ID:

dsi_23078

 Coordinate:

2l:12084019-12084239 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

Antisense to CDS [2l_12084283_12084309_+]; Antisense to five_prime_UTR [2l_12084258_12084282_+]; Antisense to exon [2l_12084258_12084309_+]; five_prime_UTR [2l_12083927_12084022_-]; exon [2l_12083828_12084022_-]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------######################################################
CTTCCATTTCGATGAGTTAAGAGAATACACGTGGGGCAGTGTTGAAAAACGTAAGCTACTATCTAAACATATACCAATTTGTTGTTGAATAAAAAGGTTTTGTAATATTTATTTGAGTTATTTAAAGATTAAAATAAAATAAAATTATATTATTATTAAATATGGCTGAAAAATAAAACTTGGAGCTAGCTACTGTGCCACCACCAGGATTATCGAATGACTATCGAACCCAAAGTCCGCCCCTATGCTTGATAAAGAAATTAATTTGCAGAAGTGAAACAGCCGCAGCCGCAAACAGAAGCAAAACAGCTAGAAGCGATA
**************************************************(((((.((...(((........(((..((((((....))))))..)))...(((((((..((((...((((((........))))))....)))).)))))))((((((.((((((.((.........(((((.....((......)).....)))))....((((.......))))........)).)))...))).)))))).)))...)).)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 M023
head
...........................................................................................................................................................................................................................................................................................................AGCAAAACAGCTAGAAGCG... 19 0 1 2.00 2 1 0 0 0 0 1 0 0
........................................................................................................................TTTAAAGATCAAAAGAAACTAAAAT................................................................................................................................................................................ 25 3 1 2.00 2 0 0 2 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................AGAAGCAAAACAGCTAGA....... 18 0 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................AGCCGCAAACAGAAGCAA................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
....CATTTCGACGAGTTAAG............................................................................................................................................................................................................................................................................................................ 17 1 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................GCAAAACAGCTAGAAGCG... 18 0 1 1.00 1 0 0 0 1 0 0 0 0
.....ATTTTGATGAGTTAAGA........................................................................................................................................................................................................................................................................................................... 17 1 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................TTTAAAGATCAAAAGAAACTAAAATT............................................................................................................................................................................... 26 3 1 1.00 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................CGCAAACAGAAGCAAAACAGCTAGA....... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GAAGTGAAACAGCCGC................................... 16 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................ATCAAACTTGGAGATAGCT.................................................................................................................................. 19 2 3 0.67 2 0 0 1 0 1 0 0 0
............TGAATTAACTGAATACACGTG................................................................................................................................................................................................................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................TGAAAACTAAAACTTGGAACT...................................................................................................................................... 21 2 3 0.33 1 0 0 0 0 0 0 1 0
.............................................................................................................................................................................TCAAACTTGGAGATAGCT.................................................................................................................................. 18 2 6 0.17 1 0 0 0 0 1 0 0 0
.....ATTTCGACGAGTTAA............................................................................................................................................................................................................................................................................................................. 15 1 11 0.09 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................AATCGAACTTGGAGATAGCT.................................................................................................................................. 20 3 13 0.08 1 0 0 0 0 0 0 0 1
...................................................TAAGCGACTATCTAAAA............................................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 1 0 0 0
