ID:

dsi_23042

 Coordinate:

2r:5610333-5610482 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.3 -28.2 -28.1 -27.8

Flybase annnotation

Antisense to five_prime_UTR [2r_5610008_5610562_-]; Antisense to exon [2r_5609874_5610562_-]

No Repeatable elements found

Sense Strand Reads

ACGTCCTTTCTGGAATTCGCGAGCACCTTTCAATGTCAAATGAAAAACAAGTGAGTGTTGCCACGTCGGCCGCGCTCTTGTTTTGATGTGCCGATCGGTTTGGAGTGTGTGCGAATTTACTGTGTGGGCCGCGTGGAGATGGACTGAAAATCTCCTGCTCCTAGATCGTCTGCACCGGTTGGCAAAAGGACATAAACTGGAATTTTCAAAACGAATTAACCGCCGCTAACGGCATAATTTTATCTCGATG
***************************************************************************************...(((...............(((((.....((.((.((((..(((.((((((.........))))))))).)))).)).)).))))))))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M053
female body
 SRR553488
RT_0-2 hours eggs
 O001
Testis
.............................................................................................................................................................CTCCTAGATCGTCTGCACCGG........................................................................ 21 0 1 4.00 4 1 2 1 0 0 0 0 0 0 0
................................................................................................................................................................CGAGATCGTCGGCACCGGTT...................................................................... 20 2 1 3.00 3 0 3 0 0 0 0 0 0 0 0
.......................................................................................GTGCCGATCGGTTTGGAGTGT.............................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................TCCTAGATCGTCTGCACCGG........................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................CCTAGATCGTCTGCACCGGTTTT.................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........TGGAATTCGCGAGCACCTTTC........................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
........................................................................................................................................................TCCTGCTCCTAGATCGTCTGC............................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGGCAAAAGGACATAAACTGGAA................................................ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CTAGATCGTCTGCACCGGTTT..................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TTGGCAAAAGGACATAAACTGGAA................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................ATCTCCTGCTCCTAGATCGTTT............................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................TGATGGGCCGGTCGGGTTGGA.................................................................................................................................................. 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................GTGGGCCGCGTGGAGATGGTA.......................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................GAAAAACAAGTGAGTGTTGCC............................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................AATTTACTGTGTGGGCCG....................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................CTAGATCGTCTGCACCGGTTG..................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................TGGAGTGTGTGGGAGTATACTG................................................................................................................................ 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................TCCTGCTCCTAGATCGTCTG.............................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGGGAAAAGGACATAAACTG................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................ATGGACTGAAAATCTCCTGCTT.......................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................GTTGCCACGTCGGCCGCGCTTT............................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CTGCTCCTAGATCGTCTGCA............................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................ATCTCCTGCTCCTAGATCGTC................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CTGCTCCTAGATCGTCTGCAC........................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................CTCCTGCTCCTAGATCGTCTG.............................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................TCTCCTGCTCCTAGATCG.................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................CTCCTAGATCGTCTGCACCG......................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................GTGCCGATCGGTTTGGAGT................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................GTGGGCCGCGTGGAGATGGACT......................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................TAGATCGTCTGCACCGGTTGA.................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................TGAGTGTTGCCACGTCGGCCG.................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................TGGGCCGCGTGGAGATGGATTT........................................................................................................ 22 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.................................................................................TGTGATGTGCCGAGCGGTTA..................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
..................................................................................TCGAAGTGCCGATCGGTTT..................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................TGCTCCTAGATCGTCTGCATAT......................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................GTGGACCGCGTGGAGACGG............................................................................................................ 19 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0
.................................................................................TGTGATTTGCCGATCGGT....................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................GAGGCTAACGGCATAAT............ 17 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0
........TCGGGAATTCGGGAGGACC............................................................................................................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................ATGTGCCCTTCGGTTCGGA.................................................................................................................................................. 19 3 16 0.06 1 0 0 0 0 0 0 0 0 1 0
................................................................GTCGGCCTCGATCCTGTTT....................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................ATCGGTTTGGACTGTGCT........................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.................CGAGAGGACCTTTCTATG....................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
...........................................................GCCCCGTCGCCCGCGCTA............................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

##########################################################################################################################################################################################################################################################
TGCAGGAAAGACCTTAAGCGCTCGTGGAAAGTTACAGTTTACTTTTTGTTCACTCACAACGGTGCAGCCGGCGCGAGAACAAAACTACACGGCTAGCCAAACCTCACACACGCTTAAATGACACACCCGGCGCACCTCTACCTGACTTTTAGAGGACGAGGATCTAGCAGACGTGGCCAACCGTTTTCCTGTATTTGACCTTAAAAGTTTTGCTTAATTGGCGGCGATTGCCGTATTAAAATAGAGCTAC
************************************************************************...(((...............(((((.....((.((.((((..(((.((((((.........))))))))).)))).)).)).))))))))*************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
..........................................................................................................................................................GACGAGGATCTAGCAGACGTG........................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0
...........................................................................................................................................................ACGAGGATCTAGCAGACGTG........................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0
....................................................................................TTACACGGCTAGCCAAACCTC................................................................................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0
.........................................................................................................................................................AGACGAGGATCTAGCAGACGTG........................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0
.......................................................................................................................................................TTTGACGAGGATCTAGCAGACGT............................................................................ 23 3 1 2.00 2 2 0 0 0 0 0 0 0
...............AAGCGCTCGTGGAAAGTTACA...................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.............................................................................................................................TCCGGCGCACCTCTACCTGAC........................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................GAGGACGAGGATCTAGCAGAC.............................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................GGCTAGCCAAACCTCACACA............................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
TGCAGGAAAGACCTTAAGCGCTCGT................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................TTTTGCTTAATTGGCGGCGA....................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................................TTTAGAGGACGAGGATCTAGCAGACGT............................................................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................TAGGACGAGGATCTAGCAGA............................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................CTACACGGCTAGCCAAACCTC................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................AGACGTGGCCAACCGTTTTCCTGTATT....................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................................AGAGGACGAGGATCTAGCAGA............................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................CCGGCGCACCTCTACCTGACTTTTA................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................TAGAGGACGAGGATCTAGCAG................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................................TTGGCGCACCTCTACCTGAC........................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................AACTACACGGCTAGCCAAAC.................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................GGACGAGACTCTAGCAG................................................................................ 17 2 11 0.36 4 0 4 0 0 0 0 0 0
.............................................................................................................................................CTGACTTTGAGAGGA.............................................................................................. 15 1 5 0.20 1 0 0 0 0 0 0 1 0
......................................................................................................................................................TTTGGACGAGGATCTAGCAGA............................................................................... 21 3 7 0.14 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................TGGCCAAGAGTGTTCCTGT.......................................................... 19 3 7 0.14 1 0 1 0 0 0 0 0 0
.GCATGAAAGACTCTAAGCG...................................................................................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 1 0
.GCAGGGATGCCCTTAAGC....................................................................................................................................................................................................................................... 18 3 18 0.06 1 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 07:19 PM