ID:

dsi_23290

 Coordinate:

2r:11824352-11824622 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.9 -4.9 -4.6 -4.6

Flybase annnotation

exon [2r_11824623_11824855_-]; CDS [2r_11824623_11824855_-]; exon [2r_11824073_11824351_-]; CDS [2r_11824073_11824351_-]; intron [2r_11824352_11824622_-]

No Repeatable elements found

mature
  1. dsi_23290  2r:11824387-11824402 -
  2. 3l:5792925-5792940 -
star

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAATCGAGGACATCAATCAGAAGGAAAATATACAAACGGCAACCGTTCAGGTGCGTAGACATCACTACCCTCTTCCCACCTGCTTCGACATCCATTCCAATGCTGTGTTTGCATTTTTATGCAAATTTCCTGTGTGATTCGTGTTATCCGAAGTGACATGGGTTCTGACAGCACGATTTTACATTTGAATTGAAGATTGGACACGTCCGAATGACCATTTAGTGCAGGCGTTGCAGCTTTTCCTACAACTATAACATATATATACATGCATGCTGTGGAAATTAAATTCGGTTTCTTACCACTTTTGTTGTGACTTTGCAGAACATCGAGTTCCGATTGCGAAAGATGGAGGAATCCTCGGAGCAGATACT
******************************************************************************************************************************************************************************************************************************************************************************.((............................................))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
...........ATCAATCAGAAGGAAAAT...................................................................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TGCTGTGGAAATTAAA..................................................................................... 16 0 2 1.50 3 0 0 3 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................ACTTTTGTTGTGACTTTGC.................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.AATCGAGGACATCAATCAGAA............................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................ACAAACGGCAACCGTTCAG................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................................TACCACTTTTGTTGTGACTTTG..................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................TTTGAATTGAAGATTGGACACGTCCGAA................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.......TGACATCAATCAGAACGAAA........................................................................................................................................................................................................................................................................................................................................................ 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................CGCGAAAGATCGAGGAATCCG............. 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................GGGTTCTGATCGCAAGAT.................................................................................................................................................................................................. 18 3 20 0.25 5 0 0 0 4 1 0 0 0 0
....CGCGGACATCATGCAGAAGGA.......................................................................................................................................................................................................................................................................................................................................................... 21 3 4 0.25 1 0 1 0 0 0 0 0 0 0
........GACATCAATCAGAACGAACTT...................................................................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0
.............................................................CCACAACCCTCTTCCCACC................................................................................................................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................................................................ATATACCTGGATGCTGT............................................................................................... 17 2 6 0.17 1 0 0 0 0 0 0 0 1 0
.........ACATCAATCAGAACGA.......................................................................................................................................................................................................................................................................................................................................................... 16 1 6 0.17 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................TCTACATGCATGCTGCGAAA........................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 1 0
.......TGACATCAATCAGAACGA.......................................................................................................................................................................................................................................................................................................................................................... 18 2 9 0.11 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................TATGATTCGTGTTAT................................................................................................................................................................................................................................ 15 1 16 0.06 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................TTCTGACACCACGACT................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TTTAGCTCCTGTAGTTAGTCTTCCTTTTATATGTTTGCCGTTGGCAAGTCCACGCATCTGTAGTGATGGGAGAAGGGTGGACGAAGCTGTAGGTAAGGTTACGACACAAACGTAAAAATACGTTTAAAGGACACACTAAGCACAATAGGCTTCACTGTACCCAAGACTGTCGTGCTAAAATGTAAACTTAACTTCTAACCTGTGCAGGCTTACTGGTAAATCACGTCCGCAACGTCGAAAAGGATGTTGATATTGTATATATATGTACGTACGACACCTTTAATTTAAGCCAAAGAATGGTGAAAACAACACTGAAACGTCTTGTAGCTCAAGGCTAACGCTTTCTACCTCCTTAGGAGCCTCGTCTATGA
