................................................................................GATTGTCGAGTTCTCGTGGTATGGGTG........................................................................................................................	27	20	0.15	3	0	2	0	0	0	0	1	0	0	0	0
................................................................................................................TACCCACGGTA---TTCCTAGCTCCTT-ATGG..................................................................................................................................................	28	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TCTCGTGGTATGGGTGAGCGTCAGAG..............................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................TTCTCGTGGTATGGGTGAGCGTCAGAA..............................................................................................................	27	20	0.15	3	0	0	1	0	0	0	0	0	0	0	2
.........................................................................................................................................TT-ATGGATTGTCGAGTTCTCG...................................................................................................................................	21	20	0.15	3	0	1	2	0	0	0	0	0	0	0	0
....................................................................................................................CACGGTA---TTCCTAGCTCCTT-ATGGA.................................................................................................................................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................TGCGGATTCGGTTAGAGACGCTTGCAG.................................................	27	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.......................................................................................................................GGTA---TTCCTAGCTCCTT-ATGGATTG..............................................................................................................................................	25	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................................TAGCTCCTT-ATGGATTGTCGAGTTCTCG...................................................................................................................................	28	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CAGTGCCCCACAACTGAATCCCATAAG.........................	27	20	0.15	3	0	2	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TAGAGACGCTTGCAGTGCCCCA..........................................	22	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
......................................................................................................................................TCCTT-ATGGATTGTCGAGTTCTCGTG.................................................................................................................................	26	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TATGCGGATTCGGTTAGAGACGC.......................................................	23	20	0.15	3	0	3	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AGCGTTGTATGCGGATTCGGTTAGA............................................................	25	14	0.14	2	0	1	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTTGAAAGCGTTGTATGCGGATTCGG.................................................................	26	14	0.14	2	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................AAAGCGTTGTATGCGGATTCGGTTAG.............................................................	26	14	0.14	2	0	1	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AAGCGTTGTATGCGGATTCGGTTAGAG...........................................................	27	14	0.14	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GAAAGCGTTGTATGCGGATTCGG.................................................................	23	14	0.14	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGTTTTGAAAGCGTTGTATGCG........................................................................	22	15	0.13	2	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................TTGTTTTGAAAGCGTTGTATGCGGAC.....................................................................	26	15	0.13	2	0	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CACTTGTTTTGAAAGCGTTGTATG..........................................................................	24	16	0.13	2	0	0	0	2	0	0	0	0	0	0	0
.........................................................................................................................TA---TTCCTAGCTCCTT-ATGGATTGTCGA..........................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
..................................................................................................................................................................................................................................TAGAGACGCTTGCAGTGCCCCACA........................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
TC-----------------------------------------------------------------------------------------------------------TGCTACCCACGGTA---TTCCTAGC............................................................................................................................................................	24	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................AGTGCCCCACAACTGAATCCCATAAGTC.......................	28	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................TCGAGTTCTCGTGGTATGGGTGAG......................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TCGTGGTATGGGTGAGCGTCAGAG..............................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TATGCGGATTCGGTTAGAGACGCTTG....................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CGGATTCGGTTAGAGACGCTTGCAG.................................................	25	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................CGGTA---TTCCTAGCTCCTT-ATGGATTGT.............................................................................................................................................	27	20	0.10	2	0	1	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................CAGGCACTTGTTTTGAAAGCGTTGTA............................................................................	26	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TCCTAGCTCCTT-ATGGATTGTCGA..........................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................CGGTA---TTCCTAGCTCCTT-ATGGATTG..............................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CCTT-ATGGATTGTCGAGTTCTCG...................................................................................................................................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CAGGCACTTGTTTTGAAAGCGT................................................................................	22	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................CACAACTGAATCCCATAAGTCCAAATT----------------.	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTAGAGACGCTTGCAGTGCCCCACAA.......................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................TGCCCCACAACTGAATCCCATAAGTCCAA....................	29	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
TC-----------------------------------------------------------------------------------------------------------TGCTACCCACGGTA---TTCCTAGCTC..........................................................................................................................................................	26	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GTATGCGGATTCGGTTAGAGACGCTT.....................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TGCAGTGCCCCACAACTGAATCCCT.............................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................TGGATTGTCGAGTTCTCGTGGTAG.............................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2
................................................................................................................TACCCACGGTA---TTCCTAGCTCC.........................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................ATTCGGTTAGAGACGCTTGCAGTGCCC............................................	27	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................TTCTCGTGGTATGGGTGAGCG....................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................TTCCTAGCTCCTT-ATGGATTGTCG...........................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTCGGTTAGAGACGCTTGCAGTGC..............................................	24	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CTCAGGCACTTGTTTTGAAAGCGTTG..............................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TGGATTGTCGAGTTCTCGTGGTATGGGT.........................................................................................................................	28	20	0.10	2	0	0	1	0	0	0	1	0	0	0	0
................................................................................................................................................ATTGTCGAGTTCTCGTGGTATGGGT.........................................................................................................................	25	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0
.........................................................................................................................................TT-ATGGATTGTCGAGTTCTCGTGGG...............................................................................................................................	25	20	0.10	2	0	1	1	0	0	0	0	0	0	0	0
.......................................................................................................................GGTA---TTCCTAGCTCCTT-ATGGATTGTC............................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................CAGTGCCCCACAACTGAATCCCA.............................	23	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................................CCTAGCTCCTT-ATGGATTGTCGAGTT.......................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCAGGCACTTGTTTTGAAAGCGT................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GAGTTCTCGTGGTATGGGTGAG......................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CTCAGGCACTTGTTTTGAAAGCGTT...............................................................................	25	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................CGGTA---TTCCTAGCTCCTT-ATGGATT...............................................................................................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................TCGAGTTCTCGTGGTATGGGT.........................................................................................................................	21	20	0.10	2	0	0	0	1	0	0	1	0	0	0	0
