dsi_23243

TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTGGGGTGGGCACACATGGAGTTCGAGTTGGAGTTGGAGATGGAGATGGGTAGCCAGAGCAGGCGGTAGTCCTGCTCCGGGCAGGGACCATGAAATGTGTGTGTATACCGGCAGGGGACGACCGAAAATTAAGAATTATAAAAGATTGGATGGGGCAGCCAGCAGTCCAGAGAGTCAGAGAGCAACCCGGAGA ************************************************.......((.(((((.((((((((...((((..((((((((.(((..............(((......))).....))).))))).)))..))))......)))))))).))).)).)).((......))....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR902008 ovaries	SRR553486 Makindu_3 day-old ovaries
.........................................................................................................................................GCAGGGACCATGAAATGTGTG............................................................................................	21	0	1	1.00	1	1	0	0	0	0
...........ATCGAGGTCGAGCAATTGGTG..........................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................ATAAAAGATTGGATGGCGCT....................................	20	2	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................ATACCGGCAGGGGACGACCGAA...................................................................	22	0	1	1.00	1	0	0	0	1	0
...........................TGGTGGCGAGGAAGCCGGGAA..........................................................................................................................................................................................................	21	3	5	0.80	4	0	4	0	0	0
...........................................................................................................................................................................................................................................AGAGCAACCCGGGGA	15	1	6	0.17	1	0	0	0	0	1
...................................................................................................................................................................ACCGGCATGTGACGACC......................................................................	17	2	7	0.14	1	1	0	0	0	0
...........................TGGTGGCGAGGAAGCCGGGA...........................................................................................................................................................................................................	20	3	8	0.13	1	0	1	0	0	0
...................................................................................................................................................................................................TAAAAGAATGGATGCGGC.....................................	18	2	9	0.11	1	0	1	0	0	0
.....................................................................................................................................................TAATGTGTGTGTATA......................................................................................	15	1	20	0.05	1	1	0	0	0	0