****************************************************.((............................................))****************************************************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
.............................................................................................................................................................................GCTAAAATGTAAACTTAACT.................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TCACTGTACCCAAGACTGTCGT...................................................................................................................................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TAAAATGTAAACTTAACT.................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................CAAGTCCACGAATCTGT...................................................................................................................................................................................................................................................................................................................... 17 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
......AACTGTAGTTAGTCTTGCTT......................................................................................................................................................................................................................................................................................................................................................... 20 3 17 0.41 7 0 0 7 0 0 0 0 0 0 0
......................................................................................................................................................................................TAAGCTTTACTTCTAGCCTGT........................................................................................................................................................................ 21 3 4 0.25 1 0 0 0 0 0 1 0 0 0 0
.........................................................................AGGGTGGTCGAAGCTG.......................................................................................................................................................................................................................................................................................... 16 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................TAGGCTTGACTGTACC.................................................................................................................................................................................................................. 16 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0
........CTGTAGTTAGTCTTGCTTGAA...................................................................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..............................................TGTCCACGCATCAGTAGTTA................................................................................................................................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................ATATATCTGTACGTAC................................................................................................... 16 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................ACGCTTTCTGCGTCCTTACG.............. 20 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0
.......................CTTTTATAGGTTTGCGGT.......................................................................................................................................................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................CCAAGAATGTCTTGCT................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................TAGGTAAGGTTGCGACAAG....................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
........................................................................AAGGGTGGTCGAAGCTT.......................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...............................................................................CACGAATCGGTAGGTAAGG................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:11824302-11824672 - dsi_23290 AAATCGAGGACATCAATCAGAAGGAAAATATACAAACGGCAACCGTTCAGGTGCGTAGACATC------AC----------------T--------------------------------ACCCT--CTTCC--------CACCTGCTT------------CGACATCCA---------------TTC-CAATGCT--GTG--TTT-------GCATTTTTATGCAAATTTCC----------TGTGTGATTCGTGTTATCCGA-AGTGACATGGGTTCTGACAG---CACGATTTTACAT------------TTGAATTGAAGAT-----TGGACACGTCC-----GAATGACCATT---T----------AGTGCAGGCGTTGCAGCTTTTCCT-----ACAACTAT-----AA-C--AT--AT-------------------ATATACAT-------GCATGCTGTGGAA--------------ATTAAATTCGGTTTCTTACCACT-TTTG---------------------------------------------------------------------TTGTGAC-TTTGCAGAACATCGAGTTCCGATTG-CGAAAGATGGAGGAATCCTCGGAGCAGATACT