..........................................................................................................................................T-ATGGATTGTCGAGTTCTCGTGGT...............................................................................................................................	24	20	0.10	2	0	0	0	1	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................TGCAGTGCCCCACAACTGAATCCCATT...........................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................GACGCTTGCAGTGCCCCACAACTGAAT.................................	27	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CAGGCACTTGTTTTGAAAGC..................................................................................	20	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................ACCCACGGTA---TTCCTAGCTCCTT-A.....................................................................................................................................................	24	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CGTTGTATGCGGATTCGGTTAGAGAA.........................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AGCGTTGTATGCGGATTCGGTTA..............................................................	23	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTTTGAAAGCGTTGTATGCGGATTCGG.................................................................	27	14	0.07	1	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TTGTATGCGGATTCGGTTAGAGAC.........................................................	24	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TTGTATGCGGATTCGGTTAGAGA..........................................................	23	14	0.07	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................TGTTTTGAAAGCGTTGTATGCGGATTC...................................................................	27	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TTGAAAGCGTTGTATGCGGATTCGGT................................................................	26	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GAAAGCGTTGTATGCGGATTCGGT................................................................	24	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TTTTGAAAGCGTTGTATGCGGATTC...................................................................	25	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGAAAGCGTTGTATGCGGATTCG..................................................................	23	14	0.07	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................GCGTTGTATGCGGATTCGGTTAGAGA..........................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTTGAAAGCGTTGTATGCGGATTCGGTT...............................................................	28	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGAAAGCGTTGTATGCGGATTC...................................................................	22	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AGCGTTGTATGCGGATTCGGTTAGAGA..........................................................	27	14	0.07	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TTGTTTTGAAAGCGTTGTATGCGG.......................................................................	24	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TGAAAGCGTTGTATGCGGAC.....................................................................	20	15	0.07	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................GGCACTTGTTTTGAAAGCGTTGTATGC.........................................................................	27	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

T---------------------------------------------------------------------------------------------------------------------------------------------------------TATCGTGAAAAGGGTGTGCTCCAGAAATTGCCCTTAGCGCTTTATTTTGTGTTGTCTCAATTTTCCTTATGTTTGTTGCGCTTGCTGTGCCCCACAGCTGAATACCGTAGGTCCAGATTGG-CT---TCACGATGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C-AGACTGACAGCACAACTGAAGTGCAGTAATGTTCAAACACCGAACAAGGTTTGTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGGAACGGGTGGGCACCCGAGACCATCCGCAGAGCCTTGTTCTGATGCCTTTGGATTGACTTACGGTTTGTCGTACTGGCAGTACCCCACAACTGGATGCCGTAAGTCCAGATT----------------G	Size	Hit Count	Total Norm	Total
No Reads

droFic1

--------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGTATATGTGAGCGCCCGAGACCATTCTAAGTGCTTTGTTTTGAAGCCGCTGGATGCTTCTGCGGTTTGAAAACGATGCAGTACCCCACAGTTGGATACCGTAGGTCCATATC----------------G	Size	Hit Count	Total Norm	Total
No Reads

droAna3

G-------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTCATGATAGGCATGGGCCCCAGTGGCGATTCGAATGGCTCTATTT-CAAATGTTTGAATTCTTCGGACATTCGTCTTGCTTGCGGTGCCCCAGAGCTGTATTCCGTACGTCCAGATTGG-G-----------CG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................TGAATTCTTCGGACATTCGTCTTGC.......................................................	25	20	66.85	1337	631	555	0	10	133	8
..................................................................................................................................................................................................................TGAATTCTTCGGACATTCGTCTTGCT......................................................	26	20	40.30	806	411	394	0	1	0	0
............................................................................................................................................................................................................................................................TGTATTCCGTACGTCCAGATTGG-G-----------C.	25	20	15.70	314	45	269	0	0	0	0
....................................................................................................................................................................................................................................GTCTTGCTTGCGGTGCCCCAGAGCTG....................................	26	20	10.10	202	156	35	11	0	0	0
.................................................................................................................................................................................................................................................TGCCCCAGAGCTGTATTCCGTACGTC.......................	26	20	5.90	118	30	58	30	0	0	0
...........................................................................................................................................................................................................................................TTGCGGTGCCCCAGAGCTGTATTCC..............................	25	20	4.75	95	48	34	13	0	0	0
...........................................................................................................................................................................................................................................TTGCGGTGCCCCAGAGCTGTATTC...............................	24	20	4.15	83	0	81	0	0	0	2
..................................................................................................................................................................................................................................TCGTCTTGCTTGCGGTGCCCCAGAG.......................................	25	20	3.50	70	45	25	0	0	0	0
....................................................................................................................................................................................................................................GTCTTGCTTGCGGTGCCCCAGAGCTGTA..................................	28	20	3.45	69	68	0	1	0	0	0
..................................................................................................................................................................................................................................TCGTCTTGCTTGCGGTGCCCCAGAGC......................................	26	20	3.40	68	31	36	1	0	0	0
...................................................................................................................................................................................................................................................CCCCAGAGCTGTATTCCGTACGTC.......................	24	20	2.85	57	8	44	5	0	0	0
............................................................................................................................................................................................................................................TGCGGTGCCCCAGAGCTGTATTCCG.............................	25	20	2.80	56	55	0	0	0	1	0
............................................................................................................................................................................................................................................................TGTATTCCGTACGTCCAGATTGG-G-----------..	24	20	2.40	48	23	24	0	0	0	1
........................................................................................................................................................................................................T-CAAATGTTTGAATTCTTCGGACATT...............................................................	26	20	2.40	48	0	48	0	0	0	0
......................................................................................................................................................................................................................TTCTTCGGACATTCGTCTTGCTTGCGG.................................................	27	20	2.30	46	27	18	0	0	1	0
............................................................................................................................................................................................................................................................TGTATTCCGTACGTCCAGATTGG-..............	23	20	2.15	43	18	16	4	0	4	1
....................................................................................................................................................................................................................................GTCTTGCTTGCGGTGCCCCAGAGC......................................	24	20	2.05	41	41	0	0	0	0	0
....................................................................................................................................................................................................................................GTCTTGCTTGCGGTGCCCCAGAGCT.....................................	25	20	1.95	39	0	39	0	0	0	0
..........................................................................................................................................................................GGCCCCAGTGGCGATTCGAATGGCTC..............................................................................................	26	20	1.80	36	0	36	0	0	0	0
............................................................................................................................................................................................................................................TGCGGTGCCCCAGAGCTGTATTCCGT............................	26	20	1.80	36	33	0	3	0	0	0
..................................................................................................................................................................................................................................TCGTCTTGCTTGCGGTGCCCCAGA........................................	24	20	1.65	33	0	32	1	0	0	0
...............................................................................................................................................................TGATAGGCATGGGCCCCAGTGGCGA..........................................................................................................	25	2	1.50	3	2	1	0	0	0	0
...................................................................................................................................................................................................................................................CCCCAGAGCTGTATTCCGTACGTCC......................	25	20	1.50	30	7	23	0	0	0	0
...............................................................................................................................................................TGATAGGCATGGGCCCCAGTGGCGAT.........................................................................................................	26	2	1.50	3	0	3	0	0	0	0
.................................................................................................................................................................................................................................TTCGTCTTGCTTGCGGTGCCCCAGA........................................	25	20	1.40	28	13	14	1	0	0	0