ACAGCCTGCCGTAGCTCCAGCTCGTTAACCACCTCTCGTTCGGCTCTTCCCACTCATCACCCCACCCGTGTGTACCTCAAGCTCAACCTCAACCTCTACCTCTACCCATCGGTCTCGTCCGCCATCAGGACGAGGCCCGTCCCTGGTACTTTACACACACATATGGCCGTCCCCTGCTGGCTTTTAATTCTTAATATTTTCTAACCTACCCCGTCGGTCGTCAGGTCTCTCAGTCTCTCGTTGGGCCTCT ************************************************.......((.(((((.((((((((...((((..((((((((.(((..............(((......))).....))).))))).)))..))))......)))))))).))).)).)).((......))....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M024 male body	GSM343915 embryo
.....................................................................................................................................................................GCCGTCGCCTGCTGGCTT...................................................................	18	1	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................CCAGGTCTCTCAGTATCT............	18	2	2	1.00	2	0	2	0	0	0
..............................................................................................................................AGGACAACGCCCGTCCCT..........................................................................................................	18	2	4	0.25	1	0	0	1	0	0
...............................CGTCACGTTCGGCTCTTC.........................................................................................................................................................................................................	18	2	5	0.20	1	0	0	1	0	0
....................................................................TGTGTACCTCAAGGT.......................................................................................................................................................................	15	1	6	0.17	1	1	0	0	0	0
....................................................................TGTGTACCTCAAGGTGAA....................................................................................................................................................................	18	2	8	0.13	1	0	0	0	1	0
............................................................................TCAAGCTCACCCTCCACCTCAAC.......................................................................................................................................................	23	3	10	0.10	1	0	0	0	0	1
..............................................................................................................................AGGCCGTGGCCCGTCC............................................................................................................	16	2	20	0.05	1	0	1	0	0	0
.......................................TCGGCTTTTCCCACT....................................................................................................................................................................................................	15	1	20	0.05	1	0	0	1	0	0
............................................................................................................................TCAGAGCGAGGCCCG...............................................................................................................	15	2	20	0.05	1	0	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	node_39788:161823-162072 +	dsi_23243	TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTGGGG--TG----------------------------G---------------------GCACACA----TGGAGTTCGAGTTGGAGTTG------------GAGATGGA-------------------GA---------------------------------------TGGGTAGCCAGAGCA-GG--CGGTAGTCCTG--CTCCGGGCAGGGACCATG-AAATGTGTGTGTATAC------C-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGGG-G------------CAGCCAGC-------AGTCCAGAGAGTCA--GAGAGCAACCCGGAGA----
droSec2	scaffold_8:968259-968496 +		TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGAGCAAGCCAAGAAGGGTGAGTAGTGGGG--TG----------------------------G---------------------GCACACA----TGGAGTTCGAGTTGG------------------------A-------------------GA---------------------------------------TGGGTAGCCAGAGCA-GG--CGGTAGTCCTG--CTCCGGGCAGGGACCATG-AAATGTGTGTGTATAC------C-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGGG-G------------CAGCCAGC-------AGTCCAGAGAGTCA--GAGAGCAGGCCGGAGA----
dm3	chrX:18669613-18669856 +		TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTGGGGAGTG----------------------------G----------------GTTGGGCACACA----TGGAGTTCGAGTTGGAGTTG------------GAGATGGA------------------------------------------------------------TGG-----------A---GTCGGTAGTCCTG--CTCCGGGCAGGGACCATG-AAATGTGTGTGTATAC------C-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGGG-G------------CAGCCAGA-------AGTCCAGAGAGTCA--GAGAGCAGGCCGGAGA----
droEre2	scaffold_4690:8968853-8969089 +		TGTCGGACGGCATCGAGGTCGAGCAGTTGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTGGGG--TG----------------------------G---------------------GCACACA----TGGAGTTCCAGTTGGAGCGG------------C-----------------------------------------------------------------AGTGGGTAGCCAGAGCA-GGGTCGGTAGTCCTG--CTCCGGGCAGGGTCCATG-AAATGTGTGTGTATAC------A-------------------------GGCAGGGGAC----GACCGAAAATTAAGAGTTATAAAAGATTGGATGGG-G------------CAG--------------TCCAGAGAGTCA--GAGAGC-GGCCGGAGA----
droYak3	X:17291417-17291654 +		TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTGGGG--TG----------------------------G---------------------GCACACA----TGGACTTCCAGTTGGAGTTGAAGTTGAAGTTGGAGTTGGA-------------------GT---------------------------------------TGG------------------AGTAGTCCTG--CTGCGGGCAGGGTCCATG-AAATGTGTGTGTATAC-----------------------------------AGGGGAC----GACCGAAAATTAAGAATTATAAAACATTGGATGGG-G------------CAGCCAGCAGCCAGCAGTCCAGAGAGTCA--GAG------------A----
droEug1	scf7180000409458:149115-149363 -		TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTAAG-AATG----------------------------G----------------GATGGGTAAGCAGTATCGGAGT--------GAG-------------------T-----------------------------------------------------GGTCGGGTAGTTGGT---------A---GTCTGTAGTCCTG--CTT----CAGGGTCCATG-AAATGTGTGTGTATACACATGCA-------------------------GACAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGGG-TATGGAGGGGGGCCAGC--------------CAAGAGATTCA--GAGAGCAGGCCAGAAA---A
