ID:

dsi_23206

 Coordinate:

3r:10261755-10261832 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10261695_10261754_+]; CDS [3r_10261695_10261754_+]; CDS [3r_10261833_10262753_+]; exon [3r_10261833_10262753_+]; intron [3r_10261755_10261832_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------##################################################
GAAAGCGGATGGAAAATGTTATCCACAGACATACAAAACGTGCGGGCCTGGTAACTTAATAAAAAAACTGATAAATCTTTAAATCGTGAGATTTTTTTGGTATTTTTTTGCGTTGTCATTTTGTTTAGGATACTTTCTTAGCATTGATGAACTATGCTATCGTACGAATCCTGAGCCT
**************************************************.((((.(((.(((((.(((((.(((((((........)))))))..))))).)))))))).)))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
........................................................................................................................................................TATGCTATCGTACGAATCCTGAGC.. 24 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................ATCGTACGAATCCTGAGCCT 20 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................TACTGACTTAGCATTGATAAA........................... 21 3 3 0.67 2 0 0 2 0 0 0 0
.......................CACAGAGGGACAAAACGTGC....................................................................................................................................... 20 3 7 0.29 2 0 0 0 2 0 0 0
.............................................................................................................GCGTTGTCATTTTGGT..................................................... 16 1 9 0.11 1 0 0 0 0 1 0 0
..........................................................................................................................................TAGCATTGTTGAACT......................... 15 1 9 0.11 1 0 0 0 1 0 0 0
........................ACAGAGGGACAAAACGTGC....................................................................................................................................... 19 3 20 0.10 2 0 0 0 2 0 0 0
GACAGCGGATGGAAAA.................................................................................................................................................................. 16 1 10 0.10 1 0 0 0 1 0 0 0
.............................................................................................................GCGTTGTCATTTTGGGTA................................................... 18 2 10 0.10 1 0 0 0 0 1 0 0
.................................................................................................................TGCCATATTGTCTAGGATA.............................................. 19 3 14 0.07 1 0 0 0 0 0 1 0
...........................................................................................................................................AGCTTTGATGAACTA........................ 15 1 15 0.07 1 0 0 0 0 1 0 0
..............................ATACGAAACGAGCTGGCCT................................................................................................................................. 19 3 19 0.05 1 1 0 0 0 0 0 0
............................................................................................................TGCGTTGTCATTTTGGGTAA.................................................. 20 3 20 0.05 1 0 0 0 0 0 1 0
.........................................................................................................................................TTAGCTTTGATGAGCTA........................ 17 2 20 0.05 1 0 0 0 0 1 0 0
...........................................................................................................................................AGCGCTGATGAACCATGC..................... 18 3 20 0.05 1 0 0 0 0 0 0 1
.......GATGGGAATTGTTATCC.......................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

CTTTCGCCTACCTTTTACAATAGGTGTCTGTATGTTTTGCACGCCCGGACCATTGAATTATTTTTTTGACTATTTAGAAATTTAGCACTCTAAAAAAACCATAAAAAAACGCAACAGTAAAACAAATCCTATGAAAGAATCGTAACTACTTGATACGATAGCATGCTTAGGACTCGGA
**************************************************.((((.(((.(((((.(((((.(((((((........)))))))..))))).)))))))).)))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.......................................CACGCCCGGACCATTCAA......................................................................................................................... 18 1 1 1.00 1 1 0 0 0
.......................................................AATTATTTTTTAGACTA.......................................................................................................... 17 1 5 0.40 2 0 2 0 0
..........................................GCCTGGACCATTTAATCAT..................................................................................................................... 19 3 8 0.13 1 0 0 1 0
.........................GTCTGAATGTTTTGC.......................................................................................................................................... 15 1 10 0.10 1 0 0 0 1
.......................................CACGCCTGGACCATTTAA......................................................................................................................... 18 2 14 0.07 1 0 1 0 0

Generated: 04/24/2015 at 10:39 AM