ID:

dsi_23146

 Coordinate:

2r:4820255-4820404 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-23.5 -23.4 -23.4

Flybase annnotation

CDS [2r_4820405_4820481_-]; exon [2r_4820405_4820481_-]; intron [2r_4819990_4820404_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ACGAGAGCATCAGTTCCATGGACGAGGGTCCAGTGGCGCCTCCCCGTAAGGTAAGTCCCCCAAGAACGTTTAGTGGGTTATGAAAAGGTCCTGTAGATCAACACCCAAACCTTTCTTTGTATTTGATCTAATCCGCACTCGGAAAACAATTTGCAGCGCAAGCAACACATCACTCAATTGAGATGCCAGTCCAGCGAGGAGACGGTAAATGGCAAGCACCACCGCTCATTTGCACTTTCATACAATGTTT
**************************************************.....(((((((...........))))................((((((((....((((......))))...)))))))).((((....)))).......((((.......))))....((.((..((((......))))..)).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M025
embryo
 M053
female body
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
......GCATCAGTTCCATGGACGAG................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0
............GTTCCATGGACGAGGGTCCAGT........................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..............TCCATGGACGAGGGTCCAGTGGC..................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
........ATCAGTTCCATGGACGAGGGT............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................GTTATGAAAAGGTCCTGTAGATC....................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................AAGCACCACGGCTCTTGTG.................. 19 3 6 0.33 2 0 0 0 0 0 2 0 0
.....................................GCCTCCGTGTAAGGGAAGTC................................................................................................................................................................................................. 20 3 3 0.33 1 1 0 0 0 0 0 0 0
.........................................................................................................................................CTCGGACAACAATTAGCAGCT............................................................................................ 21 3 4 0.25 1 0 0 0 0 1 0 0 0
............................................CGTAGGGTGAGTCCCC.............................................................................................................................................................................................. 16 2 8 0.13 1 0 0 0 0 0 0 0 1
......................................................................................................................................................................................ATGCAAGTCGAGCGGGGAGA................................................ 20 3 16 0.13 2 0 0 0 0 0 0 2 0
...................................................................................................................................................................................................GAAGAGACTGTAAATGGC..................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0
........................................................................................................................................ACTCGGAAAACGGTTTCCAG.............................................................................................. 20 3 9 0.11 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................CGTGGAGAAGGTAACTGGC..................................... 19 3 15 0.07 1 1 0 0 0 0 0 0 0
........................................................................................................................ATTTGAACTAATCCGGACA............................................................................................................... 19 3 18 0.06 1 0 0 0 0 1 0 0 0
......................................................................................GGTCCTGTAGTTGAACAAC................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

TGCTCTCGTAGTCAAGGTACCTGCTCCCAGGTCACCGCGGAGGGGCATTCCATTCAGGGGGTTCTTGCAAATCACCCAATACTTTTCCAGGACATCTAGTTGTGGGTTTGGAAAGAAACATAAACTAGATTAGGCGTGAGCCTTTTGTTAAACGTCGCGTTCGTTGTGTAGTGAGTTAACTCTACGGTCAGGTCGCTCCTCTGCCATTTACCGTTCGTGGTGGCGAGTAAACGTGAAAGTATGTTACAAA
**************************************************.....(((((((...........))))................((((((((....((((......))))...)))))))).((((....)))).......((((.......))))....((.((..((((......))))..)).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
.........................................................................................................................................................................AGTGAGTTAACTCTACGGTCAGGTCGC...................................................... 27 0 1 1.00 1 0 1 0 0 0
.................................................................................................AGTTGTGTGTTGGGAAAGAAACAA................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................CTCTACGGTCAGGGCG....................................................... 16 1 3 0.33 1 1 0 0 0 0
.........................................................................................................................................................................................GGTCAGGTCGTTCCTATGC.............................................. 19 2 6 0.17 1 0 0 1 0 0
.........................................................................................................................CAACTAGAGTAGGCGTGAGT............................................................................................................. 20 3 9 0.11 1 0 0 0 1 0
....................................................................................................................................................................................TCTACCGTCAGGTCGGGC.................................................... 18 3 20 0.05 1 0 0 0 0 1
.........................................................................................................................................................................................CGTCAGGTCGCTCCT.................................................. 15 1 20 0.05 1 0 0 0 1 0

Generated: 04/23/2015 at 06:08 AM