droBia1	scf7180000302432:517442-517687 -		TGTCGGACGGCATCGAGGTCGAGCAGTTGGTGGAGAGCAAGCCGAGGAGGGTGAGTAGTGGGG--TG----------------------------G---------------------GCAG---------------------G------------------AGATGGTCGGGAGTCGGGAGTCGGGAGT-------------------C-GGGAG--TCGG----CCG----TCGCC-----G---GTCGGCAGTCCTG--CTC----CAGGGTCCACG-AAATGTGTGTGTATAC------C-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGGG-G------------CAGGCAGA-------GGCCCAGAGAGCCG--GAGCGCAGGCCACAAA----
droTak1	scf7180000414217:44375-44565 +		TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTGGGG--TG----------------------------A---------------------GTA---------------------------------------------------------------------------------------------------GA----CGGTCGGT---------A---GTCGGTAGTCCTG--CTC----CAGGGTCCACG-AACTGTGTGTGTATAC------A-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGG-------------------------------------AGAGCCG--GAGAGCAGGCCAGAGA----
droEle1	scf7180000491006:939515-939744 +		TGTCGGACGGCATCGAGGTCGAGCAAATGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTGGAG--TG----------------------------G---------------------GTA--------------------------------------------TGGG-------------------TATGGGTATAGCTATGGCTATAT--GAGTATGGTATGGTA--TGGT---------ATGG--TATGGGTCCTG--CTC----CAGGGTCCACG-AAATGTGTGTGTATAC------A-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGGGGG------------CAGACAG-------------------------AGAGCCAGCCAGAGA----
droRho1	scf7180000779985:1413569-1413755 +		TGTCGGACGGCATCGAGGTCGAGCAAATGGTGGAGAGCAAGCCGAGGAGGGTGAGTAGTGGGG--TG----------------------------G---------------------GCA--------TG--------------------------------------------------------------------------------------------------------------------------GGTCCTG--CTC----CAGGGTCCACG-AAATGTGTGTGTATAC------A-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGGG-G------------CAGCCAG---------------AGAGCCACGGAGAGCAGACCAGAGA----
droFic1	scf7180000453829:40282-40521 -		TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGACCAAGCCAAGAAGGGTGAGTAAAGGGG--CG----------------------------AAGGGGGAAGAGGGAGGGAGG-GGGAAGA----AGAAGAAG------------------------AAGGGGGA-------------------AA---------------------------------------GGGGTAGGGGGAAGG-GG--TAGGAGTCCTGCGCTC----CAGGGTCCACG-AAATGTGTGTGTATAC------G-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTACAAAAGATCGAATGGG-G------------CAGACTGA------GAGACCAGAGAGC----------A-------------
droKik1	scf7180000302685:580245-580301 -		TGTCGGACGGCATTGAGGTCGAGCAAATTGTGGAGAGCAAGCCGCGCAGGGTGAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13047:1087703-1087758 -		TGTCGGACGGTATCGAGGTCGAGCAGATAGTGGAGAGCAAGCCGAGGAGGGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396575:342168-342223 +		TGTCGGACGGCATCGAGGTCGAGCAGATAGTGGAGAGCAAGCCGAGGAGGGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	XL_group3a:554700-554958 -		TGTCGGACGGCCTCGAGGTTGAGCAGATCGTGGAGAGCAAGCCGAGAAGGGTGAGTACTCGT-AGTCCTCCGGGGCGCTATATTTTATATATTTAC----------------A-----TA--------------------------------------------TGTA-------------------CATGCATACACACATACATACAT--AAGTA----------------------------------------------------------CATGTGCATGTGTATGCATAC------AGAATACAGAAAGTAATAAGTGCGGCGGCAAAAGACAACCAACCGAAAATTAAGAATTATAAAAGATTCGATGGG-G------------AAACAAA---------------AGAGCAAAAGAAACGGGGCAACAGA----
droPer2	scaffold_39:102796-103058 -		TGTCGGACGGCATCGAGGTTGAGCAGATCGTGGAGAGCAAGCCGAGAAGGGTGAGTACTCGT-AGTCCTCCAGGGCGCTATATTTTATATATTTAC----------------A-----TA--------------------------------------------TGTA-------------------CATACATCCACACATACATATGT--AAGTA----------------------------------------------------------CATGTGCATGTGGATGCATAC------AGTATACAGAAAGTAATAAGTGCGGCGGCAACAGACAACCAACCGAAAATTAAGAATTATAAAAGATTCGATGGG-G------------AAACAAA---------------AGAGCAAAAGAAACGGGGCAACAGAGACA
droWil2	scf2_1100000004909:11362197-11362253 +		TGTCAGACGGCATTGAAGTTGAACAAATCGTGGAGAGCAAGCCCAGAAGGGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12472:746513-746567 -		TGTCAGACGGCATTGAAGTTGAACAAATTGTGGAGAGCAAACCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6308:2683862-2683916 +		TGTCAGACGGCATTGAAGTTGAACAAATTGTGGAGAGCAAGCCGAAAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15203:3856713-3856767 +		TGTCAGACGGCATTGAAGTTGAACAAATTGTGGAGACCAAGCCAAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTGGGG--TG----------------------------G---------------------GCACACA----TGGAGTTCGAGTTGGAGTTG------------GAGATGGA-------------------GA---------------------------------------TGGGTAGCCAGAGCA-GG--CGGTAGTCCTG--CTCCGGGCAGGGACCATG-AAATGTGTGTGTATAC------C-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGGG-G------------CAGCCAGC-------AGTCCAGAGAGTCA--GAGAGCAACCCGGAGA----	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................GCAGGGACCATG-AAATGTGTG.........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........ATCGAGGTCGAGCAATTGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................ATAC------C-------------------------GGCAGGGGAC----GACCGAA.............................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGAGCAAGCCAAGAAGGGTGAGTAGTGGGG--TG----------------------------G---------------------GCACACA----TGGAGTTCGAGTTGG------------------------A-------------------GA---------------------------------------TGGGTAGCCAGAGCA-GG--CGGTAGTCCTG--CTCCGGGCAGGGACCATG-AAATGTGTGTGTATAC------C-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGGG-G------------CAGCCAGC-------AGTCCAGAGAGTCA--GAGAGCAGGCCGGAGA----	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............CGAGGTCGAGCAATTGGTGGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
...............................................AGGGTGAGTAGTGGGG--TG----------------------------...........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
.........................ATTGGTGGAGAGCAAGCCAAG............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
............TCGAGGTCGAGCAATTGGTGGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
...........ATCGAGGTCGAGCAATTGGTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
.............CGAGGTCGAGCAATTGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0

