ID:

dsi_23284

 Coordinate:

2r:5613163-5613308 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.4 -39.8 -39.8

Flybase annnotation

CDS [2r_5611559_5614217_+]; exon [2r_5611523_5614773_+]

No Repeatable elements found

Sense Strand Reads

######################################################################################################################################################################################################################################################
CAACTGGACAAGTTCGAGCTGCTGCTCAGCCACAGCCTCTCCTGCACCGTGTACAAGCAGATGCTGTGCCTCTTCAACGAGGCGTTGTGCTATGGTTCCACGCTGCCCGGCTACTCCGCCTGTTTTAGAAGTGTTTGTACGACCCGGCTTAGTGTTAACGATGTCCTGCCGATGGTGGTGACTGGAGAGGAGCTAGGACATGCTGCCCGAGGAGACGTGCAAGCTGGCGCACCAGATAGTCTGCCA
**************************************************.((((.((....))))))((((((((((.(((((..(((((..(((........))).))).))..)))))))..............(((.(((((((...................))))..))).)))..))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M023
head
 M024
male body
..........................................................................CAACGAGGCGTTGTGCTA.......................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ATACGTTCAAGCTGGAGCACC............. 21 3 3 0.67 2 0 0 2 0 0 0 0 0 0 0
..............................................................................................................................................................................TTGGAGACTTGAGAGGAGCT.................................................... 20 3 4 0.50 2 0 0 0 2 0 0 0 0 0 0
...................................................................................................ACGCTGCCCGGCTAG.................................................................................................................................... 15 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................GTTGGAGACTTGAGAGGAGCT.................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................CCATGGTGGTGACGGGTGA.......................................................... 19 3 15 0.27 4 0 3 0 0 1 0 0 0 0 0
.........................................................................................................................................................................CTATGGTGGTGACGGG............................................................. 16 2 20 0.25 5 0 3 0 0 0 0 2 0 0 0
.................................................................................................................................................................................................................ACGAGACGTGCAAGCTGGT.................. 19 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................CTATGGTGGTGACGGGTGA.......................................................... 19 3 12 0.17 2 0 0 0 1 0 0 1 0 0 0
...........................................................................................................................................................................ATGGTGGTGACGGGTGACG........................................................ 19 3 20 0.15 3 0 0 0 0 0 0 0 3 0 0
....................................................................................................................................................................................ACTGGAGATGAGCTTGGA................................................ 18 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................ATACGTTCAAGCTGGAGCAC.............. 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................GTTTTATAAGTGTTTGG............................................................................................................ 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....TGGATAACTTCGAGCTG................................................................................................................................................................................................................................. 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTTGACCTGTTCAAGCTCGACGACGAGTCGGTGTCGGAGAGGACGTGGCACATGTTCGTCTACGACACGGAGAAGTTGCTCCGCAACACGATACCAAGGTGCGACGGGCCGATGAGGCGGACAAAATCTTCACAAACATGCTGGGCCGAATCACAATTGCTACAGGACGGCTACCACCACTGACCTCTCCTCGATCCTGTACGACGGGCTCCTCTGCACGTTCGACCGCGTGGTCTATCAGACGGT
**************************************************.((((.((....))))))((((((((((.(((((..(((((..(((........))).))).))..)))))))..............(((.(((((((...................))))..))).)))..))))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.........................................................................................................................................ATGTTGGGACGAATCTCAA.......................................................................................... 19 3 10 1.40 14 14 0 0 0 0 0
....................................................TGGTCGTCTACGACATGGAGAAGT.......................................................................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
.........................................................................................................................................ATGTTGGGGCGAATCTCAA.......................................................................................... 19 3 10 0.50 5 5 0 0 0 0 0
....................CGACGAGTTGGTGTCGG................................................................................................................................................................................................................. 17 1 3 0.33 1 1 0 0 0 0 0
.........................................................................................................................................ATGCAGGGGCGAATCTCAA.......................................................................................... 19 3 9 0.22 2 2 0 0 0 0 0
......................................GAGGATGTAGGACATGTTCG............................................................................................................................................................................................ 20 3 9 0.22 2 0 0 2 0 0 0
................................................................................................................................................................................................................................ACCGCGCGGTCTATC....... 15 1 10 0.20 2 0 0 0 1 0 1
......................................................TTCGTCTAGGACCCGGAG.............................................................................................................................................................................. 18 2 9 0.11 1 0 0 1 0 0 0
...............................................................................................................................................................................ACCACTGACCTCTGC........................................................ 15 1 11 0.09 1 0 0 0 1 0 0
.................................................................................................................CAGGCGTACAAAATCTT.................................................................................................................... 17 2 12 0.08 1 0 0 0 0 1 0
..............................................................................................................................................................................................................CGGTCCTTTGCACGTTCGAC.................... 20 3 14 0.07 1 1 0 0 0 0 0
............................................................................................................................................CTGGGGCGAATCTCAA.......................................................................................... 16 2 16 0.06 1 1 0 0 0 0 0
............................................................................................TCCAGGGTGCGAGGGGCC........................................................................................................................................ 18 3 20 0.05 1 0 1 0 0 0 0
............................................................................................................................................................................ACCACCTCTGTCCTCTC......................................................... 17 2 20 0.05 1 0 0 0 0 1 0
..........................................................................................................................................CGCTGGGGCGAATCTCAA.......................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0

Generated: 04/23/2015 at 07:25 PM