ID:dsi_23155 |
Coordinate:3l:7995821-7995970 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -21.5 | -21.1 |
 |
 |
Antisense to CDS [3l_7995206_7995800_-]; exon [3l_7995971_7996057_+]; CDS [3l_7995971_7996057_+]; Antisense to five_prime_UTR [3l_7995801_7995897_-]; Antisense to exon [3l_7995206_7995897_-]; intron [3l_7994263_7995970_+]
No Repeatable elements found
| --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACGACTGCGAAATAATTTTAAACGAAACATTTCTTATCGCGTAACGAAATATGCAACTATGTATAAGTGGAAATCCTAACTAGATTTTTATGTTGTTCTGTTTCTGTTTATTTTATGGGGTTGTGACCCAGATATTGTGTTAAAGTTTGACAGGAAAAGAAAATGTTTCATTATTGTCCCTCCCGTGATTACTATTTCAGGTGCTCCCGAGAGGAGTCAGTGGAGATGTATACAATCTGGCGGACTGTCT ***************************************************.(((((.........(((((((((.......))))))))))))))(((.((((((((.((((((((((.......))))..........))))))..)))))))).)))****************************************************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR902009 testis |
O001 Testis |
SRR902008 ovaries |
M025 embryo |
SRR553486 Makindu_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
M023 head |
SRR553487 NRT_0-2 hours eggs |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................................................................................................................CGAGAGGAGTCAGTGGAGATGT..................... | 22 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................................................................................................AGTGGAGATGTGTACAATCTG........... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................................TGGAGATGTATACAATCTGG.......... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................................GATGTATACAATCTGGCGGAC..... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .................................................TATGCAACTATGTATAAGTG..................................................................................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................TGCAACTATGTATAAGTGGAA.................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................TTAAAGTTTGACAGGAAAAGA.......................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................................................................................TGGAGATGTATACAATCTGGC......... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................................GTGCTCCCGAGAGGA................................... | 15 | 0 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................ATTACTTCATCAGGTGCTCC........................................... | 20 | 3 | 10 | 0.20 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 |
| .....................................................................................................TCCTGTGAATTTTATGGGGT................................................................................................................................. | 20 | 3 | 6 | 0.17 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .................................................................................................................................................GTTGACAGGAAAAGA.......................................................................................... | 15 | 1 | 13 | 0.15 | 2 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 |
| .........AAATAATTTTGAACGAA................................................................................................................................................................................................................................ | 17 | 1 | 9 | 0.11 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .............................................................................AACTAGAATTTTATGTCGGT......................................................................................................................................................... | 20 | 3 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ...........ATAATTTTGAACGAAACT............................................................................................................................................................................................................................. | 18 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ............................................................................................................................................TAAAGATTGAAAGGAAATGAA......................................................................................... | 21 | 3 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..................................................................................................................................................TTGACAGGAAAAGAG......................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ...........ATAATTTTTAACGAAA............................................................................................................................................................................................................................... | 16 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ###############################################################################################################################--------------------------------------------------------------------------------------------------------------------------- TGCTGACGCTTTATTAAAATTTGCTTTGTAAAGAATAGCGCATTGCTTTATACGTTGATACATATTCACCTTTAGGATTGATCTAAAAATACAACAAGACAAAGACAAATAAAATACCCCAACACTGGGTCTATAACACAATTTCAAACTGTCCTTTTCTTTTACAAAGTAATAACAGGGAGGGCACTAATGATAAAGTCCACGAGGGCTCTCCTCAGTCACCTCTACATATGTTAGACCGCCTGACAGA ******************************************************************************************.(((((.........(((((((((.......))))))))))))))(((.((((((((.((((((((((.......))))..........))))))..)))))))).)))*************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553485 Chicharo_3 day-old ovaries |
SRR553487 NRT_0-2 hours eggs |
SRR553486 Makindu_3 day-old ovaries |
O001 Testis |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................................................................................CGCGGGCTCTCCTCA................................. | 15 | 1 | 2 | 1.50 | 3 | 2 | 0 | 1 | 0 | 0 |
| ......................................................................................AAATACAACAAGACAAAGA................................................................................................................................................. | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 |
| .................................AATCGCGCATTGCTGTTTACGT................................................................................................................................................................................................... | 22 | 3 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 |
| ....................................AGCGCATTGCTTTATACGTTG................................................................................................................................................................................................. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................................................................................GCGGGCTCTCCTCAGT............................... | 16 | 1 | 3 | 0.33 | 1 | 0 | 0 | 1 | 0 | 0 |
| ........................................................................................................................................................................................................CGCGCGGGCTCTCCTCA................................. | 17 | 2 | 4 | 0.25 | 1 | 0 | 0 | 1 | 0 | 0 |
| ......................................................................................................................................................................................................ACCACGCGGGCTCTCCT................................... | 17 | 2 | 6 | 0.17 | 1 | 0 | 1 | 0 | 0 | 0 |
| ..............................................................................................................................................................................ACTGGGATGGCACTAAT........................................................... | 17 | 2 | 7 | 0.14 | 1 | 0 | 0 | 1 | 0 | 0 |
| ......................................................................................................................................................................................................ACCGCGCGGGCTCTCCTC.................................. | 18 | 3 | 20 | 0.10 | 2 | 1 | 1 | 0 | 0 | 0 |
| .........................................................................................................................................................................................................GCGCGGGCTCTCCTCA................................. | 16 | 2 | 12 | 0.08 | 1 | 0 | 1 | 0 | 0 | 0 |
| .............................................................................................................................................................................AACTGGGAGGGCACTACC........................................................... | 18 | 3 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 |
| ................................................................TTCACGTTTAGGATT........................................................................................................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 |
| ...........................................................................................................................................................................................................GCGCGCTCTCCTCAGT............................... | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 |
Generated: 04/24/2015 at 10:36 AM