ID:

dsi_23283

Coordinate:

3r:10263480-10263600 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3r_10263329_10263722_+]; exon [3r_10263329_10263722_+]

Repeatable elements

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

############################################################################################################################################################################################################################# GGAAAAAGTTTGCTTGAAAAATGTGTAAAGAAAGCGGCGCCGCCGAGTGAGTGCGTGTGTGTGTTAATACATAGCTAGACGAGTGAGATGCAGCTGTTTTTCCACTCGCCTTGCTCGCACGGCCGCCGCCCTCGATAAATTGCTACTTGCTATTAACGCACAGCCCCAAAGGCAACAACAAAGTGGCGGCGTTGGCGGCTACAGCGCAGTAGCAGCGACGC ************************************************((((((((((((....)))))))((.((.(((((((((.((....)).))).)))))).)).))(((...(((....)))..)))..(((.((.....)).)))..)))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
..............TGAAAAATGTGTAAAGAAAGCGGCGC.....................................................................................................................................................................................	26	0	1	1.00	1	0	1	0	0	0	0	0
....................ATGTGTAAAGAAAGCGGCG......................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0
................................AGCGGCGCTGCAGAGTGAG..........................................................................................................................................................................	19	2	3	0.33	1	0	0	0	1	0	0	0
.........................................................................GCTACACGAGTGAGA.....................................................................................................................................	15	1	5	0.20	1	0	0	1	0	0	0	0
.......................................................................AAGCTACACGAGTGAGA.....................................................................................................................................	17	2	7	0.14	1	0	0	1	0	0	0	0
................................................................................TAGTGAGAAGCAGCTGTATTT........................................................................................................................	21	3	8	0.13	1	0	0	0	0	1	0	0
............................AGAAAGCGGGGCCGC..................................................................................................................................................................................	15	1	8	0.13	1	0	0	0	0	0	0	1
.........................................GCCTAGTAAGTGCGTGT...................................................................................................................................................................	17	2	8	0.13	1	0	0	0	0	0	1	0
....................................................................................................................................................................................AAGTGGCCGCGTTGG..........................	15	1	12	0.08	1	0	0	1	0	0	0	0
..TAAAAATTTGCTTGAAAAATGTT....................................................................................................................................................................................................	23	3	13	0.08	1	0	0	1	0	0	0	0

Anti-sense strand reads

CCTTTTTCAAACGAACTTTTTACACATTTCTTTCGCCGCGGCGGCTCACTCACGCACACACACAATTATGTATCGATCTGCTCACTCTACGTCGACAAAAAGGTGAGCGGAACGAGCGTGCCGGCGGCGGGAGCTATTTAACGATGAACGATAATTGCGTGTCGGGGTTTCCGTTGTTGTTTCACCGCCGCAACCGCCGATGTCGCGTCATCGTCGCTGCG ************************************************((((((((((((....)))))))((.((.(((((((((.((....)).))).)))))).)).))(((...(((....)))..)))..(((.((.....)).)))..)))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR902009 testis
................................................................................................................................................................GCCGGAGGTTCCGTTGTTGTTT.......................................	22	3	4	0.25	1	1	0
...............................................................................................CAACAAGGTGATAGGAACGAG.........................................................................................................	21	3	6	0.17	1	0	1
.............................................................................................................................................................................................................CGTCATCATCGCTGC.	15	1	10	0.10	1	1	0

Generated: 04/24/2015 at 10:40 AM