............................................................................................................................................................................................................................................TGCGGTGCCCCAGAGCTGTATTCC..............................	24	20	1.25	25	25	0	0	0	0	0
..................................................................................................................................................................................................................TGAATTCTTCGGACATTCGTCTTGCTTG....................................................	28	20	1.20	24	19	0	3	0	2	0
....................................................................................................................................................................................................................................GTCTTGCTTGCGGTGCCCCAGAGCTGT...................................	27	20	1.20	24	0	24	0	0	0	0
.....................................................................................................................................................................................................................................................CCAGAGCTGTATTCCGTACGTCCAGA...................	26	20	1.20	24	15	9	0	0	0	0
....................................................................................................................................................................................................................................................CCCAGAGCTGTATTCCGTACGTCCAGA...................	27	20	1.10	22	19	0	3	0	0	0
..................................................................................................................................................................................................................TGAATTCTTCGGACATTCGTCTTG........................................................	24	20	1.05	21	0	9	0	0	12	0
.................................................................................................................................................................................................................................................TGCCCCAGAGCTGTATTCCGTACGTCC......................	27	20	1.05	21	8	11	2	0	0	0
............................................................................................................................................................................................................................................................TGTATTCCGTACGTCCAGATTGG-G-----------CG	26	20	1.05	21	19	0	2	0	0	0
......................................................................................................................................................................................................................TTCTTCGGACATTCGTCTTGCTTGC...................................................	25	20	1.00	20	0	15	4	0	1	0
......................................................................................................................................................................................................TTT-CAAATGTTTGAATTCTTCGGACATT...............................................................	28	20	0.95	19	0	19	0	0	0	0
.....................................................................................................................................................................................................................................TCTTGCTTGCGGTGCCCCAGAGCTGT...................................	26	20	0.95	19	7	5	7	0	0	0
............................................................................................................................................................................................................................................TGCGGTGCCCCAGAGCTGTATTCCGTA...........................	27	20	0.90	18	15	2	1	0	0	0
...........................................................................................................................................................................................................................................TTGCGGTGCCCCAGAGCTGTATTCCG.............................	26	20	0.90	18	0	2	16	0	0	0
....................................................................................................................................................................................................................................GTCTTGCTTGCGGTGCCCCAGAG.......................................	23	20	0.90	18	18	0	0	0	0	0
...................................................................................................................................................................................................................................................CCCCAGAGCTGTATTCCGTACGTCCAGA...................	28	20	0.85	17	14	3	0	0	0	0
......................................................................................................................................................................................................................................................CAGAGCTGTATTCCGTACGTCCAGA...................	25	20	0.85	17	0	14	2	0	1	0
..................................................................................................................................................................................................................................TCGTCTTGCTTGCGGTGCCCCAGAGCTG....................................	28	20	0.85	17	16	1	0	0	0	0
..................................................................................................................................................................................................................................................GCCCCAGAGCTGTATTCCGTACGTC.......................	25	20	0.80	16	3	9	4	0	0	0
....................................................................................................................................................................................................................................GTCTTGCTTGCGGTGCCCCAGAGCTGTAT.................................	29	20	0.75	15	9	4	2	0	0	0
.....................................................................................................................................................................................................................................TCTTGCTTGCGGTGCCCCAGAGC......................................	23	20	0.75	15	2	13	0	0	0	0
.........................................................................................................................................................................................................................TTCGGACATTCGTCTTGCTTGCGG.................................................	24	20	0.75	15	8	7	0	0	0	0
...............................................................................................................................................................................................................................................GGTGCCCCAGAGCTGTATTCCGTACGTC.......................	28	20	0.70	14	7	7	0	0	0	0
....................................................................................................................................................................................................................................GTCTTGCTTGCGGTGCCCCAGAGCTGC...................................	27	20	0.70	14	0	14	0	0	0	0
...................................................................................................................................................................................................................................................CCCCAGAGCTGTATTCCGTACGTCCA.....................	26	20	0.70	14	10	4	0	0	0	0
.................................................................................................................................................................................................................................TTCGTCTTGCTTGCGGTGCCCC...........................................	22	20	0.70	14	0	13	1	0	0	0
........................................................................................................................................................................TGGGCCCCAGTGGCGATTCGAATGGC................................................................................................	26	20	0.65	13	12	0	1	0	0	0
.................................................................................................................................................................................................................................................TGCCCCAGAGCTGTATTCCGTACG.........................	24	20	0.65	13	5	2	4	0	2	0
.................................................................................................................................................................................................................................TTCGTCTTGCTTGCGGTGCCCCAGAGC......................................	27	20	0.65	13	0	13	0	0	0	0
..................................................................................................................................................................................................................................TCGTCTTGCTTGCGGTGCCCC...........................................	21	20	0.60	12	1	11	0	0	0	0
.................................................................................................................................................................................................................................TTCGTCTTGCTTGCGGTGCC.............................................	20	20	0.60	12	0	12	0	0	0	0
..................................................................................................................................................................................................................................TCGTCTTGCTTGCGGTGCCC............................................	20	20	0.55	11	0	11	0	0	0	0
...................................................................................................................................................................................................................GAATTCTTCGGACATTCGTCTTG........................................................	23	20	0.55	11	11	0	0	0	0	0
.................................................................................................................................................................................................................................TTCGTCTTGCTTGCGGTGCCCCAGAG.......................................	26	20	0.55	11	11	0	0	0	0	0
.........................................................................................................................................................................................................................TTCGGACATTCGTCTTGCTTGCGGTGCC.............................................	28	20	0.55	11	0	11	0	0	0	0
...................................................................................................................................................................................................................GAATTCTTCGGACATTCGTCTTGCT......................................................	25	20	0.55	11	0	8	0	0	3	0
.........................................................................................................................................................................................................................TTCGGACATTCGTCTTGCTTGCGGTG...............................................	26	20	0.55	11	9	0	2	0	0	0
