ID:

dsi_23024

Coordinate:

3r:10260584-10260733 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-23.9	-23.9	-23.6

Flybase annnotation

intergenic

No Repeatable elements found

mature

star

Sense Strand Reads

CTTCCAATCCTGTAACTACTGTTGTTCCTGGTTCTCCCGGTTGCCCTAACATCCCTCAATATCCAACAGTGGTTCCGAATAATCCTTCCAATCCTGTAACTACTGTTGTACCTGGTACTCCCGGTTGCCCCAACACTCCTCAATATCCTACAGTGGTTCCGAATAATCCATCTAATCCCAATGTAAATGTTGTTCCTGGTACTCCCGGTTGCCCCAACACTCCTCAATATCCTACAGTGGTTCCGAATAA ************************************************.............(((((((((((.((.................)).))))))))))).(((.((....)).)))...............((((((..((((.(((....((........)).....))).)))).))))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M023 head	M025 embryo	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	M024 male body
........................TCCCTGGTTCTCCCGG..................................................................................................................................................................................................................	16	1	1	1.00	1	1	0	0	0	0	0	0
.......................GTCCCTGGTTCTCCCGG..................................................................................................................................................................................................................	17	1	1	1.00	1	1	0	0	0	0	0	0
.................................................................................ATCCTTCCAATCCTGTAACTACTGTT...............................................................................................................................................	26	0	2	0.50	1	0	0	1	0	0	0	0
...................................................................................CCTTCCAATCCTGTAACTACTGT................................................................................................................................................	23	0	2	0.50	1	0	1	0	0	0	0	0
.......................GTCCCCGGTTCTCCCGGT.................................................................................................................................................................................................................	18	2	5	0.20	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................ACTCCCGGTTGCCGCACCA...............................	19	2	7	0.14	1	0	0	0	1	0	0	0
....................................................................................................................ACTCCCGGTTGCCGCACCA...................................................................................................................	19	2	7	0.14	1	0	0	0	1	0	0	0
.................................................................................................AACGTCTGTTGTACCTG........................................................................................................................................	17	2	10	0.10	1	0	0	0	0	0	1	0
........................................................................................................................................................................................CAACGTTGATCCTGGTAC................................................	18	3	20	0.05	1	0	0	0	0	0	0	1
...................................................TCCCTCAATCTCCACCA......................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	1	0

Anti-sense strand reads

GAAGGTTAGGACATTGATGACAACAAGGACCAAGAGGGCCAACGGGATTGTAGGGAGTTATAGGTTGTCACCAAGGCTTATTAGGAAGGTTAGGACATTGATGACAACATGGACCATGAGGGCCAACGGGGTTGTGAGGAGTTATAGGATGTCACCAAGGCTTATTAGGTAGATTAGGGTTACATTTACAACAAGGACCATGAGGGCCAACGGGGTTGTGAGGAGTTATAGGATGTCACCAAGGCTTATT ************************************************.............(((((((((((.((.................)).))))))))))).(((.((....)).)))...............((((((..((((.(((....((........)).....))).)))).))))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR902008 ovaries
..............................................TTTGTAGGGCGTTATAGGTGG.......................................................................................................................................................................................	21	3	1	3.00	3	3	0	0	0	0
...............................................ATGTTGGGAGTTATAGGTTG.......................................................................................................................................................................................	20	2	1	1.00	1	0	1	0	0	0
.............................................GTTGGTAGGGCGTTATAGGT.........................................................................................................................................................................................	20	3	5	0.60	3	3	0	0	0	0
...................................................AGGGAGACATAGGTTGTCA....................................................................................................................................................................................	19	2	2	0.50	1	0	0	1	0	0
.........................................................TTATAGGTTGGCCCCAAGGAT............................................................................................................................................................................	21	3	4	0.25	1	0	1	0	0	0
...........................GACCAAGAGGGCCTACGT.............................................................................................................................................................................................................	18	2	4	0.25	1	0	1	0	0	0
............................................................................................................................................GTTATAGCATGTCACCAACAC.........................................................................................	21	3	6	0.17	1	0	0	0	1	0
................................................................................................................................................................................................................................GTTATAGCATGTCACCAACAC.....	21	3	6	0.17	1	0	0	0	1	0
.................................................................TGTAACCAAGGCTCATCAG......................................................................................................................................................................	19	3	16	0.06	1	0	0	0	1	0
.....................................................................................................................................................TGTAACCAAGGCTCATCAG..................................................................................	19	3	16	0.06	1	0	0	0	1	0
.....................................................................................................................................................................TAGGTGTATTAGGGTTAC...................................................................	18	2	18	0.06	1	0	0	0	0	1
.............................CCAAGAGGGGCAATGG.............................................................................................................................................................................................................	16	2	19	0.05	1	0	1	0	0	0
.................................................GTAGGGCGTTATAGGTGGG......................................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0
.........................................................................................................................................................ACCAAGGCTGATAAGGTCG..............................................................................	19	3	20	0.05	1	1	0	0	0	0

Generated: 04/24/2015 at 10:45 AM