ID:

dsi_23254

Coordinate:

3r:4409874-4410023 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-20.4	-19.8	-19.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTCACAACAAACCAATCAAAATGAGTTCCGCTGAGTACTACCCATTCAAGGTGAGTTTACAATGGATTGTACTTTATGAATCGAAAATGTATATATCTATCAAAGTCCATTATTTCGCGCGATTAGTGCTGTTAATGTAAAAAATCAGATCAAATCAGATTCAACAGATAGATGAGAATATCTTAATATTATTTTTTCTAAAATGTGTGTTGTTGCCAAGTAAGCAAGATTTTTCTACATGCAATCTATA ************************************************..((.(((...(((((((((((................))))).)))))).))).))(((((....((((.....))))...))))).....((((.(((...))).)))).......((((.(((((((.........)))))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M023 head	M024 male body	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
..............................................................................AATCGAAAATGTATATATC.........................................................................................................................................................	19	0	1	2.00	2	0	2	0	0	0	0	0	0
..........................TCCGCTGAGTACTACCCATTCAAGTGCA....................................................................................................................................................................................................	28	3	1	1.00	1	1	0	0	0	0	0	0	0
.....................TGAGTTCCGCTGAGTACTACCCATT............................................................................................................................................................................................................	25	0	1	1.00	1	0	0	0	0	1	0	0	0
......................GAGTTCCGCTGAGTACTACCCATT............................................................................................................................................................................................................	24	0	1	1.00	1	0	0	0	1	0	0	0	0
.......................AGTTCCGCTGAGTACTAC.................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................TGCCAAGTAAGCAAGATTTTTCTAGA...........	26	1	1	1.00	1	1	0	0	0	0	0	0	0
................TAAAATGAGTTCCGCTGAGTACTACCC...............................................................................................................................................................................................................	27	1	1	1.00	1	0	0	0	1	0	0	0	0
........................GTTCCGCTGAGTACTACCC...............................................................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0
........................................................................................................................GATTAGTGCAGTTAATG.................................................................................................................	17	1	4	0.25	1	0	0	0	0	0	1	0	0
....................................ACTACCCATGCAAGG.......................................................................................................................................................................................................	15	1	5	0.20	1	1	0	0	0	0	0	0	0
...........................................................................................................................TAGTGCTGTAGATGTATAAA...........................................................................................................	20	3	9	0.11	1	0	0	0	0	1	0	0	0
.....................................................................................................................................................TCCAATAAGATTTAACAGATA................................................................................	21	3	11	0.09	1	0	0	0	0	1	0	0	0
....................................ACTACCCTTTCACGGT......................................................................................................................................................................................................	16	2	12	0.08	1	0	0	0	0	0	0	1	0
.......................................ACCCTTTCACGGTGAG...................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	1	0
.....................................CTACCCTTTCAAGGTA.....................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1

Anti-sense strand reads

AAGTGTTGTTTGGTTAGTTTTACTCAAGGCGACTCATGATGGGTAAGTTCCACTCAAATGTTACCTAACATGAAATACTTAGCTTTTACATATATAGATAGTTTCAGGTAATAAAGCGCGCTAATCACGACAATTACATTTTTTAGTCTAGTTTAGTCTAAGTTGTCTATCTACTCTTATAGAATTATAATAAAAAAGATTTTACACACAACAACGGTTCATTCGTTCTAAAAAGATGTACGTTAGATAT ************************************************..((.(((...(((((((((((................))))).)))))).))).))(((((....((((.....))))...))))).....((((.(((...))).)))).......((((.(((((((.........)))))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M024 male body
............................................................................................................................................TTTTAGTGTAGTTTAGGCTAAGT.......................................................................................	23	2	2	0.50	1	1	0	0	0	0
........................................................................................................................................................TTAGTCTGAGTTGTCTA.................................................................................	17	1	3	0.33	1	1	0	0	0	0
...................................................................................................................GCTCGCTAATCATGACCATT...................................................................................................................	20	3	3	0.33	1	0	0	1	0	0
.................................................CTACTCAAATGTTACCT........................................................................................................................................................................................	17	1	4	0.25	1	0	0	0	1	0
.........................................................................................................................................................................................................................................AGATGTAGGCTAGATA.	16	2	20	0.25	5	0	5	0	0	0
........................................................................................................................................................................................................................................AAGATGTAGGCTAGATA.	17	2	12	0.17	2	0	2	0	0	0
...................................................................................................................GCTCGCTAATCATGACAGT....................................................................................................................	19	3	6	0.17	1	0	0	1	0	0
AAGTGTTGTTTGGATTGTT.......................................................................................................................................................................................................................................	19	2	8	0.13	1	0	1	0	0	0
..................................................................................................................AGCTCGCTAATCATGACCA.....................................................................................................................	19	3	14	0.07	1	0	0	1	0	0
...........................GGCGTCTCATGATTGGTGA............................................................................................................................................................................................................	19	3	17	0.06	1	0	0	0	0	1
........................................................................................................................................................................................................................................AAGATGTAGGCTAGAT..	16	2	20	0.05	1	0	1	0	0	0

Generated: 04/24/2015 at 06:14 AM