......................................................................................................................................................................................................................................................CAGAGCTGTATTCCGTACGTCCAGAT..................	26	20	0.50	10	4	4	2	0	0	0
....................................................................................................................................................................GGCATGGGCCCCAGTGGCGATTCGAAA...................................................................................................	27	2	0.50	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................TTCGGACATTCGTCTTGCTTGCGGC................................................	25	20	0.50	10	0	10	0	0	0	0
..........................................................................................................................................................TGTCATGATAGGCATGGGCCCCAGT...............................................................................................................	25	2	0.50	1	1	0	0	0	0	0
.........................................................................................................................................................TTGTCATGATAGGCATGGGCC....................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................CCCAGAGCTGTATTCCGTACGTC.......................	23	20	0.50	10	3	7	0	0	0	0
...........................................................................................................................................................................................................................................TTGCGGTGCCCCAGAGCTGTATTCCGTA...........................	28	20	0.50	10	9	1	0	0	0	0
.........................................................................................................................................................................................TCGAATGGCTCTATTT-CAAATGTTTGAA............................................................................	28	4	0.50	2	1	1	0	0	0	0
.......................................................................................................................................................................ATGGGCCCCAGTGGCGATTCGAATGGC................................................................................................	27	20	0.50	10	3	7	0	0	0	0
................................................................................................................................................................................................................TTTGAATTCTTCGGACATTCGTCTTGC.......................................................	27	20	0.45	9	0	9	0	0	0	0
....................................................................................................................................................................................................................................................CCCAGAGCTGTATTCCGTACGTCC......................	24	20	0.45	9	1	3	4	0	1	0
...................................................................................................................................................................................................................................................CCCCAGAGCTGTATTCCGTACGTCCAG....................	27	20	0.45	9	5	4	0	0	0	0
.............................................................................................................................................................................................................................GACATTCGTCTTGCTTGCGGTGCCC............................................	25	20	0.45	9	1	8	0	0	0	0
.................................................................................................................................................................................................................TTGAATTCTTCGGACATTCGTCTTGC.......................................................	26	20	0.45	9	6	0	2	0	1	0
...............................................................................................................................................................................................................................CATTCGTCTTGCTTGCGGTGCCCC...........................................	24	20	0.45	9	1	8	0	0	0	0
..................................................................................................................................................................................................................TGAATTCTTCGGACATTCGTCTT.........................................................	23	20	0.40	8	0	7	0	0	1	0
..................................................................................................................................................................................................................TGAATTCTTCGGACATTCGTCTTGCTT.....................................................	27	20	0.40	8	0	8	0	0	0	0
......................................................................................................................................................................................................................TTCTTCGGACATTCGTCTTGCTTGCGGC................................................	28	20	0.40	8	0	8	0	0	0	0
............................................................................................................................................................................................................................................................TGTATTCCGTACGTCCAGATTGG-G-----------CT	26	20	0.35	7	1	5	0	0	1	0
......................................................................................................................................................................................................................................CTTGCTTGCGGTGCCCCAGAGCTGTA..................................	26	20	0.35	7	4	3	0	0	0	0
............................................................................................................................................................................................................................................TGCGGTGCCCCAGAGCTGTATTC...............................	23	20	0.35	7	4	0	0	0	0	3
...................................................................................................................................................................................................................GAATTCTTCGGACATTCGTCTTGC.......................................................	24	20	0.35	7	0	3	0	0	2	2
..........................................................................................................................................................................................................................TCGGACATTCGTCTTGCTTGCGGTGCC.............................................	27	20	0.35	7	0	7	0	0	0	0
........................................................................................................................................................................................................................................TGCTTGCGGTGCCCCAGAGCTGTAT.................................	25	20	0.35	7	7	0	0	0	0	0
.....................................................................................................................................................................................................................................TCTTGCTTGCGGTGCCCCAGAGCTGTA..................................	27	20	0.35	7	0	6	1	0	0	0
........................................................................................................................................................................................................T-CAAATGTTTGAATTCTTCGGACATC...............................................................	26	20	0.35	7	0	7	0	0	0	0
.............................................................................................................................................................................................................................................................GTATTCCGTACGTCCAGATTGG-G-----------C.	24	20	0.35	7	0	7	0	0	0	0
...................................................................................................................................................................................................................GAATTCTTCGGACATTCGTCTTGCTTG....................................................	27	20	0.35	7	7	0	0	0	0	0
...........................................................................................................................................................................................................................................TTGCGGTGCCCCAGAGCTGTATT................................	23	20	0.35	7	3	4	0	0	0	0
...................................................................................................................................................................................................................GAATTCTTCGGACATTCGTCTTGCC......................................................	25	20	0.30	6	0	6	0	0	0	0
............................................................................................................................................................................................................................................................TGTATTCCGTACGTCCAGATT.................	21	20	0.30	6	1	4	1	0	0	0
...............................................................................................................................................................................................................................CATTCGTCTTGCTTGCGGTGCCC............................................	23	20	0.30	6	0	6	0	0	0	0
........................................................................................................................................................................TGGGCCCCAGTGGCGATTCGAATGGCTC..............................................................................................	28	20	0.30	6	6	0	0	0	0	0
.................................................................................................................................................................................................................................................TGCCCCAGAGCTGTATTCCGTACGT........................	25	20	0.30	6	0	0	6	0	0	0
..................................................................................................................................................................................................................TGAATTCTTCGGACATTCGTC...........................................................	21	20	0.30	6	0	6	0	0	0	0
....................................................................................................................................................................................................................................................CCCAGAGCTGTATTCCGTACGTCCAG....................	26	20	0.30	6	0	4	2	0	0	0
........................................................................................................................................................................................................................................TGCTTGCGGTGCCCCAGAGCTGTATTC...............................	27	20	0.30	6	3	3	0	0	0	0
...........................................................................................................................................................................................GAATGGCTCTATTT-CAAATGTTTGAA............................................................................	26	4	0.25	1	0	1	0	0	0	0