..................................................................................TGTTGAATAAAAAGA................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GAAGGTAAAGCTACTCAATTCTCTTATGTGCACCCCGTCACAACTTTTTGCATTCGATGATAGATTTGTATATGGTTAAACAACAACTTATTTTTCCAAAACATTATAAATAAACTCAATAAATTTCTAATTTTATTTTATTTTAATATAATAATAATTTATACCGACTTTTTATTTTGAACCTCGATCGATGACACGGTGGTGGTCCTAATAGCTTACTGATAGCTTGGGTTTCAGGCGGGGATACGAACTATTTCTTTAATTAAACGTCTTCACTTTGTCGGCGTCGGCGTTTGTCTTCGTTTTGTCGATCTTCGCTAT
**************************************************(((((.((...(((........(((..((((((....))))))..)))...(((((((..((((...((((((........))))))....)))).)))))))((((((.((((((.((.........(((((.....((......)).....)))))....((((.......))))........)).)))...))).)))))).)))...)).)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..AGGTAAAGCTACTCAATTCT........................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................................CAGTCGGGGATATGAAGTA.................................................................... 19 3 5 0.60 3 0 3 0 0 0 0
.......................................................................................................................................................................................................................TTACTGATAACTTGGGTTTGAT.................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0
..................................................................................................................................TTTTATTTTATTTTAATA............................................................................................................................................................................. 18 0 9 0.44 4 0 0 0 4 0 0
.........................................................................................................................................................................................................................ACTGATAGCTTGGCCT........................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................................CGTTTTGTCGGTCTTCA.... 17 2 20 0.05 1 0 0 0 0 1 0
...............................................................................................................................................................................................................................................................................TCCACTATGTCGGCGTC................................. 17 2 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:12083969-12084289 - dsi_23078 CTTCCATTTCGA--------------TGAGTTA-----------------------------------------------------AGAGA-------------ATACACGTGGGGCAGTGTTGAAAAACG-----------------------------------------------TAAGCTACTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAACATATACCAATTT-------------------------------GTT----------------------------------------------------------------------------------------------------------------------------------------------GT------------TGAATAA--AAAGGTTTTGTAATATTTATTTGAGTTATTTAAAGATTAAAATAAAATAAAATTA---TAT-----------------T------------------------------------------------ATTATTAAA---------------------------TATGGCTGAAAAATAAAA-----------------------CTTGGAGCTAGCTACTGTGCCACCACCAG-GATTATCGAAT-GACTATCGAACCCAAAGTCCGCCCC-------TATGCTTGATAAAGAAA--------TTAATTTGCAGAAGTGAAACAGCCGCAGCCGCAAACAGAAGCAAA---------A------------CAGCTAGAAGCGATA-------------------------
droSec2 scaffold_16:618047-618398 - CTTCCATTTGGA--------------TGAGTTA-----------------------------------------------------AGAGA-------------ATACACGTGGGGCAGTGTTGAAAAACG-----------------------------------------------TAAGCTACTAGCTATTAAGCCTTAAAA----------------CTAA-------------------------------------------------------------------------------------------------------------AC------A----------------------------CAAGAAGCTATCTAAACATATACAAATTT-------------------------------GTT----------------------------------------------------------------------------------------------------------------------------------------------GT------------TGAATAA--AATTGTTTCTTAATATTTATTTGAATTATTTAACAATTAAAACTAAAT-----TCTAG----TAATAAATTATAA-ATT------------------------------------------------GAAATTAAA---------------------------TATGGATGGAAAATA------------------------------AAACTAGCTACTGTGCCACCACCAG-GATTATCGAAT-GACTATCGAACCCAAAGTCCGCCCC-------TATGCTTGATAAAGAAA--------TTAATTTGCAGAAGTGAAACAGC------CGCAAACAGAAGCAAA---------A------------CATCTAGAAGCGATA-------------------------
dm3 chr2L:12427610-12428063 - CTTCCATTTGGA--------------TGAGTTA-----------------------------------------------------AAAGA-------------ATACACGTGGGGCAGTGTTGAAAAACG-----------------------------------------------TAAGCTACTAGCTATTAAGCTTTAAAA----------------CTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATACACAAATTT-------------------------------GTTGTTTTTTATATGAAATACGAAATAA----------------------ACATTACAGAATTATATTTAAGTTTAATTTAGTTTCAAAATTTACAA-------TTTGGGTATATTCTCTGTAATAATACATCCCATAAAATGATGT------------TGAATAA--AAATGGTTCTTAATATTTATTTGAATTATTTAAAGATTAAAATAAATTAAAATA-----------------ATAA-ATT------------------------------------------------GACATTAAA---------------------------TATGACTGGAAAATAAAA-----------------------CTTGAAGCTAGCTACTTTGCCACCACCAG-GATTATCGAAAGGACTATCGAAC-CAAAGTCCGCCCC-------TATGCTTGATAAAGAAA--------TTAATTTGCAGAAGTGAAACAGCCGCAGCCGCAAACAGAAGCAAA---------A------------GAGCTAGAAGTGATA-------------------------
