ID:

dsi_23013

 Coordinate:

2l:5136225-5136440 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [2l_5136441_5136444_+]; CDS [2l_5136445_5136614_+]; five_prime_UTR [2l_5136179_5136224_+]; exon [2l_5136179_5136224_+]; exon [2l_5136441_5136614_+]; intron [2l_5136225_5136440_+]

No Repeatable elements found

Sense Strand Reads

----##############################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAGAAGTTGATTTAGGTTCCATCTCTATCTCAGATTCTGAATTTGCAAATGTGAGTACATAACAAGGTTTTTCTTTAAAAAACACGATTCCAGGGGTTTTGAAACTTAAAAGAAGTAATTAAATATCATACCAGTTGGTCATATCAACTCAATAAGTTGCTTGGGAGAATTCATTAGTAGCTACGCGTTTTATGCCAGCTGCCTTTGAGCACCTTACGTAACTACCGAGCAATATAATTGATTTTTGTGATTTTCATTCTTTTCAGCGACATGGCCAACACTCCAGCCACCTCCTCCGCCGGACCCGTGCTCCGTG
**************************************************(((((..(((((....((((((.....)))))).(((..((...))..)))..((((.....)))).................((((((...))))))(((((..((((((((((((..((((...((((((..((((...)))).))))))...))))...))).........)))))))))...)))))...)))))...))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR902009
testis
................................GATTCTGAATTTGCAAAT.......................................................................................................................................................................................................................................................................... 18 0 1 8.00 8 1 6 0 0 0 0 0 1 0 0 0 0
.................TCCATCTCTATCTCAGATTCTGAATT................................................................................................................................................................................................................................................................................. 26 0 1 7.00 7 0 0 0 1 1 1 1 0 0 3 0 0
.........................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTCCGCCGGACCC.......... 25 0 1 4.00 4 0 0 3 0 0 0 0 0 0 0 0 1
.................................................................................ACACGATTCAAGGGGTTTTGGAACT.................................................................................................................................................................................................................. 25 2 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0
..............................CAGATTCTGAATTTGCAAAT.......................................................................................................................................................................................................................................................................... 20 0 1 3.00 3 1 0 0 0 0 0 0 0 2 0 0 0
.........................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTCCGCCGGACC........... 24 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0
......................CTCTATCTCAGATTCTGAA................................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................TATCTCAGATTCTGAATTTGCAAATCGA....................................................................................................................................................................................................................................................................... 28 3 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0
........................CTATCTCAGATTCTGAATTTGCAAAT.......................................................................................................................................................................................................................................................................... 26 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0
............................CTCAGATTCTGAATTTGCAAAT.......................................................................................................................................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTCCGCCGGAC............ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TGAAACTTAAAGGAA.......................................................................................................................................................................................................... 15 1 20 1.55 31 0 0 0 8 19 2 0 0 0 2 0 0
.................................................................................................TTTGAAACTTAAAAGAAC......................................................................................................................................................................................................... 18 1 2 1.50 3 3 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TATCATTGATTTTTGT.................................................................... 16 1 20 1.15 23 0 0 0 1 4 6 0 0 0 12 0 0
............................CTCAGATTCTGAATTTGC.............................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........TTAGGTTCGATCTCTA................................................................................................................................................................................................................................................................................................. 16 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................TATCTCAGATTCTGAATTT................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................TCTCTATCTCAGATTCTGAA................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................CGCCGGACCCGTGCTCCGT. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................AATTTGCAAATGTGAG..................................................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
................TTCCATCTCTATCTCAGATTCTGAATT................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................TCTCTATCTCAAATTCTGAATTTGC.............................................................................................................................................................................................................................................................................. 25 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TATAATTGATTTTTGTGTTT................................................................ 20 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
....AGTTGATTTAGGTTCCATCTC................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TTCCAGGGGTTTTGAAACTTAAAAAA........................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................CCAGGGTTTTCGGAACTTAAAAGA........................................................................................................................................................................................................... 24 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................CATCTCTATCTCAAATTCTGAATT................................................................................................................................................................................................................................................................................. 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................TCTTTTCAGCGACATGGC......................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.....GTTGATTTAGGTTCCATCTCTATCTC............................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................CTCTATCTCAGATTCTGAAT.................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................CTCCTCCGCCGGACCAGTGCTC.... 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................CAGCCACCTCCTCCGCCGGACCCGTGCAA.... 29 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................AACACTCCAGCCACCTCCTCCGCCGGA............. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........ATTTAGGTTCCATCTCTATCTCAGA.......................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................ACCTCCTCCGCCGGCCCCGTGC...... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