dm3

TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTGGGGAGTG----------------------------G----------------GTTGGGCACACA----TGGAGTTCGAGTTGGAGTTG------------GAGATGGA------------------------------------------------------------TGG-----------A---GTCGGTAGTCCTG--CTCCGGGCAGGGACCATG-AAATGTGTGTGTATAC------C-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGGG-G------------CAGCCAGA-------AGTCCAGAGAGTCA--GAGAGCAGGCCGGAGA----	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................TTGGTGGAGAGCAAGCCGAGAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	0	0	0	0
...........................TGGTGGAGAGCAAGCCGAGAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...........ATCGAGGTCGAGCAATTGGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...........ATCGAGGTCGAGCAATTGGTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................AATTGGTGGAGAGCAAGC................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.........................ATTGGTGGAGAGCAAGCCGAGAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CAATTGGTGGAGAGCAAGCCGAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0
.................GTCGAGCAATTGGTGGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
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......................................................................................................................................................................................................................................................................................................................................................................................................................AGTCCAGAGAGTCA--GAGAGCAGGCCG........	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................................................................................A-------AGTCCAGAGAGTCA--GAG.................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................CAATTGGTGGAGAGCAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................AGTTG------------GAGATGGA------------------------------------------------------------TGG-----------A---GTCG................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CGAGGTCGAGCAATTGGTGGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
........................AATTGGTGGAGAGCAAGCCGAGAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................GCAATTGGTGGAGAGCAAGC................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GTAGTGGGGAGTG----------------------------G----------------GTTGGG....................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................GTGGAGAGCAAGCCGAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GCAAGCCGAGAAGGGTGAGTAGTG..............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AGCAATTGGTGGAGAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................A-------AGTCCAGAGAGTCA--GAGAGCAGG...........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TGTCGGACGGCATCGAGGTCGAGCAGTTGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTGGGG--TG----------------------------G---------------------GCACACA----TGGAGTTCCAGTTGGAGCGG------------C-----------------------------------------------------------------AGTGGGTAGCCAGAGCA-GGGTCGGTAGTCCTG--CTCCGGGCAGGGTCCATG-AAATGTGTGTGTATAC------A-------------------------GGCAGGGGAC----GACCGAAAATTAAGAGTTATAAAAGATTGGATGGG-G------------CAG--------------TCCAGAGAGTCA--GAGAGC-GGCCGGAGA----	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................GGTCGAGCAGTTGGTGGAGAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	23.00	23	0	0	0	0	0	0	23
........GGCATCGAGGTCGAGCAGTTGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	3
.........................GTTGGTGGAGAGCAAGCCGA.............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
............TCGAGGTCGAGCAGTTGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...........ATCGAGGTCGAGCAGTTGGTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.........................GTTGGTGGAGAGCAAGCCGAGAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................A----TGGAGTTCCAGTTGGAGCGG------------..........................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...................CGAGCAGTTGGTGGAGAGCAAGC................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0