droEre2 scaffold_4929:12988897-12989146 + TGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT------------TGATTAA--ATATGTGCCTCAATATTTATTTGAATACTTTAAAGACTAAAAATAATCAAATTAA---TGTA------AATAT-AGCCT------------------------------------------------GCACTATTG---------------------------TATGGTTGGAAAATT--T-----------------------CTAGAGAAGAGCTATTTTGGCATCCCTAG-GATTATCGAAAGTACTATCGAAC-AAAAGTCCGCCCC-------TATGCTTGATAAAGAAA--------TAAATTTGCAGAAGTGAAACAGCCGCAGTCGCAAACAGAAGCAAA---------A------------CAGCTAGAAGCGATT-------------------------
droYak3 2L:8863861-8864109 - TATTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAATATTATTATTCAATATTTATTAAAAGACTATAAACATCCAAATTAATTTAAATTG---TGTT------AATATAAGCCT-------------------------------------------------ACTTTAAA---------------------------AATGGTTAGAATATA--T-----------------------CTAGATACCAGCTATTATGGCACCTCTAG-GATTATCGAAAGGACTATCGAGC-CAAAGTCCGCCCC-------TATGCTTGATAAAGAAA--------TTAATTTGCAGAAGTGAAACAGCCGCAGCCGCAAACAGCAGCAAA---------T------------TAGCTAGAAGCGATA-------------------------
droEug1 scf7180000409122:814186-814625 - TTTCCATTTGGACTCCAAATTTTGGAGGCGATA-----------------------------------------------------AAAAA-------------ATACACGTGGGGCAGTGTTGGGTAATAT-----CCTTGGCAACA------------------------------TATGTAGTTGGCTATAAAATCT---------TTAGCT--------AA-------------------------------------------------------------------------------------------------------------ATCTTCAGGGAAA-----AAGCTGACTGT---CATGTCAAAAAGCTTGGTAAAATTGTGCAATATATTT------------------------------------------------------------------------------TCA--------------------------TTATTCCGAAAAATTTTT-------TTTAGGTTCTTTCATTAAAATAA--------------TGAAATTTTATGAAACAATAAATAC----------------------------------------------------------------------------------------------------------------GTTTATTTATTTTATAAGGTATTGAT---------------------------TGTTGGTATAAAATAAATCATAA---AGT----GTATGCCTACCGTAAATAGCAATCCTGCCACCACTAA-AGATATCGAATCGCTTATCGGGA-CGGAGTCCACCCC-------TAGGCTTGATAAAGAAA--------TTAATTTGCAGAAGTGAAACAGCCGTAGTCGCAAACAGAAGCATA---------A------------CATCTAGAAGCGATA-------------------------
droBia1 scf7180000302422:544047-544227 + AAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTAAGCAGTAAATATAA------------------------------------------------------------TT------AGCGTCAGACA-------------------------------------------------AC--------------------------------------------------------------------------AATCGAAATAGCTAGAGTGCTATCACCAA-AGTTATCGAAGG--CCCTCGGAC-CGCTGTCCACCCC-------TATGCCTGATAAAGAAA--------TTAATTTGCAGAAGTGAAACAGCCGCAGCCGCAAACAGGAGCAAA---------G------------CAGATAGAAGCGATA-------------------------
droTak1 scf7180000415865:169081-169298 + TACAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTTACCATATTTTG--------------------------------------------------------CTTAAGATCTTTTGAAATT----------------------------------------------------------------------------GAAAA-------CAAAATAATAAAA-ATAGTCACTCGAAAATAGCTAACTTGCCATTACCAA-AAGTATCGAAAATCGAATCGGGC-CGGAGTCCACCCC-------TAAGCTTGATAAAGAAATTATCAAAGAAATTTGCAGAAGTGAAACAGCCGCAGCCGCAAACAGAAGTAAA---------T------------CAGCTAGAAGCGATA-------------------------
droEle1 scf7180000491028:2686602-2687083 + CTTCCATTTGAA--------------GGTGATA-----------------------------------------------------AAAA-AC-----------ATCCACGTGGGGCTGTGTTGGATAACGCGCTGCCTTCGGTAGTGCTGAGAAACGCTTTGTC----------------------AGCTATCTAGCTATAAAAATGTTCAGTTGGATATCTAAAAACACGATGTCTGCAAAGAATTATAGCTAGCAAGTTATTTCTAAATTAATTCAATAATTTGTTTGAAAATAAGTACGATGTGAAATCTATAATTAAAGTAAGCACTAAACCTTAAAGGTAA-----AAATGGATAGAAAATAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGAAA-----C------------------------------ATTCTATAATGATTTTAATAA-----------------AAACATTTACATA-ACT------------------------------------------------ATAATTTAACAAGGAAATAAAAAAACG----CT--------------------------------------------GTTTGCACTAGCTAACTTTCCATCACCCG-ATGTATCGACATATTTATCGGGC-CGGAGTCCATCCC-------TATGGTTGATAAAGAAA--------TTAATTTGCAGAAGTGAAGCAGTTGCAGCCGCAAACAGAAGCAAA---------T------------CCTCTAGAAGCGATA-------------------------
droRho1 scf7180000780043:286319-286788 - CTTCCATTTAAA--------------GGTGATA-----------------------------------------------------AAAA-TC-----------ATCCACGTGGGGCTGTGTTGGACAACGCGATAGCTTTGGTAGTGCTGAAAAACGCCATGTAACCAATA-------AAGCTA-TAGCTATCTAGCTATAAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACTAATTGCTTAAAAAATAGTTTTTTCGGAAATAAAAATGTA-------------------------TTGGCCTAAAAGTCTATCTAACTCT--------------------------TTGAATTGAATAATTTTAAACAAATTTTGTGCAC-AACAAAAAGAAAA--------------TGGAATTTACAAAAATGGTAGA------------------------------TAATATATTGATTAAATTAA-----------------GAATATTTTGTAA-ACC------------------------------------------------GCCATCAAACATGGAAATGAATAGACCGAATCA--------------------------------------------TTTTGCACTAGCCAAATTGCCATCACCGG-ATATATCGACACATTTATCGGGC-CGTAGTCCACCCC-------TTTGCTTGATAAAGAAA--------TTAATTTGCAGAAGTGAAGCAGCCGCAGCCGCAAACAGAAGCAAA---------G------------CATCTAGAAGAGATA-------------------------