.................................................................................................................................................................................................................TTGAATTCTTCGGACATTCGTCTTG........................................................	25	20	0.25	5	5	0	0	0	0	0
...........................................................................................................................................................................................................................................TTGCGGTGCCCCAGAGCTGTATTCCGT............................	27	20	0.25	5	5	0	0	0	0	0
.....................................................................................................................................................................................................................................................CCAGAGCTGTATTCCGTACGTCCAG....................	25	20	0.25	5	3	2	0	0	0	0
......................................................................................................................................................................................................................TTCTTCGGACATTCGTCTTGCTTGCG..................................................	26	20	0.25	5	4	1	0	0	0	0
.............................................................................................................................................................................................................................................GCGGTGCCCCAGAGCTGTATTCCG.............................	24	20	0.25	5	5	0	0	0	0	0
.......................................................................................................................................................................................................................................TTGCTTGCGGTGCCCCAGAGCTGT...................................	24	20	0.25	5	0	5	0	0	0	0
........................................................................................................................................................................TGGGCCCCAGTGGCGATTCGAATGGCT...............................................................................................	27	20	0.25	5	5	0	0	0	0	0
......................................................................................................................................................................................................................TTCTTCGGACATTCGTCTTGCTTG....................................................	24	20	0.25	5	2	2	0	0	0	1
..........................................................................................................................................................................................................................................CTTGCGGTGCCCCAGAGCTGTATTCC..............................	26	20	0.25	5	1	3	1	0	0	0
............................................................................................................................................................................................................................................TGCGGTGCCCCAGAGCTGTATT................................	22	20	0.25	5	4	1	0	0	0	0
.....................................................................................................................................................................................................................................TCTTGCTTGCGGTGCCCCAGAGCT.....................................	24	20	0.25	5	0	4	1	0	0	0
.......................................................................................................................................................................................................................................................AGAGCTGTATTCCGTACGTCCAGATTGG-..............	28	20	0.25	5	5	0	0	0	0	0
......................................................................................................................................................................CATGGGCCCCAGTGGCGATTCGAATGG.................................................................................................	27	20	0.25	5	4	0	1	0	0	0
..................................................................................................................................................................................................................................TCGTCTTGCTTGCGGTGCCCCAG.........................................	23	20	0.25	5	4	0	1	0	0	0
..............................................................................................................................................................................................TGGCTCTATTT-CAAATGTTTGA.............................................................................	22	4	0.25	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................TTCCGTACGTCCAGATTGG-G-----------C.	21	20	0.25	5	0	5	0	0	0	0
..............................................................................................................................................................................................................................................................TATTCCGTACGTCCAGATTGG-G-----------C.	23	20	0.20	4	0	0	3	0	1	0
..........................................................................................................................................................................................................................TCGGACATTCGTCTTGCTTGCGGT................................................	24	20	0.20	4	4	0	0	0	0	0
..................................................................................................................................................................................................................TGAATTCTTCGGACATTCGTCC..........................................................	22	20	0.20	4	0	4	0	0	0	0
....................................................................................................................................................................................................................................GTCTTGCTTGCGGTGCCCCAG.........................................	21	20	0.20	4	3	1	0	0	0	0
................................................................................................................................................................................................................................ATTCGTCTTGCTTGCGGTGCCCCAG.........................................	25	20	0.20	4	2	2	0	0	0	0
........................................................................................................................................................................................................................................TGCTTGCGGTGCCCCAGAGCTGTA..................................	24	20	0.20	4	3	0	1	0	0	0
...........................................................................................................................................................................................................................................TTGCGGTGCCCCAGAGCTGTAT.................................	22	20	0.20	4	2	2	0	0	0	0
...................................................................................................................................................................................................................GAATTCTTCGGACATTCGTCTTGCTTGC...................................................	28	20	0.20	4	0	3	0	0	1	0
.......................................................................................................................................................................................................................TCTTCGGACATTCGTCTTGCTTGCGG.................................................	26	20	0.20	4	0	3	1	0	0	0
....................................................................................................................................................................................................................................GTCTTGCTTGCGGTGCCCCAGAGCTGTT..................................	28	20	0.20	4	3	1	0	0	0	0
............................................................................................................................................................................................................................................................TGTATTCCGTACGTCCAGATTGG-G-----------T.	25	20	0.20	4	2	2	0	0	0	0
....................................................................................................................................................................................................................................................CCCAGAGCTGTATTCCGTACGTCCA.....................	25	20	0.20	4	4	0	0	0	0	0
..................................................................................................................................................................................................................TGAATTCTTCGGACATTCGTCTTGCTTGC...................................................	29	20	0.20	4	3	1	0	0	0	0
.........................................................................................................................................................................................................................TTCGGACATTCGTCTTGCTTGCGGTGCCC............................................	29	20	0.20	4	4	0	0	0	0	0
.............................................................................................................................................................................................................................GACATTCGTCTTGCTTGCGGTGCCCC...........................................	26	20	0.20	4	1	3	0	0	0	0
........................................................................................................................................................................................................................................................GAGCTGTATTCCGTACGTCCAGATTGG-..............	27	20	0.20	4	0	4	0	0	0	0
...................................................................................................................................................................................................................GAATTCTTCGGACATTCGTCTTGCTT.....................................................	26	20	0.20	4	0	3	0	0	1	0
.......................................................................................................................................................................................................................................................AGAGCTGTATTCCGTACGTCCAGATTG................	27	20	0.15	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................................TCTTGCTTGCGGTGCCCCAGAGCTGC...................................	26	20	0.15	3	0	3	0	0	0	0
.......................................................................................................................................................................................................................................TTGCTTGCGGTGCCCCAGAGCTGTAT.................................	26	20	0.15	3	0	2	1	0	0	0
...............................................................................................................................................................................................................................CATTCGTCTTGCTTGCGGTGCCCCA..........................................	25	20	0.15	3	3	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATTCCGTACGTCCAGATTGG-G-----------C.	22	20	0.15	3	0	3	0	0	0	0
