ID:

dsi_23130

 Coordinate:

3r:4409446-4409595 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.3 -28.2 -28.1 -28.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATTTTAGAAAGCTAACTTTATTGCAGAAGAATTCATGCAAAACTGAGATAGTACATGTAGGAAATAACCACATATTTGTATTAGAACAAGTGCCACTGAGTAATGTTGAGTCATTTCTTTGGGATTACGTGCCCTGCATTAAAATACCCAATTGTTCATTGTGGTTACTCACTTGCTGATTGGCTATATTCGATTTGCAGTGCACACCCACCGTCTACCCGGCGGATCCCTTCGATCCCGTCGAGGATGC
**************************************************........................((.(((...(((.....((((...(((((.((.((((.(((...((((((((..((((...))))...))).)))))...........))).)))))))))))...))))....)))....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
........................................................................................................................................................................................................TGCACACCCACCGTCTACCCGGCGGA........................ 26 0 1 4.00 4 1 0 3 0 0 0 0 0 0
.......................................................................................................................................................................................................................TACCCGGCGGATCCCTTCGATCCCGT......... 26 0 1 3.00 3 0 2 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................TACCCGGCGGATCCCTTCGATCCCGTC........ 27 0 1 3.00 3 0 3 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CCCTTCGATCCCGTCGAG..... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GATCCCTTCGATCCCGTCGAG..... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TACCCGGCGGATCCCTCCGATCCCGTC........ 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................AATTGTTCATTGTGGTTACT................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................CATTGTGGTTACTCACTTGCTG........................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................CCAATTGTTCATTGTGGTTACTC................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................GATCCCTTCGATCCCGTCGAGGAT.. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................CGTCTACCCGGCGGATCCCTTCGAT.............. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GGATCCCTTCGATCCCGTCGAGGAT.. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.TTATAGCAAGCTAACTTTAATG................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 1 0 0 0 0 0 0 0
........................................AGCTGAGATAGTAGAGGTA............................................................................................................................................................................................... 19 3 11 0.27 3 0 0 0 0 0 0 2 0 1
.....................................................................................................................TTCGTGATTAGGTGCCCTGC................................................................................................................. 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CCGTTCGATCCCGTC........ 15 1 4 0.25 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................CGATCCCGTCGAGGTT.. 16 1 5 0.20 1 0 0 0 0 0 1 0 0 0
............................................................................................CCAGTGAGAAATGTTGCGT........................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................TTCGATCCCGTCTAGC.... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TAAAATCTTTCGATTGAAATAACGTCTTCTTAAGTACGTTTTGACTCTATCATGTACATCCTTTATTGGTGTATAAACATAATCTTGTTCACGGTGACTCATTACAACTCAGTAAAGAAACCCTAATGCACGGGACGTAATTTTATGGGTTAACAAGTAACACCAATGAGTGAACGACTAACCGATATAAGCTAAACGTCACGTGTGGGTGGCAGATGGGCCGCCTAGGGAAGCTAGGGCAGCTCCTACG
**************************************************........................((.(((...(((.....((((...(((((.((.((((.(((...((((((((..((((...))))...))).)))))...........))).)))))))))))...))))....)))....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
...........................................................................................................................................................................................................TGAGGGCGGCAAATGGGCCGC.......................... 21 3 1 1.00 1 1 0 0 0 0 0
.......................GTCTTCTCAAGTACGT................................................................................................................................................................................................................... 16 1 3 0.67 2 0 0 0 1 1 0
...........................................................................................................................................................................................................TGAGGGTGGCAAATGGGC............................. 18 2 20 0.50 10 10 0 0 0 0 0
.............................................................................................................................................................................................................TAGGTGGCAAATGGGC............................. 16 2 20 0.40 8 0 8 0 0 0 0
............................................................................................................................AATGCGCGGGACGTAGTT............................................................................................................ 18 2 3 0.33 1 0 0 1 0 0 0
......................GGTCTTCTCAAGTACGT................................................................................................................................................................................................................... 17 2 20 0.20 4 0 1 1 2 0 0
......................................................................................................................................................................................................TCACGGGTGGGTCTCAGATG................................ 20 3 5 0.20 1 0 0 0 0 0 1
............................................................................................................................................................................................................GTAGGTGGCAAATGGGC............................. 17 2 12 0.17 2 0 2 0 0 0 0
............................................................................................................................................................................................................GTGGGTGGCAGATCG............................... 15 1 12 0.08 1 0 0 1 0 0 0

Generated: 04/24/2015 at 06:09 AM