droFic1 scf7180000454015:312473-312888 - CTTCCATTTGCA--------------GATCTTA-----------------------------------------------------AAAAAAC-----------ATCCACGTGGGGTTGTGTTGGACAATGCTTTTTTAACGGCAGTGCTGAAACACGGTGTGTCCGCTTAACAGCTGGAAGTAAATAGCTATAAAATAT---------TTCGTTAGA-----------------------------------------------------------------------------------------------------------------------------GAAATTGAAAAGAATTCTTT---TTTGACAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAAACCCTTTAACATTTAAGTT-------------------------CACAT-TGTAA---AGTTTTTCAACTTAAAAACAATGAACATGAGCATT-------------AACCAA------------------------AATA---TATGCAAAGTAAAATTTAAAAAAATAATA-GCAGT--CTTGAAACTAGCTAAC-TCCCACAATCGAGAAATATCGAAACGTCTATCGTGC-CGTAGTCCACCCC-------TATGCTTGATAAAGAA------------ATTTGCAGAAGTGAAGCAGCCGCAGTTGCAAACAGAAGCAAA---------A------------CAGCTAGAAGCGATA-------------------------
droKik1 scf7180000301476:528667-528708 - C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAAACAGAAGCGAAAAGCCACTGA------------CAGCGATAAGCGATA-------------------------
droAna3 scaffold_12916:12970664-12970737 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCTGATAA--AAA--------TTAATTTGCAGAAGTTAAGCAGCCGCCGCCGGAATC-GAAGCT-A---------T------------CAGCCAGAAGCTTTT-------------------------
droBip1 scf7180000396580:557067-557329 - TATTTAATTATA--------------TAAATTTATTACCAATAAATAGCTATTTATTACCAATAATGCATACTTTTTGAAATAACAAAAT-ATCAAAGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT-CGCAT---------------------------------------------------ATTCGA------------------------TATT---TAGGCAAAGAAACA-----------------------AATAACGATAGATACATTTT--TAACCAA-GATTATCGATATTT---TCATTC-TGTTGACAACCCTACAATAATAGGGCTGATAA--AAA--------TTAATTTGCAGAAGTTAAGCAGCCGCCGCCGGAATC-GTAGCTAC-------CAT------------CAGCTTGAAGCTTTT-------------------------
dp5 4_group3:5660482-5660577 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCGGTTT-------TGTCATTGATAAAGAAAA----AAATAAATTTGCA--AGTTAAGCAGGCGCCACCGCTACCAGCAGCAGC---------AGCAGCAGCAC-------CCCCGCGATA-------------------------
droPer2 scaffold_1:7151852-7151947 + A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCGTTTT-------TGTCATTGATAAAGAAAA----AAATAAATTTGCA--AGTTAAGCAGGCGCCACCGCTACCAGCAGCAGC---------AGCAGCAGCAC-------CCCCGCGATA-------------------------
droWil2 scf2_1100000004521:10176743-10176804 - CTTCCATTTAAA--------------CGCCGCA-----------------------------------------------------AAAA-ACCAAAACAAAAAACACGTGTAAGACAGGGCTGCCAGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:17563318-17563361 - C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCGCCGACGCAAATAGAAGCAGG---------AAAACGGG----------CAAAAAGAAA-------------------------
droMoj3 scaffold_6500:22608904-22608957 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCGCCGACGCAAACAGAAGCAAG---------GAAAAGAGGAAAACGGCTAACAAAGAGC-------------------------
droGri2 scaffold_15252:14992325-14992396 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCGGCCGCCGACGCAAACACAAGCAAA---------AG-----------AAAAAGGAAGAGAAAAGGGCAACAGATAAGAGATACGCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTTCCATTTCGA--------------TGAGTTA-----------------------------------------------------AGAGA-------------ATACACGTGGGGCAGTGTTGAAAAACG-----------------------------------------------TAAGCTACTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAACATATACCAATTT-------------------------------GTT----------------------------------------------------------------------------------------------------------------------------------------------GT------------TGAATAA--AAAGGTTTTGTAATATTTATTTGAGTTATTTAAAGATTAAAATAAAATAAAATTA---TAT-----------------T------------------------------------------------ATTATTAAA---------------------------TATGGCTGAAAAATAAAA-----------------------CTTGGAGCTAGCTACTGTGCCACCACCAG-GATTATCGAAT-GACTATCGAACCCAAAGTCCGCCCC-------TATGCTTGATAAAGAAA--------TTAATTTGCAGAAGTGAAACAGCCGCAGCCGCAAACAGAAGCAAA---------A------------CAGCTAGAAGCGATA-------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAA---------A------------CAGCTAGAAGCG............................1912.00200001000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAAA---------A------------CAGCTAGA................................1811.00100000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCAAACAGAAGCAA...............................................................1811.00100000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAA---------A------------CAGCTAGAAGCG............................1811.00100000100000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAACAGAAGCAAA---------A------------CAGCTAGA................................2511.00100000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAAACAGCCGC.................................................................................1611.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------------------------------------------------------------------------------GT------------TGAATAA--AAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000001000000000
droSec2
CTTCCATTTGGA--------------TGAGTTA-----------------------------------------------------AGAGA-------------ATACACGTGGGGCAGTGTTGAAAAACG-----------------------------------------------TAAGCTACTAGCTATTAAGCCTTAAAA----------------CTAA-------------------------------------------------------------------------------------------------------------AC------A----------------------------CAAGAAGCTATCTAAACATATACAAATTT-------------------------------GTT----------------------------------------------------------------------------------------------------------------------------------------------GT------------TGAATAA--AATTGTTTCTTAATATTTATTTGAATTATTTAACAATTAAAACTAAAT-----TCTAG----TAATAAATTATAA-ATT------------------------------------------------GAAATTAAA---------------------------TATGGATGGAAAATA------------------------------AAACTAGCTACTGTGCCACCACCAG-GATTATCGAAT-GACTATCGAACCCAAAGTCCGCCCC-------TATGCTTGATAAAGAAA--------TTAATTTGCAGAAGTGAAACAGC------CGCAAACAGAAGCAAA---------A------------CATCTAGAAGCGATA-------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAAA---------A------------CATCTAGAAG..............................1812.0020011