............TAGGTTCCATCTCTATCTCAGATTC....................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................CTGAATTTGCAAATGTGAGTA................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................AATCGACATGGCCAACACTCCAGCCACC......................... 28 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................TCTCTATCTCAGATTCTGAAT.................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................ATCGACATGGCCAACACTC................................. 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................TCCTCCGCCGGACCCGTGCTCC... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................TCTATCTCAGATTCTGAA................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTCCGCCGGACG........... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................CCTCCGCCGGACCCGTGCTCCGT. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................................................................CAACACTCAAGCCACCTCCTC.................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...................CATCTCTATCTCAGATTCTGAA................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................CACCTCCTCCGCCGGACCCGTG....... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................ATCTCTATCTCAGATTCTGAA................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................AGCCACCTCCTCCGCCGGACCCGTGC...... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................TATAATTGATTTTTGTGT.................................................................. 18 1 4 0.75 3 0 0 0 0 0 0 3 0 0 0 0 0
........................................ATTTGCAAATGTGAG..................................................................................................................................................................................................................................................................... 15 0 4 0.50 2 0 0 0 0 0 0 0 0 2 0 0 0
........................................................................................................................................................................................................................................TATCATTGATTTTTGTGA.................................................................. 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................TCGACATGGCCAACACTC................................. 18 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
................................GATTCTGAATTTGCAAATC......................................................................................................................................................................................................................................................................... 19 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................ATTATCATTGATTTTTGTGATT................................................................ 22 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................ATTATCATTGATTTTTGTGA.................................................................. 20 2 9 0.33 3 0 0 0 0 3 0 0 0 0 0 0 0
.....................................TCAATTTGCAAATGTGAG..................................................................................................................................................................................................................................................................... 18 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................AATTTGTAAATGTGAGT.................................................................................................................................................................................................................................................................... 17 1 7 0.29 2 0 0 0 0 0 0 0 0 2 0 0 0
......................................................................................................................................................................................................................................AGTATCATTGATTTTTGTG................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................AATATCATTGATTTTTGT.................................................................... 18 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................CAATTTGCAAATGTGAG..................................................................................................................................................................................................................................................................... 17 1 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................ATTATAATTGATTTTTGTGT.................................................................. 20 2 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GACATGGCCCACACT.................................. 15 1 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................CCAGCCTTCTCCGCCGCCGGA............. 21 3 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................TCATTAGTTGCTACGCA................................................................................................................................. 17 2 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................TCGGAGAATTCTCTAGTAG........................................................................................................................................ 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................................AATTTGAAAATGTGAG..................................................................................................................................................................................................................................................................... 16 1 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................TGAATTTGTTAATGTGAG..................................................................................................................................................................................................................................................................... 18 2 16 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................TTGAAACTTAAAGGAA.......................................................................................................................................................................................................... 16 1 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................TTTGAAACTTAAAAAAA.......................................................................................................................................................................................................... 17 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................TCATTAGTTGCTACGA.................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................TTATCATTGATTTTTGTGA.................................................................. 19 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................ACTATCATTGATTTTTGT.................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................TTATAATTGATTTTTGTGT.................................................................. 19 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