droSec2 scaffold_1:8647030-8647400 - AAATCGAGGACATCAATCAGAAGGAAAATATACAAACGGCAACCGTTCAGGTGCGTAGACATC------AC----------------T--------------------------------ACCCT--TTTCC--------CACCTGCTT------------CGACATCCA---------------TTC-CAATGCT--GTG--TTT-------GCATTTTTATGCAAATTTCC----------TGTGTGATTCGTGTTATCCGA-AGTGACATGGGTTCTGACAG---CACGATTTTACAT------------TTGAATTGAAGAT-----TGGACACGTCC-----GAATGACCATT---T----------ACTGCAGGCGTTGCAGCTTTTCCT-----ACAGCTAT-----AA-C--AT--AT-------------------ATATACAT-------GCATGCTGGGGAA--------------ATTAAATTCGGTTCCTTACCACT-TTTG---------------------------------------------------------------------TTGTGAC-TTTGCAGAACATCGAGTTCCGATTG-CGAAAGATGGAGGAATCCTCGGAGCAGATACT
dm3 chr2R:11154426-11154784 - AAATCGAGGACATCAATCAGAAGGAAAACATACAAACGGCCACCGTTCAGGTGCGTAGTCATC------AC----------------T--------------------------------ACCCT--CTTCC--------CACCTGCTT------------CGACATCCA---------------TTC-CAATGCT--GTG--TTT-------GCATTTTTATGCAAATTTTC----------TGTGTGATTCGTGTTATCCGA-AGTGACATGGGTTTTGACAG---CACGATTTTACAT------------TTGAATTGAAGAT-----TGGACACGTCC-----GGATGGCCATT---T----------ACTGCAGGCGTTGCAGCTTTTCCT-----AGAACTA-----------------------------------------ACAT-------ACATGCTATGGAA--------------ATTAAATTCGGTTTCTTACCACT-TTTG---------------------------------------------------------------------TTGTGCC-TTTGCAGAACATCGAGTTCCGATTG-CGAAAGATGGAGGAATCCTCGGAGCAGATACT
droEre2 scaffold_4845:14715599-14715965 + AAATCGAGGACATCAATCAGAAGGAAAACATACAAACGGCCACCGTTCAGGTGTGTAGACATT------AC-----------------------------------------------GTACCCT--CATCC--------CAACTACTG------------TGACATCCA---------------TCT-GAATGCT--GTG--TTT-------GCATTTTTATGCAAATTTCC----------TGTGCGATTCGTGTTATCCGA-AGTAACATGGGTTCTGACAG---CACGACTTTGCAT------------TTGAATTGAATAT-----TGGACACGTCC-----GAATGACCATT---T----------AGTGCAGCCGTTGCAGCTTTTCCT-----ACAACTAG--------C--AT--GC-------------------AT----AT-------ACATGCTGTGGAA--------------ATTAAATTCGATTTCTTATCACT-TTTC---------------------------------------------------------------------ACGTGACTTTTGCAGAACATCGAGTTCCGATTG-CGAAAGATGGAGGAATCCTCGGAGCAGATACT
droYak3 2R:11076116-11076492 - AAATCGAGGACATCAATCAGAAGGAAAACATTCAAACGGCCACCGTTCAGGTGCGTAGACATC------AG----------------T----------------------------ACCCACCAT--CATCC--------CACCTGCTT------------CGACATTTA---------------TCC-CAATGCT--GTG--TTT-------GCATTTTTATGCAAATTTCC----------AGTGTGATTCGTGTTATCCGA-AGTAACATGGGTTCTGACAG---CACGATTTTACAT------------TTGAATTGAAAAT-----TGGACACGTCC-----GAATGACCATT---T----------ACTGCAGCCGTTGCAGCTTTTCCA-----ACAACTAT--------C--AT--GC-------------------AT----ATACGCTGAATATGCTGTGGAA--------------ATTAAATTCGATTTCTTACCACT-TTTC---------------------------------------------------------------------ATGTGTCTTTTGCAGAACATCGAGTTCCGATTG-CGAAAGATGGAGGAATCCTCGGAGCAGATACT
droEug1 scf7180000409672:11997-12425 - AAATCGAGGACATCAATCAGAAGGAAAACATACAGACAGCCACCGTTCAGGTGTGTAGTCAGC------AG----------------T--------------------------------ACC-------------------CATCCTT------------TGACAT-------------------CTCAATTCACATCTG--TTG-------GCATTTTTATGCAAATATCC----------TGGGTGATTCGTGTAACCCAAAACTGACATGGGTACTGACAG---CACGTCTTTACAT------------TCGAATTGAAAAT-----TGGACACGTCC-----GAGTGACCATT---T----------ACTGCAGCCGTTGCAGCTTTTCCTTT---ACAAT---TGTTCCAGCACATAA--AAAAAAAGA--AGAAAAGAATATACAT-------ACATGCAGTGGAA--------------ATTTAATTCGATTTATCATCAGTTTTTAATTTAATATTCGAATGCCACACCAATGAATATACAAC---------------TCTGT---------TCATTGTG----TTCCAGAACATCGAGTTCCGATTG-CGGAAAATGGAGGAGTCCTCGGAGCAGATACT
droBia1 scf7180000302143:257782-258172 + AAATCGAGGACATCAATCAGAAGGAGAACATACAGACGGCCACCGTTCAGGTGCGTAGTCAGC------AG----------------TTTGAA-----------------------C-AGACCCC--CAGCC--------CCCTTGCTT------------TGACAT-------------------CC-CAATCCT--GTGAGTTT-------GCATTTTTATGCAAATGTCC----------TGTGTGATTCGTGTTATCCAA-ACTGACATGGGTTCTGACAG---CACGTCTTAACGT------------CTGAATTGAAATT-----TGGACACGTCC-----GAATGACCATT---T----------GCTGCAGGCGCTGCAGCATTTTCTCT---GCCAT---TGTTCGA-C--AT--AC--------------------------C-------ATACGCAGTGGAA--------------ATTTAATTCGATTTATCGCCAGT-TTTAACTTG----------------------------------------------TTCTGTCTTGTTCTGT------CAC-TTTCCAGAACATCGAGTTCCGGCTG-CGAAAGATGGAGGAGTCCTCGGAGCAGATACT
droTak1 scf7180000415878:854987-855373 + AAATCGAGGACATCAATCAGAAGGAGAACATACAAACGGCCACCGTTCAGGTGCGTTATCTTC-----------------------------------------------------------------------------CCCTTGTTT------------TGACAA------------------CCC-CAATCCT--GTG--TGT---CCTCGCATTTTTATGCAAATATCC----------TGTGTGATTCGTGTTAGCCAA-ACTGACATGGGTTCTGACAGCAGCACGTCTTAACAT------------TTGAATTGAAAAT-----TGGACACGTCC-----GACTGGCCATT---T----------ACTGCAGCCGTTGCAGCTTTCGCTCT---GCTAT---TGCTCAA-C--AT--ATA----------CAGTATATTTCCACAT-------ATATGCAGGGGAA--------------ATTTAATTCGATTTAACACCACT-TTTAATTTGATA------------------------------------------TTTCTGT---------T------CAT-TTGCCAGAACATCGAGTTCCGCCTG-CGGAAGATGGAGGAATCCTCCGAGCAGATACT