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------TTAATTTGCAGAAGTG...........................................................................................1811.0010001
dm3
CTTCCATTTGGA--------------TGAGTTA-----------------------------------------------------AAAGA-------------ATACACGTGGGGCAGTGTTGAAAAACG-----------------------------------------------TAAGCTACTAGCTATTAAGCTTTAAAA----------------CTAA---------------------------------------------------------------------------------------------------------------------------------------------------------------AAATATACACAAATTT-------------------------------GTTGTTTTTTATATGAAATACGAAATAA----------------------ACATTACAGAATTATATTTAAGTTTAATTTAGTTTCAAAATTTACAA-------TTTGGGTATATTCTCTGTAATAATACATCCCATAAAATGATGT------------TGAATAA--AAATGGTTCTTAATATTTATTTGAATTATTTAAAGATTAAAATAAATTAAAATA-----------------ATAA-ATT------------------------------------------------GACATTAAA---------------------------TATGACTGGAAAATAAAA-----------------------CTTGAAGCTAGCTACTTTGCCACCACCAG-GATTATCGAAAGGACTATCGAAC-CAAAGTCCGCCCC-------TATGCTTGATAAAGAAA--------TTAATTTGCAGAAGTGAAACAGCCGCAGCCGCAAACAGAAGCAAA---------A------------GAGCTAGAAGTGATA-------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
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.............................................................................................................................AAAACG-----------------------------------------------TAAGCTACTAGCTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAGCAAA---------A------------GAGCTAG.................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACAGAAGCAAA---------A------------GAGCTAGAAGT.............................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAAACAGAAGCAAA---------A------------........................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGAAGCAAA---------A------------GAGCTAGAAGT.............................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAAGTGAAACAGCCGCAG...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGCCGCAAACAGAAGCA................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAAGTGAAACAGCCGCA................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA---------A------------GAGCTAGAAGTGA...........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGTGAAACAGCCGCAGCCGCAAAA.......................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAAACAGAAGCAAA---------A------------GA......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAAACAGAAGCAAA---------A------------GAGCTA..................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAAA---------A------------GAGCTAGAAGTGATA-------------------------2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGAAGTGAAACAGC....................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGCAAACAGAAGCAAA---------.....................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAACAGCCGCAGCCGCAAACAGA....................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAAACAGAAGCAAA---------A------------GA......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGAAGTGAAACAGCCG..................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCAGAAGTGAAACAGCC...................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCCGCAAACAGAAGCAAA---------A------------GAGC....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAA---------A------------GAGCTAGAAGTT............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAAACAGAAGCAAA---------A------------G.......................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAA--------TTAATTTGCAGAAGTG...........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---------A------------GAGCTAGAAGTGAC..........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAAGTGAAACAGCCGC.................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACAGCCGCAGCCGCA..........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGAAGCAAA---------A------------GAGCTAG.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..........GA--------------TGAGTTA-----------------------------------------------------AAAGA-------------ATACACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGAAGCAAA---------A------------GAGCTAGAAT..............................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACAGAAGCAAA---------A------------GAGCTAGAAGT.............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGAAGCAAA---------A------------GAGCTAGAAGTG............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAACAGCCGCAGCCG............................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAGCCGCAAACAGAAGCAAA---------A------------GAG.....................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAGCAAA---------A------------GAGCTAGAAA..