droYak3

TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTGGGG--TG----------------------------G---------------------GCACACA----TGGACTTCCAGTTGGAGTTGAAGTTGAAGTTGGAGTTGGA-------------------GT---------------------------------------TGG------------------AGTAGTCCTG--CTGCGGGCAGGGTCCATG-AAATGTGTGTGTATAC-----------------------------------AGGGGAC----GACCGAAAATTAAGAATTATAAAACATTGGATGGG-G------------CAGCCAGCAGCCAGCAGTCCAGAGAGTCA--GAG------------A----	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................GGTGGAGAGCAAGCCGAGAAGGGT......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........ATCGAGGTCGAGCAATTGGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................GAGCAATTGGTGGAGAGCAAGC................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................GTCCATG-AAATGTGTGTGT......................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................CGAGCAATTGGTGGAGAGCAAGCC...............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................ATTGGTGGAGAGCAAGCCGAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................TGGTGGAGAGCAAGCCGAGAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........ATCGAGGTCGAGCAATTGGTGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTAAG-AATG----------------------------G----------------GATGGGTAAGCAGTATCGGAGT--------GAG-------------------T-----------------------------------------------------GGTCGGGTAGTTGGT---------A---GTCTGTAGTCCTG--CTT----CAGGGTCCATG-AAATGTGTGTGTATACACATGCA-------------------------GACAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGGG-TATGGAGGGGGGCCAGC--------------CAAGAGATTCA--GAGAGCAGGCCAGAAA---A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGTCGGACGGCATCGAGGTCGAGCAGTTGGTGGAGAGCAAGCCGAGGAGGGTGAGTAGTGGGG--TG----------------------------G---------------------GCAG---------------------G------------------AGATGGTCGGGAGTCGGGAGTCGGGAGT-------------------C-GGGAG--TCGG----CCG----TCGCC-----G---GTCGGCAGTCCTG--CTC----CAGGGTCCACG-AAATGTGTGTGTATAC------C-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGGG-G------------CAGGCAGA-------GGCCCAGAGAGCCG--GAGCGCAGGCCACAAA----	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTGGGG--TG----------------------------A---------------------GTA---------------------------------------------------------------------------------------------------GA----CGGTCGGT---------A---GTCGGTAGTCCTG--CTC----CAGGGTCCACG-AACTGTGTGTGTATAC------A-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGG-------------------------------------AGAGCCG--GAGAGCAGGCCAGAGA----	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGTCGGACGGCATCGAGGTCGAGCAAATGGTGGAGAGCAAGCCGAGAAGGGTGAGTAGTGGAG--TG----------------------------G---------------------GTA--------------------------------------------TGGG-------------------TATGGGTATAGCTATGGCTATAT--GAGTATGGTATGGTA--TGGT---------ATGG--TATGGGTCCTG--CTC----CAGGGTCCACG-AAATGTGTGTGTATAC------A-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGGGGG------------CAGACAG-------------------------AGAGCCAGCCAGAGA----	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGTCGGACGGCATCGAGGTCGAGCAAATGGTGGAGAGCAAGCCGAGGAGGGTGAGTAGTGGGG--TG----------------------------G---------------------GCA--------TG--------------------------------------------------------------------------------------------------------------------------GGTCCTG--CTC----CAGGGTCCACG-AAATGTGTGTGTATAC------A-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTATAAAAGATTGGATGGG-G------------CAGCCAG---------------AGAGCCACGGAGAGCAGACCAGAGA----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGTCGGACGGCATCGAGGTCGAGCAATTGGTGGAGACCAAGCCAAGAAGGGTGAGTAAAGGGG--CG----------------------------AAGGGGGAAGAGGGAGGGAGG-GGGAAGA----AGAAGAAG------------------------AAGGGGGA-------------------AA---------------------------------------GGGGTAGGGGGAAGG-GG--TAGGAGTCCTGCGCTC----CAGGGTCCACG-AAATGTGTGTGTATAC------G-------------------------GGCAGGGGAC----GACCGAAAATTAAGAATTACAAAAGATCGAATGGG-G------------CAGACTGA------GAGACCAGAGAGC----------A-------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGTCGGACGGCATTGAGGTCGAGCAAATTGTGGAGAGCAAGCCGCGCAGGGTGAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TGTCGGACGGTATCGAGGTCGAGCAGATAGTGGAGAGCAAGCCGAGGAGGGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.GTCGGACGGTATCGAGGTCGAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0
.GTCGGACGGTATCGAGGTCGAGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............TCGAGGTCGAGCAGATAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
........GGTATCGAGGTCGAGCAGATA.............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.......................CAGATAGTGGAGAGCAAGCCGAGGAG.........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
........................AGATAGTGGAGAGCAAGCCGAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.............CGAGGTCGAGCAGATAGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...........ATCGAGGTCGAGCAGATAGTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0
........GGTATCGAGGTCGAGCAGATAGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
..................TCGAGCAGATAGTGGAGAGCAAGC................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.......................CAGATAGTGGAGAGCAAGCCGAGG...........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................GAGCAGATAGTGGAGAGCAAGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....GGACGGTATCGAGGTCGAGCG.................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0