droEle1 scf7180000491214:4012643-4012896 - AAATCGAGGACATCAATCAGAAGGAAAACATACAGACGGCCACCGTTCAGGTGTGTGGTAATC------AG----------------A--------------------------------GCTCCCTTCTC-CTTTTTTGCCCTTGTTTGTTTTCTTTTTGTGACAT-------------------CT-CAATCCT--GTG--TCT-------GCATTTTGATGTAAATTTTG----------TGTGTGATTCGTGTTATCCGA-AATGACATGGGTACTGACAG---CATG----------------------TGAATTGAAAAT-----TGGACACGTCC-----GAGTGACCATT---T---------CACTGCAGCCGTTGCAGATTTTTAT-----AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000776849:676735-677154 + AAATCGAGGACATCAATCAGAAGGAAAACATACAGACGGCCACCGTTCAGGTGTGTAGTCATC------AG----------------A----------------------------CCGCCCCCT--CATC---------CCCTTGTTT------------TGACAT-------------------CT-CAATCCT--GTG--TTT-------GCATTTTTATGTAAATTTCG----------TGTGTGATTCGTGTTATCCGA-AATGACATGGGTACTGACAG---CACGTCTTGACAT------------GTGAATTGAAAAT-----TGGACACGTCC-----GAATGACCGTT---T---------TGCTGCAGGCGTTGCAGCTTTTCTTTT---ACCATCACCGTTCTGA---ATAAAT----------ATAAT----------AC-------ATATGCAATGGAATATATCCT---TCCGTTTAATTGGATTTGCCACCGTT-TCTAATTTAATAATCGAATGAAACG------------------------TTGTATTTCTTT---------A------TAT-GTTACAGAACATTGAGTTTCGGCTG-CGAAAGATGGAGGAATCCTCGGAGCAGATACT
droFic1 scf7180000453342:767477-767916 + AAATCGAGGACATCAATCAGAAGGAGAACATACAGACGGCCACCGTTCAGGTGCGTAGTCAGC------AT----------------C--------------------------------ATCCC--CGTTT------CACCCTTGTTT------------TGACAT-------------------CT-CAATCCT--GTG--TTT-------GCATTCTCATGCAAATATTC----------CGGGCGATTCGTATTTCCCAA-ACTGACATGGGTACTGACAG---CACGTCTCCGCAT------------TTCAATTGAAAAT-----TGGACACGTCC-----GAGTGACCATT---T---------TACTGCAGCCGTTGCAGCTTTTCCTTT---ACTGCTATCGTTCAGG---ATAA--ACGAGGGGATAAAAA----------AT-------GAATTCGATGGAATATATCCT---TCCATTTAATTTGATTTGTCACCTCT-TTTAATTTAATAACCGGATGAAGCGTCGATAAAT--ACAGC-------TTTG--TGTCTGT---------T------CGT-TTTCCAGAACATTGAGTTCCGGCTG-CGGAAGATGGAGGAGTCCTCGGAGCAGATTCT
droKik1 scf7180000302476:162464-162760 - AAATCGAGGACATCAATCAGAAGGAGAACATACAAACGGCCACCGTTCAGGTGAGTAGGTTTTTCCCCCTCCTAGCAT---------T--------------------------------TTC---------------------CTCTT------------TGACAT-------------------TTCGAATTCC--ATG--TTT-------GCGTTTTTATGCAAATTTCCCCTGTGTGAGTGTGTGATTCGTGTTTACCAA-ACTGACATGGGTTCTGACAG---CACGTCTTCGCAT------------TTGAATTGAAAAT-----TTAACACGTCC-----GAATGGTCATA---G--A-TACCAGAATGCAGCCGGTGCAGTCTTTTTTTTTATGCA---------------------------------------------ACTT-------ATATGCTTTGAGA--------------ATT-------GTTTTTTAC------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:7572683-7572974 - AAATCGAGGACATCAATCAAAAGGAGAACATTCAGACCGCCACCGTTCAGGTGGGTAGCCATC------AT----------------CTGGCACTTTAGTCCTTTACTG-------CCG--CCC-------------CCACTACACTTT------------ACACA-------------------TCC-CAATCTG--GTG--TCCGGACTCCCGATTCTTATGTAAATTTCG----------TGTGTGATTCGTGTTTACCAA-GCTGACATGGGTACTGACAG---CACGTCTTCGCATTCGCATTCGTATTCGAATTGAAAAT-----TGGACACGTCC-----GGATGACCAATGTGT----------GCAGTAGCCATTGCAGGATTCCTTTT---ACGACCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396759:1243934-1244182 + AAATCGAGGACATCAATCAAAAGGAGAACATTCAGACCGCCACCGTTCAGGTGGGTAGCCATC------AT----------------CTGGCACTTTAGTCCTTTACTGCGACAGTCCA--CCC------CC--------CATACACTT------------TAACAT-------------------CC-CAATCTG--GTG--TCC-------GGATTCTTATGTAAATTTCG----------TGTGTGATTCGTGTTTACCAA-GCTGACATGGGTACTGACAG---CACGTCTTCCCAT------------TCGAATTGAAAAT-----TGGACACGTCC-----GGATGACCAGT---G----------TGTGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:545590-545952 - AAATCGAAGACATCAATCAAAAGGAGAACATACAAACAGCTACGGTGCAGGTGCGTCTCCATC------TCCT-----ACACCCCTA--------------------------------------------CCCTCCGCACCCTAGTTC------------AGAG---CA---------------TCC-TAATCTT--TGG--TTT-------GAATCTTTATTCAAATATCT----------AATACGATTTCTGTTCCCCGC-ATTGACATGGGTATTGGCA------CG-------AA------------TGGAATTGAAAATGTCCATGGCCATGTCCATTCGGAACGTTCATTGTGCTGCTCCTCATGCTGCAGCTGGTGCACGCC------------------------------------------------------------------------TTTGACGGAAGCTTTCCTCACTCC---------------------------------------------------------------GCTGTATTGTTTG--T---------ATTCTTT------CAC-TTTATAGAACATTGAATTTCGTTTG-CGGAAGATGGAGGAGTCGTCCGAACAGATACT
droPer2 scaffold_2:710611-710973 - AAATCGAGGACATCAATCAAAAGGAGAACATACAAACAGCTACGGTGCAGGTGCGTCTCCATC------TCCT-----ACACCCCTA--------------------------------------------CCCTCCGCACCCTAGTTC------------AGAG---CA---------------TCC-TAATCTT--TGG--TTT-------GAATCTTTATTCAAATATCT----------AATACGATTTCTGTTCCCCGC-ATTGACATGGGTATTGGCA------CG-------AA------------TGGAATTGAAAATGTCCATGGCCATGTCCATTCGGAACGTTCATTGTGCTGCTCCTCATGCTGCAGCTGGTGCACGCC------------------------------------------------------------------------TTTGACGGAAGCTTTCCTCACTCC---------------------------------------------------------------GCTGTATTGTTTG--T---------ATTCTTT------CAC-TTTATAGAACATTGAATTTCGTTTG-CGGAAGATGGAGGAGTCGTCCGAACAGATACT
droWil2 scf2_1100000004510:1316762-1316840 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGTTTCTCATTCCT-T---------------------------------------------------------------------T------CTA-TTTGCAGAACATTGAGTTCCGTTTG-CGCAAAATGGAAGAATCATCCGAACAGATACT