.................................................................................................................................................................................................................................TTCGTCTTGCTTGCGGTGCCCCAG.........................................	24	20	0.15	3	0	3	0	0	0	0
........................................................................................................................................................................................................................................................GAGCTGTATTCCGTACGTCCAGATTG................	26	20	0.15	3	0	2	1	0	0	0
........................................................................................................................................................................................................................CTTCGGACATTCGTCTTGCTTGCGG.................................................	25	20	0.15	3	2	0	0	0	1	0
...................................................................................................................................................................................................................................CGTCTTGCTTGCGGTGCCCCAGAGC......................................	25	20	0.15	3	0	3	0	0	0	0
...............................................................................................................................................................................................................................................GGTGCCCCAGAGCTGTATTCCGTACGT........................	27	20	0.15	3	0	3	0	0	0	0
...................................................................................................................................................................................................................................CGTCTTGCTTGCGGTGCCCCAG.........................................	22	20	0.15	3	3	0	0	0	0	0
.............................................................................................................................................................................................................................................................GTATTCCGTACGTCCAGATTGG-..............	22	20	0.15	3	2	1	0	0	0	0
......................................................................................................................................................................................................................................CTTGCTTGCGGTGCCCCAGAGC......................................	22	20	0.15	3	0	3	0	0	0	0
......................................................................................................................................................................................................................TTCTTCGGACATTCGTCTTGCTTGCGGTG...............................................	29	20	0.15	3	3	0	0	0	0	0
......................................................................................................................................................................................................................................CTTGCTTGCGGTGCCCCAGAGCTG....................................	24	20	0.15	3	3	0	0	0	0	0
........................................................................................................................................................................................................................................................GAGCTGTATTCCGTACGTCCAGA...................	23	20	0.15	3	3	0	0	0	0	0
................................................................................................................................................................................................................TTTGAATTCTTCGGACATTCGTCTTG........................................................	26	20	0.15	3	3	0	0	0	0	0
......................................................................................................................................................................................................................TTCTTCGGACATTCGTCTTGCTTGCGGT................................................	28	20	0.15	3	0	0	3	0	0	0
.............................................................................................................................................................................................................................................GCGGTGCCCCAGAGCTGTATTCC..............................	23	20	0.15	3	3	0	0	0	0	0
.......................................................................................................................................................................................................................................TTGCTTGCGGTGCCCCAGAGCTGTA..................................	25	20	0.15	3	3	0	0	0	0	0
......................................................................................................................................................................................................................................................CAGAGCTGTATTCCGTACGTCCAG....................	24	20	0.15	3	0	0	3	0	0	0
................................................................................................................................................................................................................................................GTGCCCCAGAGCTGTATTCCGTACG.........................	25	20	0.15	3	3	0	0	0	0	0
...................................................................................................................................................................................................................................CGTCTTGCTTGCGGTGCCCCAGAGCTG....................................	27	20	0.15	3	3	0	0	0	0	0
.......................................................................................................................................................................................................................TCTTCGGACATTCGTCTTGCTTGC...................................................	24	20	0.15	3	0	2	1	0	0	0
..........................................................................................................................................................................................................................................................GCTGTATTCCGTACGTCCAGATTGG-G-----------C.	27	20	0.10	2	2	0	0	0	0	0
.................................................................................................................................................................................................................................................TGCCCCAGAGCTGTATTCCGTACGTCCAG....................	29	20	0.10	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................CCCAGAGCTGTATTCCGTACGT........................	22	20	0.10	2	0	0	2	0	0	0
...............................................................................................................................................................................................................................CATTCGTCTTGCTTGCGGTGCCCCAGA........................................	27	20	0.10	2	1	1	0	0	0	0
................................................................................................................................................................................................................................ATTCGTCTTGCTTGCGGTGCCC............................................	22	20	0.10	2	0	2	0	0	0	0
..............................................................................................................................................................................................................................................CGGTGCCCCAGAGCTGTATTCCG.............................	23	20	0.10	2	1	0	1	0	0	0
.......................................................................................................................................................................ATGGGCCCCAGTGGCGATTCGAATGG.................................................................................................	26	20	0.10	2	1	1	0	0	0	0
.............................................................................................................................................................................................................................................GCGGTGCCCCAGAGCTGTATTCCGTAC..........................	27	20	0.10	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................CCCAGAGCTGTATTCCGTACGTCCAGAT..................	28	20	0.10	2	1	1	0	0	0	0
........................................................................................................................................................................................................T-CAAATGTTTGAATTCTTCGGACA.................................................................	24	20	0.10	2	0	2	0	0	0	0
.............................................................................................................................................................................CCCAGTGGCGATTCGAATGGCTCTATT..........................................................................................	27	20	0.10	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................CAGAGCTGTATTCCGTACGTCC......................	22	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................GCCCCAGAGCTGTATTCCGTACGTCCAGA...................	29	20	0.10	2	1	1	0	0	0	0
..........................................................................................................................................................................GGCCCCAGTGGCGATTCGAATGGCTCTAT...........................................................................................	29	20	0.10	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................AGAGCTGTATTCCGTACGTCCAGAT..................	25	20	0.10	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................GAGCTGTATTCCGTACGTCCAGATTGG-G-----------..	28	20	0.10	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................TTGCTTGCGGTGCCCCAGAGCTGTATT................................	27	20	0.10	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................TTGCGGTGCCCCAGAGCTGTATTCCGTT...........................	28	20	0.10	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................CTTGCTTGCGGTGCCCCAGAGCT.....................................	23	20	0.10	2	0	2	0	0	0	0
..............................................................................................................................................................................................................................................................TATTCCGTACGTCCAGATTGG-G-----------..	22	20	0.10	2	0	0	2	0	0	0
............................................................................................................................................................................................................AATGTTTGAATTCTTCGGACATTCGTCT..........................................................	28	20	0.10	2	0	2	0	0	0	0
..........................................................................................................................................................................................................................TCGGACATTCGTCTTGCTTGCGGC................................................	24	20	0.10	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................................TTGCGGTGCCCCAGAGCTGTATC................................	23	20	0.10	2	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................GCTGTATTCCGTACGTCCAGATTGG-G-----------..	26	20	0.10	2	1	1	0	0	0	0