droBip1

TGTCGGACGGCATCGAGGTCGAGCAGATAGTGGAGAGCAAGCCGAGGAGGGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGTCGGACGGCCTCGAGGTTGAGCAGATCGTGGAGAGCAAGCCGAGAAGGGTGAGTACTCGT-AGTCCTCCGGGGCGCTATATTTTATATATTTAC----------------A-----TA--------------------------------------------TGTA-------------------CATGCATACACACATACATACAT--AAGTA----------------------------------------------------------CATGTGCATGTGTATGCATAC------AGAATACAGAAAGTAATAAGTGCGGCGGCAAAAGACAACCAACCGAAAATTAAGAATTATAAAAGATTCGATGGG-G------------AAACAAA---------------AGAGCAAAAGAAACGGGGCAACAGA----	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........GGCCTCGAGGTTGAGCAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........GGCCTCGAGGTTGAGCAGATCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0
....................GAGCAGATCGTGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................GGTTGAGCAGATCGTGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................GCAGATCGTGGAGAGCAAGC................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................GATCGTGGAGAGCAAGCCGAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................GTGGAGAGCAAGCCGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................GATCGTGGAGAGCAAGCCGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GGCCTCGAGGTTGAGCAGATCGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................AGATCGTGGAGAGCAAGC................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................CGTGGAGAGCAAGCCGAGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...........CTCGAGGTTGAGCAGATCGTGGAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GCCTCGAGGTTGAGCAGATCGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGTCGGACGGCATCGAGGTTGAGCAGATCGTGGAGAGCAAGCCGAGAAGGGTGAGTACTCGT-AGTCCTCCAGGGCGCTATATTTTATATATTTAC----------------A-----TA--------------------------------------------TGTA-------------------CATACATCCACACATACATATGT--AAGTA----------------------------------------------------------CATGTGCATGTGGATGCATAC------AGTATACAGAAAGTAATAAGTGCGGCGGCAACAGACAACCAACCGAAAATTAAGAATTATAAAAGATTCGATGGG-G------------AAACAAA---------------AGAGCAAAAGAAACGGGGCAACAGAGACA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........ATCGAGGTTGAGCAGATCGTGGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
.........GCATCGAGGTTGAGCAGATCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................................GT--AAGTA----------------------------------------------------------CATGTGCATGTGGATGC......................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
.............CGAGGTTGAGCAGATCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
TGTCGGACGGCATCGAGGTTGAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................AGCAGATCGTGGAGAGCAAGC................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.GTCGGACGGCATCGAGGTTGAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..........CATCGAGGTTGAGCAGATCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droWil2