droVir3 scaffold_10324:896466-896539 + TTGTTGTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGT-------GT-GTTGCAGAACATTGAATTCCGTTTG-CGCAAAATGGAGGAATCATCGGAGCAAATACT
droMoj3 scaffold_6496:2766016-2766220 + AAATCGAGGACATCAATCAAAAGGAGAACATACAAACGGCTACAGTACAGGTGTGTAGTACAC------AC----------------A--------------------------------CACAC--TCACA--------CACATTTAC------------TAACACACATTTACTCAGTGTTAAGCC-CACTTTT--TAG--TTT---------TTTGTTATGCAAATTCAC----------AATTTTCTCTGTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCACATTGATTTGGGTTTAACGCGCATTGACAGCCAAGTCGAAG--------
droGri2 scaffold_15245:8583453-8583610 + AAATCGAGGACATCAATCAAAAGGAGAACCTTCAAACGGCCACTGTGCAGGTGTGTGTAGCAC------A--------------------------------------------------CACCT--TTACG--------GA------T------------CTAAATCCA----TTCAACTTTTATCA-CACT-----------TT-------TT-ATTTAATGCAAATTTAC----------AATTCT-TTTCTGTTACGCAC-ATTGATTTGGGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAATCGAGGACATCAATCAGAAGGAAAATATACAAACGGCAACCGTTCAGGTGCGTAGACATC------AC----------------T--------------------------------ACCCT--CTTCC--------CACCTGCTT------------CGACATCCA---------------TTC-CAATGCT--GTG--TTT-------GCATTTTTATGCAAATTTCC----------TGTGTGATTCGTGTTATCCGA-AGTGACATGGGTTCTGACAG---CACGATTTTACAT------------TTGAATTGAAGAT-----TGGACACGTCC-----GAATGACCATT---T----------AGTGCAGGCGTTGCAGCTTTTCCT-----ACAACTAT-----AA-C--AT--AT-------------------ATATACAT-------GCATGCTGTGGAA--------------ATTAAATTCGGTTTCTTACCACT-TTTG---------------------------------------------------------------------TTGTGAC-TTTGCAGAACATCGAGTTCCGATTG-CGAAAGATGGAGGAATCCTCGGAGCAGATACTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........ATCAATCAGAAGGAAAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTGGAA--------------ATTAAA.............................................................................................................................................................1621.50300000000300000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-TTTG---------------------------------------------------------------------TTGTGAC-TTTGC.....................................................1911.00100000001000000000
.AATCGAGGACATCAATCAGAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
...............................ACAAACGGCAACCGTTCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCACT-TTTG---------------------------------------------------------------------TTGTGAC-TTTG......................................................2211.00110000000000000000
............................................................................................................................................................................................................................................................................................................T------------TTGAATTGAAGAT-----TGGACACGTCC-----GAA............................................................................................................................................................................................................................................................................................................2811.00100000010000000000
droSec2
AAATCGAGGACATCAATCAGAAGGAAAATATACAAACGGCAACCGTTCAGGTGCGTAGACATC------AC----------------T--------------------------------ACCCT--TTTCC--------CACCTGCTT------------CGACATCCA---------------TTC-CAATGCT--GTG--TTT-------GCATTTTTATGCAAATTTCC----------TGTGTGATTCGTGTTATCCGA-AGTGACATGGGTTCTGACAG---CACGATTTTACAT------------TTGAATTGAAGAT-----TGGACACGTCC-----GAATGACCATT---T----------ACTGCAGGCGTTGCAGCTTTTCCT-----ACAGCTAT-----AA-C--AT--AT-------------------ATATACAT-------GCATGCTGGGGAA--------------ATTAAATTCGGTTCCTTACCACT-TTTG---------------------------------------------------------------------TTGTGAC-TTTGCAGAACATCGAGTTCCGATTG-CGAAAGATGGAGGAATCCTCGGAGCAGATACTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGATTG-CGAAAGAT........................2011.0010100
.......GGACATCAATCAGAAGGAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
dm3
AAATCGAGGACATCAATCAGAAGGAAAACATACAAACGGCCACCGTTCAGGTGCGTAGTCATC------AC----------------T--------------------------------ACCCT--CTTCC--------CACCTGCTT------------CGACATCCA---------------TTC-CAATGCT--GTG--TTT-------GCATTTTTATGCAAATTTTC----------TGTGTGATTCGTGTTATCCGA-AGTGACATGGGTTTTGACAG---CACGATTTTACAT------------TTGAATTGAAGAT-----TGGACACGTCC-----GGATGGCCATT---T----------ACTGCAGGCGTTGCAGCTTTTCCT-----AGAACTA-----------------------------------------ACAT-------ACATGCTATGGAA--------------ATTAAATTCGGTTTCTTACCACT-TTTG---------------------------------------------------------------------TTGTGCC-TTTGCAGAACATCGAGTTCCGATTG-CGAAAGATGGAGGAATCCTCGGAGCAGATACTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................GGAAAACATACAAACGGCCACCGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TCGAGGACATCAATCAGAAGGAAAACAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-TTTG---------------------------------------------------------------------TTGTGCC-TTTGCAG...................