ID:

dsi_23252

 Coordinate:

3l:11427394-11427543 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-20.2 -20.1 -20.0

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. 2r:1423595-1423609 +
  2. 2r:21511399-21511413 -
  3. dsi_23252  3l:11427487-11427501 +
  4. x:8748892-8748906 +
  5. node_78502:99-113 -
  6. node_36907:1142-1156 -
  7. dsi_10378  node_93287:6114-6128 +
star

Sense Strand Reads

CTGAATTAACTTCAAATACTTATTTTGCCGATATGCACTATATGTTTCGTCTACTCATAAAGACGGAGCAATTCGACCTTCCCACCAATCGAATATGGAAGTTACTAATGCAATACAAAATGGTAAGAGTTCCTTTTTAATGTTTTTTTTATGAAATCAAAATGATAAGTAAAACTTTGTTATCGTTTATTTAATCCTAGTCTTCAATCAAATCTTTGGACACCGAGATAGAAGAGCTTATAAATGTTTT
**************************************************....(((((((((..(((((((((((............))))))..((((.((((((.((.....))...))))))...)))).......)))))))))))))).....(((((((((...........)))))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
..............................................................................................................................................................................................................ATTAAATCTTTGGATACCG......................... 19 2 1 231.00 231 102 74 54 0 0 0 0 0 1 0
.............................................................................................................................................................................................................TATTAAATCTTTGGATACCG......................... 20 3 14 47.79 669 314 287 66 0 0 0 0 2 0 0
...............................................................................................................................................................................................................TTAAATCTTTGGATACCG......................... 18 2 3 29.33 88 28 36 23 0 0 0 0 1 0 0
..............................................................................................................................................................................................................ATTAAATCTTTGGATACC.......................... 18 2 11 18.45 203 28 66 74 0 0 16 1 9 1 8
..................................................................................................................................................................................GTTATCGTTTATTTGAT....................................................... 17 1 5 2.60 13 0 0 0 10 0 0 3 0 0 0
............................................................................................................................................................................................................CTATTAAATCTTTGGATACCG......................... 21 3 1 2.00 2 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AATTAAATCTTTGGATACCG......................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................TACTCATAAAGACGGATCAATTCGAC............................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................TCTTTGGACACCGAGATAGAAGAGCTTA.......... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................TTATCGTTTATTTGAT....................................................... 16 1 20 0.90 18 0 0 0 12 0 0 5 0 0 1
......................................................................................................................................TTTTAATGTTTGTTGTATGGA............................................................................................... 21 3 19 0.89 17 0 0 0 3 1 12 0 0 0 1
...................................................................................................................................................................................TTATCGTTTATTTGA........................................................ 15 1 20 0.80 16 0 0 0 14 0 0 1 0 0 1
..................................................................................................................................................................................GTTATCGTTTATTTGA........................................................ 16 1 14 0.71 10 0 0 0 7 0 1 0 0 0 2
..........................................................................................................................GTAATAGTTCCTTTTTAA.............................................................................................................. 18 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................TATTAAATCTTTGGACACCA......................... 20 3 18 0.39 7 3 2 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................TTAAATCTTTGGACACCA......................... 18 2 12 0.33 4 0 3 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATCAAATCTTTGGATACCA......................... 19 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATTAAATCTTTGGACACCA......................... 19 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................TTAATGTTTTTTTAATGAATT............................................................................................. 21 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................TTTTTTTATGAAATC............................................................................................ 15 0 7 0.14 1 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................AATTAAATCTTTGGATACCAA........................ 21 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................GTTATCGTTTATTTGATAGT.................................................... 20 3 20 0.10 2 0 0 0 0 0 0 0 1 1 0
......................................................................................................................................................ATGATATCAAGATGATAA.................................................................................. 18 2 11 0.09 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................ATTAAATCTTTGGAAACC.......................... 18 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0
.........................................................GAAAGACGGACCACTTCGA.............................................................................................................................................................................. 19 3 19 0.05 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................GTTAAATCTTTGGATACCG......................... 19 3 19 0.05 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................AAATCAAAATGATAAGAAGAAA........................................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................GTTATCGTTTATTTG......................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................ATCAAATCTTTGAACGC........................... 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................TCAATCTGATCTTTGGA.............................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GACTTAATTGAAGTTTATGAATAAAACGGCTATACGTGATATACAAAGCAGATGAGTATTTCTGCCTCGTTAAGCTGGAAGGGTGGTTAGCTTATACCTTCAATGATTACGTTATGTTTTACCATTCTCAAGGAAAAATTACAAAAAAAATACTTTAGTTTTACTATTCATTTTGAAACAATAGCAAATAAATTAGGATCAGAAGTTAGTTTAGAAACCTGTGGCTCTATCTTCTCGAATATTTACAAAA
**************************************************....(((((((((..(((((((((((............))))))..((((.((((((.((.....))...))))))...)))).......)))))))))))))).....(((((((((...........)))))))))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.....................................................................................GTTAGCGTATACATTCGATGAT............................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................AATGATTACCTCATGTTGTACC............................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................ATCAGAAGTTAGTTA...................................... 15 1 9 0.44 4 0 0 0 2 0 1 1
...............TATGAAGAAACCGGCTATA........................................................................................................................................................................................................................ 19 2 3 0.33 1 0 0 1 0 0 0 0
.....................................................................................................AATGATTACCTCATGTTGTAC................................................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................................................................................CAAATAGATTAGGATCAAAA.............................................. 20 2 4 0.25 1 0 0 1 0 0 0 0
.......................................................................................................................................................TCTTTAGTTTTACCCTTCATTTT............................................................................ 23 3 7 0.14 1 0 0 0 0 1 0 0
......................................................................................................ATGATTACCTCATGTTGTAC................................................................................................................................ 20 3 7 0.14 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................ATAGAGAGCTGTGGCTCTA..................... 19 3 11 0.09 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................TCAGAAGTTAGTCAAGAA.................................. 18 2 12 0.08 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAAACTTGTGGCTCTA..................... 16 2 20 0.05 1 1 0 0 0 0 0 0

Generated: 04/24/2015 at 08:00 AM