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGCAAA---------A------------GAGCTAGAAGTGATA-------------------------2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATAAAGAAA--------TTAATTTGC..................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCCGCAAACAGAAGCAAA---------C------------........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCCGCAAACAGAAGCAAA---------A------------GAGCT...................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGCAAA---------A------------GAGCTAGAAG..............................2111.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTGAAACAGCCGCAGCCGCA..........................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................GTTA-----------------------------------------------------AAAGA-------------ATACACGTGGGGCAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAGCAAA---------A------------GAGCTAGA................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCAAACAGAAGCAAA---------A------------GAGCT...................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAACAGCCGCAGCC.............................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGAAA--------TTAATTTGCAGAAGT............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAGCCGCAAACAGAAGCAA...............................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACTGGAAAATAAAA-----------------------..............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAA---------A------------GAGCTAGAAGT.............................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------A------------GAGCTAGAAGTGATA-------------------------1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACAGAAGCAAA---------A------------GAGCTAGAAGTG............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAACAGAAGCAAA---------A------------GAGCTAGAAGT.............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGCCGCAAACAGAA...................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCCGCAGCCGCAAAC.......................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCCGCAGCCGCAAACAGAAGC.................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAA---------A------------GAGCTAGAAGTGAT..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAACAGCCGCAGCCGC...........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT------------TGATTAA--ATATGTGCCTCAATATTTATTTGAATACTTTAAAGACTAAAAATAATCAAATTAA---TGTA------AATAT-AGCCT------------------------------------------------GCACTATTG---------------------------TATGGTTGGAAAATT--T-----------------------CTAGAGAAGAGCTATTTTGGCATCCCTAG-GATTATCGAAAGTACTATCGAAC-AAAAGTCCGCCCC-------TATGCTTGATAAAGAAA--------TAAATTTGCAGAAGTGAAACAGCCGCAGTCGCAAACAGAAGCAAA---------A------------CAGCTAGAAGCGATT-------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAAA---------A------------CAGCTAGAAGCGAT..........................2311.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAA---------A------------CAGCTAGAAGCG............................1811.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGAAGCAAA---------A------------CAGCTA..................................2011.0010001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAAA---------A------------CAGCTAGAA...............................1911.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGTGAAACAGCCGCAGT..............................................................................2011.0010000100
droYak3
TATTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAATATTATTATTCAATATTTATTAAAAGACTATAAACATCCAAATTAATTTAAATTG---TGTT------AATATAAGCCT-------------------------------------------------ACTTTAAA---------------------------AATGGTTAGAATATA--T-----------------------CTAGATACCAGCTATTATGGCACCTCTAG-GATTATCGAAAGGACTATCGAGC-CAAAGTCCGCCCC-------TATGCTTGATAAAGAAA--------TTAATTTGCAGAAGTGAAACAGCCGCAGCCGCAAACAGCAGCAAA---------T------------TAGCTAGAAGCGATA-------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAAA---------T------------TAGCTAGAAGCGAT..........................2411.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCAGAAGTGAAACAGCC...................................................................................2111.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAA---------T------------TAGCTAGAAGCGAT..........................2111.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---------T------------TAGCTAGAAGCGAC..........................1811.00100100000000
droEug1
