ID:

dsi_23267

 Coordinate:

2r:4820482-4820536 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-1.3 -1.3 -1.3

Flybase annnotation

exon [2r_4820405_4820481_-]; CDS [2r_4820405_4820481_-]; CDS [2r_4820537_4821374_-]; exon [2r_4820537_4821374_-]; intron [2r_4820482_4820536_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------##################################################
CAAATCGGCGTTAACCAGGCCAAAGATTCCGCCACCAGGACCGCCATCAGGTGAGTGTCTTACCAGCCAACTAAATTCCAGTTTTTTTAATATTTTGATCGACAGAGCGCGAAATATCAAACGGACAGTCGAACGAGAGCATCAGTTCCATGGAC
**************************************************(((((...)))))..........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...................................................................................................................ATCAAACGGACAGTCGAACGAGAGC............... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................CGGACAGTCGAACGAGAG................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................CAAACGGACAGTCGAACGAGAGCATC............ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................CGGACAGTCGAACGAGAGCATCA........... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................GCGCGAAATATCAAACGGACAGT.......................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................GCGAAATATCAAACGGACAGT.......................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................ATCAAACGGACAGTCGAACGAGA................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................CAAACGGACAGTCGAACGAGAGC............... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................ATATCAAACGGACAGTCGAACGAGA................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................TTTTTTTAATATTTTGATCGACAG.................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................CGGACAGTCGAACGAGAGCATCAG.......... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................TATCAAACGGACAGTCGAAC..................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................ATCAAACGGACATTCGAACGAGAGC............... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................AAACGGACAGTCGAACGAGAGC............... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................CGAAATATCAAACGGACAGTCGAACG.................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................AACGGACAGTCGAACGAGA................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................GCTATATTTTGATCGACAGAGC............................................... 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0
.........................................................................................................................CGGACAGTCGAACGA................... 15 0 2 0.50 1 0 0 0 0 1 0 0 0 0
.......GCGTTAACAATGCGAAAGATT............................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 1 0 0
...........................................................................TTCCAGTTTTTTTAAAA............................................................... 17 1 6 0.17 1 0 0 0 0 0 0 0 1 0
...ATCGGCGTTGACCGGGC....................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTTTAGCCGCAATTGGTCCGGTTTCTAAGGCGGTGGTCCTGGCGGTAGTCCACTCACAGAATGGTCGGTTGATTTAAGGTCAAAAAAATTATAAAACTAGCTGTCTCGCGCTTTATAGTTTGCCTGTCAGCTTGCTCTCGTAGTCAAGGTACCTG
**************************************************(((((...)))))..........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
.........................TAAGGCGGTGGACCTG.................................................................................................................. 16 1 4 0.50 2 1 1 0 0 0
..........................AAGGCGGTGGACCTG.................................................................................................................. 15 1 13 0.23 3 3 0 0 0 0
.........................TAAAGCGATGGTCCTGG................................................................................................................. 17 2 8 0.13 1 0 0 0 1 0
................................................TCGACTCACACAATGGT.......................................................................................... 17 2 11 0.09 1 1 0 0 0 0
.................................................CCACTCCGAGAATGGTCGA....................................................................................... 19 3 13 0.08 1 0 0 1 0 0
..........................AAGGCGGTGGTCCCG.................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1
............................................GTAGGCCACTCATAGAAG............................................................................................. 18 3 20 0.05 1 0 0 1 0 0

Generated: 04/23/2015 at 06:13 AM