.................................................................................................................................................................................................................................................TGCCCCAGAGCTGTATTCCGTACGTCCA.....................	28	20	0.10	2	1	0	1	0	0	0
.........................................................................................................................................................................................................................................GCTTGCGGTGCCCCAGAGCTGTATTC...............................	26	20	0.10	2	0	2	0	0	0	0
....................................................................................................................................................................................................................AATTCTTCGGACATTCGTCTTGC.......................................................	23	20	0.10	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................GCTGTATTCCGTACGTCCAGATTGG-..............	25	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................GCCCCAGAGCTGTATTCCGTACGTCC......................	26	20	0.10	2	1	1	0	0	0	0
.........................................................................................................................................................................GGGCCCCAGTGGCGATTCGAATGG.................................................................................................	24	20	0.10	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................GCTTGCGGTGCCCCAGAGCTGTATT................................	25	20	0.10	2	2	0	0	0	0	0
...........................................................................................................................................................................................................................................TTGCGGTGCCCCAGAGCTGTA..................................	21	20	0.10	2	0	1	1	0	0	0
....................................................................................................................................................................................................................................GTCTTGCTTGCGGTGCCCCAGAGCTT....................................	26	20	0.10	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................CCCCAGAGCTGTATTCCGTACGT........................	23	20	0.10	2	0	0	2	0	0	0
.........................................................................................................................................................................................................................TTCGGACATTCGTCTTGCTTGCG..................................................	23	20	0.10	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................CCAGAGCTGTATTCCGTACGTCCA.....................	24	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................TCGTCTTGCTTGCGGTGCCCCAGAGCT.....................................	27	20	0.10	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................TTCGTCTTGCTTGCGGTGCCCCA..........................................	23	20	0.10	2	0	0	2	0	0	0
.................................................................................................................................................................................................................................................TGCCCCAGAGCTGTATTCCGTACGTT.......................	26	20	0.10	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................GCTTGCGGTGCCCCAGAGCTGTAT.................................	24	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................GCCCCAGTGGCGATTCGAATGGCTCT.............................................................................................	26	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................CGATTCGAATGGCTCTATT..........................................................................................	19	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................CCCCAGAGCTGTATTCCGTACGTCCAGAT..................	29	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................TCTTGCTTGCGGTGCCCCAGAGCTGTAC.................................	28	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................TTGCTTGCGGTGCCCCAGAGC......................................	21	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................GTTTGAATTCTTCGGACATTCGTCTTGC.......................................................	28	20	0.05	1	0	0	1	0	0	0
......................................................................................................................................................................CATGGGCCCCAGTGGCGATTCGAATGGC................................................................................................	28	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................TT-CAAATGTTTGAATTCTTCGGACATT...............................................................	27	20	0.05	1	0	0	1	0	0	0
................................................................................................................................................................................................................................ATTCGTCTTGCTTGCGGTGCCCCA..........................................	24	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................TCGGACATTCGTCTTGCTTGCGGTG...............................................	25	20	0.05	1	0	1	0	0	0	0

droBip1

G-------------------------------------------------------------------------------------------------------------------------------------------------------ATTGTCATGATAGACGTGGGCCCCAGAGGCGATTCGAAGGGCTCTATTTTCGAAAGCTTGCATAGTTCGGACATTCGTCTTGCTCGCAGTGCTCCAGAGCTGTATGCCGTACGTCCAGATTGG-GT---GTATTATTG	Size	Hit Count	Total Norm	Total
No Reads

droWil2

T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTGGAATCGTTGGAGGATTTCAACATTTGAGTCGGACGCCGTGCCCCAGAGTTGAATCCCATAGGTCCATACAGG-TT---TTAGTATGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATTTC.....................................................................	25	4	3.50	14	0	7	0	7	0
...................................................................................................................................................................................................................................TGAGTCGGACGCCGTGCCCCAGAGT......................................	25	3	3.00	9	2	7	0	0	0
............................................................................................................................................................................................................................................................TGAATCCCATAGGTCCATACAGG-TT---T........	26	4	3.00	12	0	10	0	2	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATTTCA....................................................................	26	4	2.50	10	0	8	0	2	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATTTCAA...................................................................	27	4	2.50	10	0	9	0	1	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATT.......................................................................	23	4	2.00	8	0	2	0	6	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATTT......................................................................	24	4	1.50	6	0	3	0	3	0
.........................................................................................................................................................................................................TGGAATCGTTGGAGGATTTCAACATT...............................................................	26	3	1.33	4	0	3	0	1	0
................................................................................................................................................................................................................................................................TCCCATAGGTCCATACAGG-TT---TTAGTA...	27	4	1.25	5	0	5	0	0	0
...................................................................................................................................................................................................................................TGAGTCGGACGCCGTGCCCCAGAG.......................................	24	5	1.20	6	0	6	0	0	0
..........................................................................................................................................................................................................................TTCAACATTTGAGTCGGACGCCGTGC..............................................	26	3	1.00	3	0	2	0	1	0
..................................................................................................................................................................................................................................TTGAGTCGGACGCCGTGCCCCAGAGT......................................	26	3	1.00	3	0	3	0	0	0
............................................................................................................................................................................................................................................CGCCGTGCCCCAGAGTTGAATCCCA.............................	25	3	1.00	3	0	0	0	3	0
.....................................................................................................................................................................................................GCTTTGGAATCGTTGGAGGATTTCAA...................................................................	26	4	1.00	4	0	4	0	0	0
.....................................................................................................................................................................................................GCTTTGGAATCGTTGGAGGATTT......................................................................	23	4	0.75	3	0	3	0	0	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATTTT.....................................................................	25	4	0.75	3	0	0	0	3	0
...........................................................................................................................................................................................................................TCAACATTTGAGTCGGACGCCGTGC..............................................	25	3	0.67	2	0	0	0	2	0
..............................................................................................................................................................................................................................................CCGTGCCCCAGAGTTGAATCCCATAGG.........................	27	3	0.67	2	0	1	0	1	0
.................................................................................................................................................................................................................................TTTGAGTCGGACGCCGTGCCCCAG.........................................	24	6	0.67	4	0	3	0	1	0
T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTGGAATCGTTGGAGGATT.......................................................................	24	4	0.50	2	0	0	0	2	0
............................................................................................................................................................................................................................................................TGAATCCCATAGGTCCATACAGG-TT---.........	25	4	0.50	2	0	2	0	0	0
...................................................................................................................................................................................................................................TGAGTCGGACGCCGTGCCCCAGA........................................	23	5	0.40	2	0	2	0	0	0