TTTCCATTTGGACTCCAAATTTTGGAGGCGATA-----------------------------------------------------AAAAA-------------ATACACGTGGGGCAGTGTTGGGTAATAT-----CCTTGGCAACA------------------------------TATGTAGTTGGCTATAAAATCT---------TTAGCT--------AA-------------------------------------------------------------------------------------------------------------ATCTTCAGGGAAA-----AAGCTGACTGT---CATGTCAAAAAGCTTGGTAAAATTGTGCAATATATTT------------------------------------------------------------------------------TCA--------------------------TTATTCCGAAAAATTTTT-------TTTAGGTTCTTTCATTAAAATAA--------------TGAAATTTTATGAAACAATAAATAC----------------------------------------------------------------------------------------------------------------GTTTATTTATTTTATAAGGTATTGAT---------------------------TGTTGGTATAAAATAAATCATAA---AGT----GTATGCCTACCGTAAATAGCAATCCTGCCACCACTAA-AGATATCGAATCGCTTATCGGGA-CGGAGTCCACCCC-------TAGGCTTGATAAAGAAA--------TTAATTTGCAGAAGTGAAACAGCCGTAGTCGCAAACAGAAGCATA---------A------------CATCTAGAAGCGATA-------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AAATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTAAGCAGTAAATATAA------------------------------------------------------------TT------AGCGTCAGACA-------------------------------------------------AC--------------------------------------------------------------------------AATCGAAATAGCTAGAGTGCTATCACCAA-AGTTATCGAAGG--CCCTCGGAC-CGCTGTCCACCCC-------TATGCCTGATAAAGAAA--------TTAATTTGCAGAAGTGAAACAGCCGCAGCCGCAAACAGGAGCAAA---------G------------CAGATAGAAGCGATA-------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TACAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTTACCATATTTTG--------------------------------------------------------CTTAAGATCTTTTGAAATT----------------------------------------------------------------------------GAAAA-------CAAAATAATAAAA-ATAGTCACTCGAAAATAGCTAACTTGCCATTACCAA-AAGTATCGAAAATCGAATCGGGC-CGGAGTCCACCCC-------TAAGCTTGATAAAGAAATTATCAAAGAAATTTGCAGAAGTGAAACAGCCGCAGCCGCAAACAGAAGTAAA---------T------------CAGCTAGAAGCGATA-------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CTTCCATTTGAA--------------GGTGATA-----------------------------------------------------AAAA-AC-----------ATCCACGTGGGGCTGTGTTGGATAACGCGCTGCCTTCGGTAGTGCTGAGAAACGCTTTGTC----------------------AGCTATCTAGCTATAAAAATGTTCAGTTGGATATCTAAAAACACGATGTCTGCAAAGAATTATAGCTAGCAAGTTATTTCTAAATTAATTCAATAATTTGTTTGAAAATAAGTACGATGTGAAATCTATAATTAAAGTAAGCACTAAACCTTAAAGGTAA-----AAATGGATAGAAAATAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAGAAA-----C------------------------------ATTCTATAATGATTTTAATAA-----------------AAACATTTACATA-ACT------------------------------------------------ATAATTTAACAAGGAAATAAAAAAACG----CT--------------------------------------------GTTTGCACTAGCTAACTTTCCATCACCCG-ATGTATCGACATATTTATCGGGC-CGGAGTCCATCCC-------TATGGTTGATAAAGAAA--------TTAATTTGCAGAAGTGAAGCAGTTGCAGCCGCAAACAGAAGCAAA---------T------------CCTCTAGAAGCGATA-------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CTTCCATTTAAA--------------GGTGATA-----------------------------------------------------AAAA-TC-----------ATCCACGTGGGGCTGTGTTGGACAACGCGATAGCTTTGGTAGTGCTGAAAAACGCCATGTAACCAATA-------AAGCTA-TAGCTATCTAGCTATAAAAAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTACTAATTGCTTAAAAAATAGTTTTTTCGGAAATAAAAATGTA-------------------------TTGGCCTAAAAGTCTATCTAACTCT--------------------------TTGAATTGAATAATTTTAAACAAATTTTGTGCAC-AACAAAAAGAAAA--------------TGGAATTTACAAAAATGGTAGA------------------------------TAATATATTGATTAAATTAA-----------------GAATATTTTGTAA-ACC------------------------------------------------GCCATCAAACATGGAAATGAATAGACCGAATCA--------------------------------------------TTTTGCACTAGCCAAATTGCCATCACCGG-ATATATCGACACATTTATCGGGC-CGTAGTCCACCCC-------TTTGCTTGATAAAGAAA--------TTAATTTGCAGAAGTGAAGCAGCCGCAGCCGCAAACAGAAGCAAA---------G------------CATCTAGAAGAGATA-------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CTTCCATTTGCA--------------GATCTTA-----------------------------------------------------AAAAAAC-----------ATCCACGTGGGGTTGTGTTGGACAATGCTTTTTTAACGGCAGTGCTGAAACACGGTGTGTCCGCTTAACAGCTGGAAGTAAATAGCTATAAAATAT---------TTCGTTAGA-----------------------------------------------------------------------------------------------------------------------------GAAATTGAAAAGAATTCTTT---TTTGACAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAAACCCTTTAACATTTAAGTT-------------------------CACAT-TGTAA---AGTTTTTCAACTTAAAAACAATGAACATGAGCATT-------------AACCAA------------------------AATA---TATGCAAAGTAAAATTTAAAAAAATAATA-GCAGT--CTTGAAACTAGCTAAC-TCCCACAATCGAGAAATATCGAAACGTCTATCGTGC-CGTAGTCCACCCC-------TATGCTTGATAAAGAA------------ATTTGCAGAAGTGAAGCAGCCGCAGTTGCAAACAGAAGCAAA---------A------------CAGCTAGAAGCGATA-------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCAAACAGAAGCGAAAAGCCACTGA------------CAGCGATAAGCGATA-------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGGCTGATAA--AAA--------TTAATTTGCAGAAGTTAAGCAGCCGCCGCCGGAATC-GAAGCT-A---------T------------CAGCCAGAAGCTTTT-------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAAGCAGCCGCCGCCGGAATC-GAAGC.................................................................2811.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCGCCGGAATC-GAAGCT-...............................................................2111.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATC-GAAGCT-A---------T------------CAGCC...................................1911.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATC-GAAGCT-A---------T------------CAGCCAGA................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTGCAGAAGTTAAGCA......................................................................................1911.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGAATC-GAAGCT-A---------T------------CAGCCA..................................2411.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCGGAATC-GAAGCT-A---------T------------........................................2011.001000001
droBip1