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-CGAAAGATGGAGGAATCCTCGGAGC.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CGAAAGATGGAGGAATCCTCGGA.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................GAT-----TGGACACGTCC-----GGATGT.........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGGAATCCTCGGAGCAGATA..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGATGGAGGAATCCTC............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGGAATCCTCGGAGCAGATAC.2611.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-CGAAAGATGGAGGAATCCTCGGA.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGAGGAATCCTCGGAGC.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACT-TTTG---------------------------------------------------------------------TTGTGCC-TTTG......................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------------------------ACAT-------ACATGCTATGGAA--------------AT.................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGAATCCTCGGAGCAGATACT2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGAATCCTCGGAGCA......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCCGATTG-CGAAAGATGGA.....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TACAAACGGCCACCGTTCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGATTG-CGAAAGATGGAGGAAA................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TATCCGA-AGTGACATGGGTTTTGACAG---..........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................CGA-AGTGACATGGGTTTTGAC...............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTTCCGATTG-CGAAAGATGGAGG...................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................GTGTTATCCGA-AGTGACATGGGTTTTG.................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CAAACGGCCACCGTTCAGTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCGAGTTCCGATTG-CGAA............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACATCGAGTTCCGATTG-CGA.............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATTG-CGAAAGATGGAGGAATCCT.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGAATCCTCGGAGCAGA....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGATTG-CGAAAGATGGAGGAA.................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................AAACATACAAACGGCCACCGTTCAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CCACCGTTCAGGTGCGTAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CAAACGGCCACCGTTCAGAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTG-CGAAAGATGGAGGAATCCT.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGAGGAATCCTCGGAGCA......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGAGGAATCCTCGGAGC.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAATCCTCGGAGCAGATA..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GAGGACATCAATCAGAAGGAAAACATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ACATCAATCAGAAGGAAAACAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AGCTTTTCCT-----AGAACTA-----------------------------------------A........................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCCGATTG-CGAAAGATGG......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------ACATGCTATGGAA--------------ATTAAATTCGGT.......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGAGGAATCCTCGGAGCAG.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droEre2
AAATCGAGGACATCAATCAGAAGGAAAACATACAAACGGCCACCGTTCAGGTGTGTAGACATT------AC-----------------------------------------------GTACCCT--CATCC--------CAACTACTG------------TGACATCCA---------------TCT-GAATGCT--GTG--TTT-------GCATTTTTATGCAAATTTCC----------TGTGCGATTCGTGTTATCCGA-AGTAACATGGGTTCTGACAG---CACGACTTTGCAT------------TTGAATTGAATAT-----TGGACACGTCC-----GAATGACCATT---T----------AGTGCAGCCGTTGCAGCTTTTCCT-----ACAACTAG--------C--AT--GC-------------------AT----AT-------ACATGCTGTGGAA--------------ATTAAATTCGATTTCTTATCACT-TTTC---------------------------------------------------------------------ACGTGACTTTTGCAGAACATCGAGTTCCGATTG-CGAAAGATGGAGGAATCCTCGGAGCAGATACTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............TCAATCAGAAGGAAAACATACAAACGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
droYak3
AAATCGAGGACATCAATCAGAAGGAAAACATTCAAACGGCCACCGTTCAGGTGCGTAGACATC------AG----------------T----------------------------ACCCACCAT--CATCC--------CACCTGCTT------------CGACATTTA---------------TCC-CAATGCT--GTG--TTT-------GCATTTTTATGCAAATTTCC----------AGTGTGATTCGTGTTATCCGA-AGTAACATGGGTTCTGACAG---CACGATTTTACAT------------TTGAATTGAAAAT-----TGGACACGTCC-----GAATGACCATT---T----------ACTGCAGCCGTTGCAGCTTTTCCA-----ACAACTAT--------C--AT--GC-------------------AT----ATACGCTGAATATGCTGTGGAA--------------ATTAAATTCGATTTCTTACCACT-TTTC---------------------------------------------------------------------ATGTGTCTTTTGCAGAACATCGAGTTCCGATTG-CGAAAGATGGAGGAATCCTCGGAGCAGATACTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.AATCGAGGACATCAATCAGAAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTTCCGATTG-CGAAAGATGGA.....................2411.00100000010000
droEug1
