ID:dsi_23190 |
Coordinate:3l:15834048-15834274 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -34.5 | -34.3 | -34.3 |
 |
 |
 |
CDS [3l_15833928_15834047_-]; exon [3l_15833811_15834047_-]; CDS [3l_15834275_15836108_-]; exon [3l_15834275_15836108_-]; intron [3l_15834048_15834274_-]
No Repeatable elements found
| ##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TTGCCGGCGGCTCAAAAGGCCTGAGCCTAAAGACGTCGCTGCCACGACAGGTAAGATTGGTAGATCTGTTTACGCAAAAGACTTTCATTTTGTGACACTTTGGTTCACAAGATAATCTTAATTCATCTACGAAATAAGAATGAGCGGACTAAAATCTTTTGTTAGGCTTACCGACTACCAACTTCAACGTTTTCTGTCCTTTCTATAGCTGCAACAAATCCCAAACCCCCTCTTATTACTTGCAAACACTTTCACACCTCAATTTTTCTCCTTGCAGCACCTGGTGCACGTGTCTCGCCTGAGCCCTAACGAACTTGTCAACGTCAG **************************************************(((((...(((.((..(((((..((((.........(((((((((.((....)))))))))))..(((((.(((......))).)))))(((((.((..........((((((.((((....(((....(((......)))....)))........))))..))))))..........)).)))))...)))))))))..))...)))............)))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
SRR553485 Chicharo_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
M024 male body |
M025 embryo |
O001 Testis |
|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................................................................................................................................................TGGTGCACGTGTCTCGCCTGAGCCC..................... | 25 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................................................................................................................TGAGCCCTAACGAACTTGTCAACGTC.. | 26 | 0 | 1 | 2.00 | 2 | 0 | 1 | 1 | 0 | 0 | 0 |
| ...............AAGGCCTGAGCCTCAAGACGTCGCTG.............................................................................................................................................................................................................................................................................................. | 26 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................................................................................................CTGAGCCCTAACGAACTTGTCAACG.... | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| .................................................................................................................................................................................................................................................................................................................CTAACGAACTTGTCAAC..... | 17 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................GCCTAAAGACGTCGCTGCCACGACAG..................................................................................................................................................................................................................................................................................... | 26 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..............AAAGGCCTGAGCCTAAAGACGTCGC................................................................................................................................................................................................................................................................................................ | 25 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................................................................................................................AGCCCTAACGAACTTGTCAACGTC.. | 24 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .........................CCTCAAGACGTCGCTGCC............................................................................................................................................................................................................................................................................................ | 18 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................................ATAATCTTAATTCATCTA...................................................................................................................................................................................................... | 18 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...........................................................................................................................................................................................................TGTAGCTGCAACAAAACCAAAAC..................................................................................................... | 23 | 3 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .......................................................................................................................................................AGATCTTTTGTCGGGCTTACC........................................................................................................................................................... | 21 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 |
| .....................................................................................................................................................TAAAATCTGTTGTTAGG................................................................................................................................................................. | 17 | 1 | 2 | 0.50 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................GCCTATAGACGTCGCT............................................................................................................................................................................................................................................................................................... | 16 | 1 | 3 | 0.33 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................TGTAGCTGCAACAAAACCAAAA...................................................................................................... | 22 | 3 | 6 | 0.17 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| .............................................................................................................................................................................................................TCGCTGCAACAAATCTCA........................................................................................................ | 18 | 2 | 8 | 0.13 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................................................................................................................CTTTTATTACTTGCAA.................................................................................. | 16 | 1 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................AGCCTAGCGACGTCGCT............................................................................................................................................................................................................................................................................................... | 17 | 2 | 11 | 0.09 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................CTCTGTTATTACTTGCAAAA................................................................................ | 20 | 3 | 12 | 0.08 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................TGTAGCTGCAACAAAACCAAA....................................................................................................... | 21 | 3 | 13 | 0.08 | 1 | 0 | 0 | 1 | 0 | 0 | 0 |
| ........................GCCTAAAGAAGGCGTTGCC............................................................................................................................................................................................................................................................................................ | 19 | 3 | 15 | 0.07 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ......................GTGCCGATAGACGTCGCT............................................................................................................................................................................................................................................................................................... | 18 | 3 | 20 | 0.05 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
|
AACGGCCGCCGAGTTTTCCGGACTCGGATTTCTGCAGCGACGGTGCTGTCCATTCTAACCATCTAGACAAATGCGTTTTCTGAAAGTAAAACACTGTGAAACCAAGTGTTCTATTAGAATTAAGTAGATGCTTTATTCTTACTCGCCTGATTTTAGAAAACAATCCGAATGGCTGATGGTTGAAGTTGCAAAAGACAGGAAAGATATCGACGTTGTTTAGGGTTTGGGGGAGAATAATGAACGTTTGTGAAAGTGTGGAGTTAAAAAGAGGAACGTCGTGGACCACGTGCACAGAGCGGACTCGGGATTGCTTGAACAGTTGCAGTC
**************************************************(((((...(((.((..(((((..((((.........(((((((((.((....)))))))))))..(((((.(((......))).)))))(((((.((..........((((((.((((....(((....(((......)))....)))........))))..))))))..........)).)))))...)))))))))..))...)))............)))))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | O001 Testis |
M024 male body |
SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
SRR902008 ovaries |
SRR553488 RT_0-2 hours eggs |
M023 head |
SRR553485 Chicharo_3 day-old ovaries |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................................................AGCGACGTTGTTTAGAGT........................................................................................................ | 18 | 2 | 8 | 1.00 | 8 | 8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ....................GAATCGGATTGCTGAAGCG................................................................................................................................................................................................................................................................................................ | 19 | 3 | 18 | 0.39 | 7 | 0 | 6 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ................................................................................................................................................................................................................................................................................................................GGATTGCTAGAACAG........ | 15 | 1 | 3 | 0.33 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................................................................................................................CGGCATTGGTTGAACAGTAG..... | 20 | 3 | 3 | 0.33 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................................................................................................................................CGACGTTGTTTAGAGT........................................................................................................ | 16 | 1 | 7 | 0.29 | 2 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................AGAAAACATTCCGAATGGGA......................................................................................................................................................... | 20 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................................................................................................................TTGGAGAAAGTGGGGAGTTA................................................................ | 20 | 3 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................................................................................................................................................................CTGATGGTTGCAGTCGCATA....................................................................................................................................... | 20 | 3 | 6 | 0.17 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .ACGGCCGCCCAGTTT....................................................................................................................................................................................................................................................................................................................... | 15 | 1 | 13 | 0.15 | 2 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................................................................................................................................................................................................TGCTTGGTCAGTTGCAG.. | 17 | 2 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ................................................................................................................................................................................................................GACGTTGTTTAGAGT........................................................................................................ | 15 | 1 | 20 | 0.10 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 |
| .............................................................................................................................................................................................................ATCGACGTTGTTTTGGTTTTGT.................................................................................................... | 22 | 3 | 11 | 0.09 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................................................................................................................AGGGATTGCTAGAACAG........ | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .............................................................................................................................AGGTGCTTTATTCTT........................................................................................................................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..............................................................................................................................................................................................................GCGACGTTGTTTAGAGT........................................................................................................ | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/23/2015 at 09:31 PM