TATTTAATTATA--------------TAAATTTATTACCAATAAATAGCTATTTATTACCAATAATGCATACTTTTTGAAATAACAAAAT-ATCAAAGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAT-CGCAT---------------------------------------------------ATTCGA------------------------TATT---TAGGCAAAGAAACA-----------------------AATAACGATAGATACATTTT--TAACCAA-GATTATCGATATTT---TCATTC-TGTTGACAACCCTACAATAATAGGGCTGATAA--AAA--------TTAATTTGCAGAAGTTAAGCAGCCGCCGCCGGAATC-GTAGCTAC-------CAT------------CAGCTTGAAGCTTTT-------------------------SizeHit CountTotal NormTotal
No Reads
dp5
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCGGTTT-------TGTCATTGATAAAGAAAA----AAATAAATTTGCA--AGTTAAGCAGGCGCCACCGCTACCAGCAGCAGC---------AGCAGCAGCAC-------CCCCGCGATA-------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------AGCAGCAGCAC-------CCCCGCGATA-------------------------2511.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AGTTAAGCAGGCGCCACCG............................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------AGCAGCAGCAC-------CCCCGC.............................2111.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACCAGCAGCAGC---------AGCAGC...............................................2130.3310100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCAGCAGCAGC---------AGCAGC...............................................20180.0610100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC---------AGCAGCAGCAC-------CC.................................20190.0510100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCAGCAGC---------AGCAGCAGCA...........................................22200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAGCAGC---------AGCAGCAGCAC-------C..................................23200.0510001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAGCAGCAGC---------AGCAGC...............................................19200.0510100000000
droPer2
A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTCGTTTT-------TGTCATTGATAAAGAAAA----AAATAAATTTGCA--AGTTAAGCAGGCGCCACCGCTACCAGCAGCAGC---------AGCAGCAGCAC-------CCCCGCGATA-------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAGCAGC---------AGCAGCA..............................................18200.051010000
droWil2
CTTCCATTTAAA--------------CGCCGCA-----------------------------------------------------AAAA-ACCAAAACAAAAAACACGTGTAAGACAGGGCTGCCAGAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCGCCGACGCAAATAGAAGCAGG---------AAAACGGG----------CAAAAAGAAA-------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGAAGCAGG---------AAAACGGG----------C..................................2211.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCAGG---------AAAACGGG----------C..................................1811.001000000000001000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGAAGCAGG---------AAAAC................................................1811.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAAGCAGG---------AAAACGGG----------...................................2011.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGCAAATAGAAGCAGG---------.....................................................1911.001000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGG---------AAAACGGG----------CAAAAAG............................1811.001000000000000000010000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGG---------AAAACGGG----------CAAAAA.............................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAAGCAGG---------AAAACGGG----------CA.................................2111.001000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGCAAATAGAAGCAGG---------AAAACGGG----------...................................2711.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCCGCCGACGCAAACAGAAGCAAG---------GAAAAGAGGAAAACGGCTAACAAAGAGC-------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------GAAAAGAGGAAAACGGC....................................1914.004100030
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACAGAAGCAAG---------GAAAAGAGGAA..........................................2511.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAAACGGCTAACAAAGAGC-------------------------2111.001000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG---------GAAAAGAGGAAAACGGC....................................2011.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAG---------GAAAAGAGGAAAACGG.....................................2011.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAAG---------GAAAAGAGGAAAACGGC....................................2511.001000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGAGGAAAACGGCTAACAAA.............................2411.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAG---------GAAAAGAGGAAAACGGC....................................2211.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAG---------GAAAAGAGGAAAACGGC....................................2111.001000001
droGri2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAGCGGCCGCCGACGCAAACACAAGCAAA---------AG-----------AAAAAGGAAGAGAAAAGGGCAACAGATAAGAGATACGCTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAAGAGAAAAGGGCAACAG...............2311.00101
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAGCAAA---------AG-----------AAAAAGGAA...............................2011.00101
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAAGAGAAAAGGGC....................1911.00101

Generated: 05/18/2015 at 05:45 PM