..................................................................................................................................................................................................................................TTGAGTCGGACGCCGTGCCCCAGAGTTG....................................	28	3	0.33	1	0	1	0	0	0
.................................................................................................................................................................................................................................TTTGAGTCGGACGCCGTGCCCCAGAGT......................................	27	3	0.33	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................AGAGTTGAATCCCATAGGTCCATACA.................	26	3	0.33	1	0	0	0	1	0
..................................................................................................................................................................................................................................TTGAGTCGGACGCCGTGCCCCAG.........................................	23	6	0.33	2	0	2	0	0	0
...........................................................................................................................................................................................................................TCAACATTTGAGTCGGACGCCGTGCCC............................................	27	3	0.33	1	0	1	0	0	0
............................................................................................................................................................................................................................................CGCCGTGCCCCAGAGTTGAATCCCATA...........................	27	3	0.33	1	0	0	0	1	0
....................................................................................................................................................................................................................................................CCCAGAGTTGAATCCCATAGGTCCA.....................	25	3	0.33	1	0	0	0	1	0
...........................................................................................................................................................................................................................TCAACATTTGAGTCGGACGCCGTGCCCC...........................................	28	3	0.33	1	0	1	0	0	0
..................................................................................................................................................................................................................................TTGAGTCGGACGCCGTGCCCCAGAGTTA....................................	28	3	0.33	1	0	1	0	0	0
................................................................................................................................................................................................................................ATTTGAGTCGGACGCCGTGCCCCAGAG.......................................	27	3	0.33	1	0	1	0	0	0
........................................................................................................................................................................................................TTGGAATCGTTGGAGGATTTCAACATT...............................................................	27	3	0.33	1	0	0	0	1	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATTTCAACA.................................................................	29	3	0.33	1	0	0	1	0	0
.........................................................................................................................................................................................................TGGAATCGTTGGAGGATTTCAAC..................................................................	23	3	0.33	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................TTGAATCCCATAGGTCCATACAGG-TT---.........	26	3	0.33	1	0	0	0	1	0
...........................................................................................................................................................................................................................TCAACATTTGAGTCGGACGCCGTG...............................................	24	3	0.33	1	0	1	0	0	0
...................................................................................................................................................................................................................................TGAGTCGGACGCCGTGCCCCAGAGTTA....................................	27	3	0.33	1	1	0	0	0	0
...................................................................................................................................................................................................................................TGAGTCGGACGCCGTGCCCCAGAGTAA....................................	27	3	0.33	1	0	1	0	0	0
....................................................................................................................................................................................................................................................CCCAGAGTTGAATCCCATAGGTCCAT....................	26	3	0.33	1	0	0	0	1	0
.................................................................................................................................................................................................................................................TGCCCCAGAGTTGAATCCCATAGGT........................	25	3	0.33	1	0	0	0	1	0
.....................................................................................................................................................................................................................................AGTCGGACGCCGTGCCCCAGAGT......................................	23	3	0.33	1	0	1	0	0	0
........................................................................................................................................................................................................................................................GAGTTGAATCCCATAGGTCCATACAGG-..............	27	3	0.33	1	0	1	0	0	0
...................................................................................................................................................................................................................................TGAGTCGGACGCCGTGCCCCAGAGTT.....................................	26	3	0.33	1	0	1	0	0	0
.................................................................................................................................................................................................................................................TGCCCCAGAGTTGAATCCCATAGGTCCA.....................	28	3	0.33	1	0	0	0	1	0
...............................................................................................................................................................................................................................CATTTGAGTCGGACGCCGTGCCCCAG.........................................	26	3	0.33	1	0	1	0	0	0
..............................................................................................................................................................................................................TCGTTGGAGGATTTCAACATTTGAGT..........................................................	26	3	0.33	1	0	1	0	0	0
................................................................................................................................................................................................................................ATTTGAGTCGGACGCCGTGCCCCAG.........................................	25	4	0.25	1	0	1	0	0	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATTTTC....................................................................	26	4	0.25	1	0	1	0	0	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATC.......................................................................	23	4	0.25	1	0	1	0	0	0
............................................................................................................................................................................................................................................................TGAATCCCATAGGTCCATACAGG-T.............	24	4	0.25	1	0	0	0	1	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATTTCT....................................................................	26	4	0.25	1	0	0	0	1	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGG..........................................................................	20	4	0.25	1	0	0	0	1	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATTTTG....................................................................	26	4	0.25	1	0	1	0	0	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATTTCAG...................................................................	27	4	0.25	1	0	1	0	0	0
......................................................................................................................................................................................................CTTTGGAATCGTTGGAGGATTTC.....................................................................	23	4	0.25	1	0	1	0	0	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATTTA.....................................................................	25	4	0.25	1	0	1	0	0	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATTTG.....................................................................	25	4	0.25	1	0	1	0	0	0
..................................................................................................................................................................................................................................TTGAGTCGGACGCCGTGCCCCAGA........................................	24	5	0.20	1	0	1	0	0	0
....................................................................................................................................................................................................TGCTTTGGAATCGTTGGAGGATTA......................................................................	24	5	0.20	1	0	1	0	0	0
..................................................................................................................................................................................................................................TTGAGTCGGACGCCGTGCCCCAGAG.......................................	25	5	0.20	1	0	1	0	0	0
.................................................................................................................................................................................................................................TTTGAGTCGGACGCCGTGCCCCAGAG.......................................	26	5	0.20	1	0	0	0	1	0
.................................................................................................................................................................................................................................TTTGAGTCGGACGCCGTGCCCCAGA........................................	25	5	0.20	1	0	0	0	1	0
........................................................................................................................................................................................................................................CGGACGCCGTGCCCCAGAG.......................................	19	7	0.14	1	0	0	1	0	0

dsi_23308

3l:22510810-22510959 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-28.9	-28.7	-28.5