ID:

dsi_23026

Coordinate:

3l:7994263-7994412 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7994173_7994262_+]; exon [3l_7994069_7994262_+]; Antisense to three_prime_UTR [3l_7994306_7994355_-]; Antisense to CDS [3l_7994356_7995110_-]; Antisense to exon [3l_7994306_7995110_-]; intron [3l_7994263_7995970_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CGTGGCGCGAGCGCTGGACGGACTCCCAGTGGGGCATCAACATAAAAAAGGCAAGGCAACCCAAGCAAATTAACACACCGAACAATCAATATTCGTGTTTACCAATATATTGTAAATGCAATGAGGCCTGTACATTGAGAATTTTAGGGGTTCAAGTTGCCCGTCTCCGTGCTTTTGGTCTTGGGCTCGAAAACCGGATCCTCTGCCTGGGACAGGGCCAAAACCAGTTGGCGCTGCTTTACGGAGAGAT ************************************************....((((((..................................((((((((.........))))))))..((((.(((.................))).)))).))))))....((((...((((((((...))).)))))..))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	M023 head	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
............................................................................................................................................................................................GAAAACCGGATCCTCTGCCTGGGA......................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0
..............TGGACGGACTCCCAGTGGGGCATCAACA................................................................................................................................................................................................................	28	0	1	1.00	1	0	0	0	1	0	0	0	0
...GGCGCGAGCGCTGGACGGATTT.................................................................................................................................................................................................................................	22	2	1	1.00	1	1	0	0	0	0	0	0	0
...........CGCTGGACGGACTCCCAG.............................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0
................GACGGACTCCCAGTGGGGCAT.....................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0	0	0
.....CGCGAGCGCTGGACGGACTC.................................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................CGAATCCCGCATCCTCTGCC...........................................	20	3	19	0.05	1	0	0	0	0	0	1	0	0
...............................................................................................................................................TTAGGGGTTCGAGTC............................................................................................	15	2	20	0.05	1	0	0	0	0	0	0	0	1
......................................................................................................CAATAGATTGTAAAT.....................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	1	0	0
............................................................................................................................................................................TTTTGGTCTTGGGAT...............................................................	15	1	20	0.05	1	0	0	0	0	0	1	0	0
......................................................................................................................................................TTCAAGTGACCCGTCT....................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	1	0

Anti-sense strand reads

---------------------------------------------------------------------------------------------############################################################################################################################################################# GCACCGCGCTCGCGACCTGCCTGAGGGTCACCCCGTAGTTGTATTTTTTCCGTTCCGTTGGGTTCGTTTAATTGTGTGGCTTGTTAGTTATAAGCACAAATGGTTATATAACATTTACGTTACTCCGGACATGTAACTCTTAAAATCCCCAAGTTCAACGGGCAGAGGCACGAAAACCAGAACCCGAGCTTTTGGCCTAGGAGACGGACCCTGTCCCGGTTTTGGTCAACCGCGACGAAATGCCTCTCTA ************************************************....((((((..................................((((((((.........))))))))..((((.(((.................))).)))).))))))....((((...((((((((...))).)))))..))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M023 head	M024 male body	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
...............................................................................................................CACTCACGTTACTCCAGACAT......................................................................................................................	21	3	2	1.00	2	2	0	0	0	0	0
............................................................................................................................CGGGTCATGTAACTCTTA............................................................................................................	18	2	6	0.17	1	0	1	0	0	0	0
.................................................................................TGTTAGTTATGAGCACTA.......................................................................................................................................................	18	2	7	0.14	1	0	0	1	0	0	0
................................................................................................................................................................GGCAGAGTCACAAACACCAG......................................................................	20	3	9	0.11	1	0	0	0	1	0	0
..............................................................................................................................................................................................TTTGGCCTAGCAGCCTGA..........................................	18	3	20	0.10	2	2	0	0	0	0	0
......................................................................................................................................................AAGTTCAACGTGCAG.....................................................................................	15	1	10	0.10	1	1	0	0	0	0	0
....................................................CTCCGTTGGGTTCGT.......................................................................................................................................................................................	15	1	14	0.07	1	0	0	0	0	1	0
...........GCGACCTGCGTGATGGT..............................................................................................................................................................................................................................	17	2	15	0.07	1	0	0	0	0	0	1

Generated: 04/24/2015 at 10:36 AM