AAATCGAGGACATCAATCAGAAGGAAAACATACAGACAGCCACCGTTCAGGTGTGTAGTCAGC------AG----------------T--------------------------------ACC-------------------CATCCTT------------TGACAT-------------------CTCAATTCACATCTG--TTG-------GCATTTTTATGCAAATATCC----------TGGGTGATTCGTGTAACCCAAAACTGACATGGGTACTGACAG---CACGTCTTTACAT------------TCGAATTGAAAAT-----TGGACACGTCC-----GAGTGACCATT---T----------ACTGCAGCCGTTGCAGCTTTTCCTTT---ACAAT---TGTTCCAGCACATAA--AAAAAAAGA--AGAAAAGAATATACAT-------ACATGCAGTGGAA--------------ATTTAATTCGATTTATCATCAGTTTTTAATTTAATATTCGAATGCCACACCAATGAATATACAAC---------------TCTGT---------TCATTGTG----TTCCAGAACATCGAGTTCCGATTG-CGGAAAATGGAGGAGTCCTCGGAGCAGATACTSizeHit CountTotal NormTotal
No Reads
droBia1
AAATCGAGGACATCAATCAGAAGGAGAACATACAGACGGCCACCGTTCAGGTGCGTAGTCAGC------AG----------------TTTGAA-----------------------C-AGACCCC--CAGCC--------CCCTTGCTT------------TGACAT-------------------CC-CAATCCT--GTGAGTTT-------GCATTTTTATGCAAATGTCC----------TGTGTGATTCGTGTTATCCAA-ACTGACATGGGTTCTGACAG---CACGTCTTAACGT------------CTGAATTGAAATT-----TGGACACGTCC-----GAATGACCATT---T----------GCTGCAGGCGCTGCAGCATTTTCTCT---GCCAT---TGTTCGA-C--AT--AC--------------------------C-------ATACGCAGTGGAA--------------ATTTAATTCGATTTATCGCCAGT-TTTAACTTG----------------------------------------------TTCTGTCTTGTTCTGT------CAC-TTTCCAGAACATCGAGTTCCGGCTG-CGAAAGATGGAGGAGTCCTCGGAGCAGATACTSizeHit CountTotal NormTotal
No Reads
droTak1
AAATCGAGGACATCAATCAGAAGGAGAACATACAAACGGCCACCGTTCAGGTGCGTTATCTTC-----------------------------------------------------------------------------CCCTTGTTT------------TGACAA------------------CCC-CAATCCT--GTG--TGT---CCTCGCATTTTTATGCAAATATCC----------TGTGTGATTCGTGTTAGCCAA-ACTGACATGGGTTCTGACAGCAGCACGTCTTAACAT------------TTGAATTGAAAAT-----TGGACACGTCC-----GACTGGCCATT---T----------ACTGCAGCCGTTGCAGCTTTCGCTCT---GCTAT---TGCTCAA-C--AT--ATA----------CAGTATATTTCCACAT-------ATATGCAGGGGAA--------------ATTTAATTCGATTTAACACCACT-TTTAATTTGATA------------------------------------------TTTCTGT---------T------CAT-TTGCCAGAACATCGAGTTCCGCCTG-CGGAAGATGGAGGAATCCTCCGAGCAGATACTSizeHit CountTotal NormTotal
No Reads
droEle1
AAATCGAGGACATCAATCAGAAGGAAAACATACAGACGGCCACCGTTCAGGTGTGTGGTAATC------AG----------------A--------------------------------GCTCCCTTCTC-CTTTTTTGCCCTTGTTTGTTTTCTTTTTGTGACAT-------------------CT-CAATCCT--GTG--TCT-------GCATTTTGATGTAAATTTTG----------TGTGTGATTCGTGTTATCCGA-AATGACATGGGTACTGACAG---CATG----------------------TGAATTGAAAAT-----TGGACACGTCC-----GAGTGACCATT---T---------CACTGCAGCCGTTGCAGATTTTTAT-----AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AAATCGAGGACATCAATCAGAAGGAAAACATACAGACGGCCACCGTTCAGGTGTGTAGTCATC------AG----------------A----------------------------CCGCCCCCT--CATC---------CCCTTGTTT------------TGACAT-------------------CT-CAATCCT--GTG--TTT-------GCATTTTTATGTAAATTTCG----------TGTGTGATTCGTGTTATCCGA-AATGACATGGGTACTGACAG---CACGTCTTGACAT------------GTGAATTGAAAAT-----TGGACACGTCC-----GAATGACCGTT---T---------TGCTGCAGGCGTTGCAGCTTTTCTTTT---ACCATCACCGTTCTGA---ATAAAT----------ATAAT----------AC-------ATATGCAATGGAATATATCCT---TCCGTTTAATTGGATTTGCCACCGTT-TCTAATTTAATAATCGAATGAAACG------------------------TTGTATTTCTTT---------A------TAT-GTTACAGAACATTGAGTTTCGGCTG-CGAAAGATGGAGGAATCCTCGGAGCAGATACTSizeHit CountTotal NormTotal
No Reads
droFic1
AAATCGAGGACATCAATCAGAAGGAGAACATACAGACGGCCACCGTTCAGGTGCGTAGTCAGC------AT----------------C--------------------------------ATCCC--CGTTT------CACCCTTGTTT------------TGACAT-------------------CT-CAATCCT--GTG--TTT-------GCATTCTCATGCAAATATTC----------CGGGCGATTCGTATTTCCCAA-ACTGACATGGGTACTGACAG---CACGTCTCCGCAT------------TTCAATTGAAAAT-----TGGACACGTCC-----GAGTGACCATT---T---------TACTGCAGCCGTTGCAGCTTTTCCTTT---ACTGCTATCGTTCAGG---ATAA--ACGAGGGGATAAAAA----------AT-------GAATTCGATGGAATATATCCT---TCCATTTAATTTGATTTGTCACCTCT-TTTAATTTAATAACCGGATGAAGCGTCGATAAAT--ACAGC-------TTTG--TGTCTGT---------T------CGT-TTTCCAGAACATTGAGTTCCGGCTG-CGGAAGATGGAGGAGTCCTCGGAGCAGATTCTSizeHit CountTotal NormTotal
No Reads
droKik1
AAATCGAGGACATCAATCAGAAGGAGAACATACAAACGGCCACCGTTCAGGTGAGTAGGTTTTTCCCCCTCCTAGCAT---------T--------------------------------TTC---------------------CTCTT------------TGACAT-------------------TTCGAATTCC--ATG--TTT-------GCGTTTTTATGCAAATTTCCCCTGTGTGAGTGTGTGATTCGTGTTTACCAA-ACTGACATGGGTTCTGACAG---CACGTCTTCGCAT------------TTGAATTGAAAAT-----TTAACACGTCC-----GAATGGTCATA---G--A-TACCAGAATGCAGCCGGTGCAGTCTTTTTTTTTATGCA---------------------------------------------ACTT-------ATATGCTTTGAGA--------------ATT-------GTTTTTTAC------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
AAATCGAGGACATCAATCAAAAGGAGAACATTCAGACCGCCACCGTTCAGGTGGGTAGCCATC------AT----------------CTGGCACTTTAGTCCTTTACTG-------CCG--CCC-------------CCACTACACTTT------------ACACA-------------------TCC-CAATCTG--GTG--TCCGGACTCCCGATTCTTATGTAAATTTCG----------TGTGTGATTCGTGTTTACCAA-GCTGACATGGGTACTGACAG---CACGTCTTCGCATTCGCATTCGTATTCGAATTGAAAAT-----TGGACACGTCC-----GGATGACCAATGTGT----------GCAGTAGCCATTGCAGGATTCCTTTT---ACGACCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................GAACATTCAGACCGCCACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droBip1