TGTCAGACGGCATTGAAGTTGAACAAATCGTGGAGAGCAAGCCCAGAAGGGTAAGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................TGAACAAATCGTGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	1	4	0	0
TGTCAGACGGCATTGAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	3	0	0
.GTCAGACGGCATTGAAGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	3	0	0
.................GTTGAACAAATCGTGGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	3	0	0
...........ATTGAAGTTGAACAAATCGTGGAGAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	0	2	0	0
...........ATTGAAGTTGAACAAATCGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0	0
...................TGAACAAATCGTGGAGAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0
.....GACGGCATTGAAGTTGAACAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0
..............GAAGTTGAACAAATCGTGGAGAGCAA..................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0
TGTCAGACGGCATTGAAGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	1	0	0
.GTCAGACGGCATTGAAGTTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0	0
.................GTTGAACAAATCGTGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
................AGTTGAACAAATCGTGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
....................GAACAAATCGTGGAGAGCAAG.................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
......................ACAAATCGTGGAGAGCAAGCCCA.............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.................GTTGAACAAATCGTGGAGAGCAA..................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
....................GAACAAATCGTGGAGAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
................AGTTGAACAAATCGTGGAGA......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.GTCAGACGGCATTGAAGTTGAACAA................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.......CGGCATTGAAGTTGAACAAATCGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
.GTCAGACGGCATTGAAGTTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
TGTCAGACGGCATTGAAGTTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
....................GAACAAATCGTGGAGAGCAA..................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
............TTGAAGTTGAACAAATCGTGGAGAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
..............GAAGTTGAACAAATCGTGGAGAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
.............TGAAGTTGAACAAATCGTGGAGAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
..............GAAGTTGAACAAATCGTGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...........ATTGAAGTTGAACAAATCGTGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
..........CATTGAAGTTGAACAAATCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.....GACGGCATTGAAGTTGAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
TGTCAGACGGCATTGAAGTTGAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.....GACGGCATTGAAGTTGAACAA................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
...................TGAACAAATCGTGGAGAGCAA..................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
........GGCATTGAAGTTGAACAAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.................GTTGAACAAATCGTGGAGAGCAAGCCCA.............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
...........ATTGAAGTTGAACAAATCGTGGAGAGCAA..................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
............................CGTGGAGAGCAAGCCCAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
.........................AATCGTGGAGAGCAAGCCCA.............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
...................TGAACAAATCGTGGAGAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.......CGGCATTGAAGTTGAACAAATCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
...................TGAACAAATCGTGGAGAGCAAGC................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
........GGCATTGAAGTTGAACAAATCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.............TGAAGTTGAACAAATCGTGGAGAGCAA..................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0

droVir3

TGTCAGACGGCATTGAAGTTGAACAAATTGTGGAGAGCAAACCGAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................GAACAAATTGTGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGTCAGACGGCATTGAAGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TGTGGAGAGCAAACCGAGAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGAACAAATTGTGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCAGACGGCATTGAAGTTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GAACAAATTGTGGAGAGCAAACCGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATTGAAGTTGAACAAATTGTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGTCAGACGGCATTGAAGTTGAACAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TGAAGTTGAACAAATTGTGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ATTGTGGAGAGCAAACCGA.............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................TGAACAAATTGTGGAGAGCAAACC...............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TCAGACGGCATTGAAGTTGAACAA................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....AGACGGCATTGAAGTTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GAACAAATTGTGGAGAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.GTCAGACGGCATTGAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATTGAAGTTGAACAAATTGTGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATTGAAGTTGAACAAATTG............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
TGTCAGACGGCATTGAAGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.GTCAGACGGCATTGAAGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GTTGAACAAATTGTGGAGAGCAAAC................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGTCAGACGGCATTGAAGTTGAACAAATTGTGGAGAGCAAGCCGAAAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.GTCAGACGGCATTGAAGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	0	1
....AGACGGCATTGAAGTTGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
....AGACGGCATTGAAGTTGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0
.GTCAGACGGCATTGAAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
.................GTTGAACAAATTGTGGAGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................GAACAAATTGTGGAGAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..................TTGAACAAATTGTGGAGAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............TGAAGTTGAACAAATTGTGGAGAGCAA..................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
....................GAACAAATTGTGGAGAGCAAGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droGri2

TGTCAGACGGCATTGAAGTTGAACAAATTGTGGAGACCAAGCCAAGAAGGGTGAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........ATTGAAGTTGAACAAATTGTGGAGACC....................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0
.........................AATTGTGGAGACCAAGCCAAGAAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0

dsi_23243

node_39788:161873-162022 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-39.9	-39.9	-39.8