AAATCGAGGACATCAATCAAAAGGAGAACATTCAGACCGCCACCGTTCAGGTGGGTAGCCATC------AT----------------CTGGCACTTTAGTCCTTTACTGCGACAGTCCA--CCC------CC--------CATACACTT------------TAACAT-------------------CC-CAATCTG--GTG--TCC-------GGATTCTTATGTAAATTTCG----------TGTGTGATTCGTGTTTACCAA-GCTGACATGGGTACTGACAG---CACGTCTTCCCAT------------TCGAATTGAAAAT-----TGGACACGTCC-----GGATGACCAGT---G----------TGTGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AAATCGAAGACATCAATCAAAAGGAGAACATACAAACAGCTACGGTGCAGGTGCGTCTCCATC------TCCT-----ACACCCCTA--------------------------------------------CCCTCCGCACCCTAGTTC------------AGAG---CA---------------TCC-TAATCTT--TGG--TTT-------GAATCTTTATTCAAATATCT----------AATACGATTTCTGTTCCCCGC-ATTGACATGGGTATTGGCA------CG-------AA------------TGGAATTGAAAATGTCCATGGCCATGTCCATTCGGAACGTTCATTGTGCTGCTCCTCATGCTGCAGCTGGTGCACGCC------------------------------------------------------------------------TTTGACGGAAGCTTTCCTCACTCC---------------------------------------------------------------GCTGTATTGTTTG--T---------ATTCTTT------CAC-TTTATAGAACATTGAATTTCGTTTG-CGGAAGATGGAGGAGTCGTCCGAACAGATACTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................AAAGGAGAACATACAAACAGCTACGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.........................................................................................................................................................................................................................................................................................................................................CATGGCCATGTCCATTCGGAT............................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGTTTG-CGGAAGATGGAG....................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTG-CGGAAGATGGAGGAGTC...............2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................AGCTGGTGCACGCC------------------------------------------------------------------------TTTGAC.....................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATTGAATTTCGTTTG-CGGA............................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGGAGGAGTCGTCCGAAC.......2111.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGCTGGTGCACGCC------------------------------------------------------------------------TT.........................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................ATTGACATGGGTATTGGCA------CG-------...............................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............TCAATCAAAAGGAGAACATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
AAATCGAGGACATCAATCAAAAGGAGAACATACAAACAGCTACGGTGCAGGTGCGTCTCCATC------TCCT-----ACACCCCTA--------------------------------------------CCCTCCGCACCCTAGTTC------------AGAG---CA---------------TCC-TAATCTT--TGG--TTT-------GAATCTTTATTCAAATATCT----------AATACGATTTCTGTTCCCCGC-ATTGACATGGGTATTGGCA------CG-------AA------------TGGAATTGAAAATGTCCATGGCCATGTCCATTCGGAACGTTCATTGTGCTGCTCCTCATGCTGCAGCTGGTGCACGCC------------------------------------------------------------------------TTTGACGGAAGCTTTCCTCACTCC---------------------------------------------------------------GCTGTATTGTTTG--T---------ATTCTTT------CAC-TTTATAGAACATTGAATTTCGTTTG-CGGAAGATGGAGGAGTCGTCCGAACAGATACTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTG-CGGAAGATGGAGGAG.................2011.001000001
.AATCGAGGACATCAATCAAAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTTG-CGGAAGATGGA.....................1911.001000001
droWil2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGTTTCTCATTCCT-T---------------------------------------------------------------------T------CTA-TTTGCAGAACATTGAGTTCCGTTTG-CGCAAAATGGAAGAATCATCCGAACAGATACTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTG-CGCAAAATGGAAGAATC...............2211.00100100
droVir3
TTGTTGTCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTGT-------GT-GTTGCAGAACATTGAATTCCGTTTG-CGCAAAATGGAGGAATCATCGGAGCAAATACTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-CGCAAAATGGAGGAATCATCGGAGC.......2711.001010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATGGAGGAATCATCGGAGC.......2411.001000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGAGGAATCATCGGAGC.......2011.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
AAATCGAGGACATCAATCAAAAGGAGAACATACAAACGGCTACAGTACAGGTGTGTAGTACAC------AC----------------A--------------------------------CACAC--TCACA--------CACATTTAC------------TAACACACATTTACTCAGTGTTAAGCC-CACTTTT--TAG--TTT---------TTTGTTATGCAAATTCAC----------AATTTTCTCTGTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCACATTGATTTGGGTTTAACGCGCATTGACAGCCAAGTCGAAG--------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................TGTTATGCAAATTCAC----------AATT...................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCATTGACAGCCAAGTCGAA.........2211.001100000
droGri2
AAATCGAGGACATCAATCAAAAGGAGAACCTTCAAACGGCCACTGTGCAGGTGTGTGTAGCAC------A--------------------------------------------------CACCT--TTACG--------GA------T------------CTAAATCCA----TTCAACTTTTATCA-CACT-----------TT-------TT-ATTTAATGCAAATTTAC----------AATTCT-TTTCTGTTACGCAC-ATTGATTTGGGTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:08 AM