ATCTTCAACTAAATCCAAGGTAGAGATAGAGTCTAAGACTTAAACGTTTACACTCATGTATTGTTCCAAAAAGAAATTTTTTGTGCTAAGGTCCCCAAAACTTTGAATTTTCTTCATTAATTTATAGTATGGTCAACCAGTATAGTTGAGTTATTCAACGAACCCTCTTAAGTAATCATCGATGCGCAAAATACGGTCGACGGAAACTCGTGGAATGCATTGATGGCTCGTTATATTAACTAAAAACACTAAAAGTAAGAAAAGTCGCTGTACCGGTTGTGAGGTCGGTGGAGGAGGCGGCCTGGGCACGAGGCAC
**************************************************(((((..(((((....((((((.....)))))).(((..((...))..)))..((((.....)))).................((((((...))))))(((((..((((((((((((..((((...((((((..((((...)))).))))))...))))...))).........)))))))))...)))))...)))))...))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...........................AGAGTCTAAGACTTACA................................................................................................................................................................................................................................................................................ 17 1 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................................................GGATGGCTCGTTATATTAACTA.......................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................................TCGATGGCTCGTTATAGTA.............................................................................. 19 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TGTCGGTGGAGGAGGCGGC............... 19 1 2 0.50 1 0 0 0 1 0 0
.......................................................................AGAAGTTCTTTGTGCTAAGCT................................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 1 0 0 0
............................................................................................................................................................................................................................................................................................TCGGTGGAAGGGGCGGCC.............. 18 2 9 0.22 2 0 0 2 0 0 0
............................................................................................................................................................................................................................................................................................TCGGTGGAAGGGGCGGCCCG............ 20 3 5 0.20 1 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................CCGGTTGTGAGGTCCTTG.......................... 18 2 7 0.14 1 0 0 1 0 0 0
..............................................................................................................................................................................................................CTCGTGGACTGCATTAA............................................................................................. 17 2 9 0.11 1 0 1 0 0 0 0
...................................................................................................................................................................................................................GGTATGCATCGATGGGTCG...................................................................................... 19 3 10 0.10 1 1 0 0 0 0 0
.................................................................................................................................................................AGCCTCTTAAGAGATCATC........................................................................................................................................ 19 3 13 0.08 1 0 0 0 0 1 0
.......................................................................................................................................ACCAGTATAGTCGAG...................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................AAAGTAGCAGTACCGGTT...................................... 18 2 17 0.06 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................CGGTGGAAGGGGCGGCC.............. 17 2 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:5136175-5136490 + dsi_23013 TAGAAGTTGATTTAGGTTCCATCTC-----------T-----ATCTCAGA----TTCTGAA------TTT-GCAAATGTGAGTACATAACAAGGTTTTTC-------------------------TT-----TA-A-AAAACACGATTCCAG---GGGTTT--TGAAACTT-AAAAGAAGTAAT-TAAA-TATCATACCAGTTGGTCATATC--A-ACTCAATAAGTTGCTTGGGAGAATT-------CATTAGTAGCTA--CGCGTTTTATGCCAGCTGCCTTTGAGCACCTTACGTAACTAC-----CGAGCAATATAATTGATTTT--TG--TGATTTT-CAT--TCTT---------T---TCA----------------GCGACATGGCCAACACTCCAGCCACCTCCTC---------CGCCGGACCCGTGCTCCGTG
droSec2 scaffold_5:3406381-3406696 + TAGAAGTTGATTTAGGTTCCATCTC-----------T-----ATCGCAGA----TTCTGAA------TTT-GCAAATGTGAGTACATAACAAGGTTTTTC-------------------------TT-----TA-A-AAAACACGATACAAG---GGGTTT--TGGAATTT-AAAAGAAGTAAA-TAAA-TATCATACCAGTTGGTCATATC--A-ACTCAATAAGTTGCTTGGGAGAATT-------CATTAGTAGCTA--CGCGTTTTATGCCAGCTGCCTTTGAGCACCTTACGTAACTAC-----CGAGCAATATAATTGATTTT--TG--TGATTTT-CAT--TCTT---------T---TCA----------------GCGACATGGCCAACACTCCAGCCACCTCCTC---------TGCCGGACCCGTGCTCCGTG
dm3 chr2L:5327237-5327552 + TAGAATTTGTTTTAGGTTCCATCTC-----------T-----ATCTCAGA----TTCTGAA------TTT-GCAAATGTGAGTACATAACAAGGTTTTTC-------------------------TT-----TA-A-AAAACACGGTTCAAG---GGGTTT--TGGAACTT-AAAAAAAGTAAT-TAAA-TATCATACCAGTTGGCCATATC--A-ACTCCATAAATTTCTGGGGAGAATT-------CATTAGTTGCTA--TGCGTTTAATGGCAGCTGCCTTTGAGCACCTTACGTAACTAC-----CGAGCAATATAATTGATTTT--TG--TGATTTT-CAT--TCTT---------T---TCA----------------GCGACATGGCCAACACTCCAGCCACCTCCTC---------TGCCGGACCCGTGCTCCGTG
droEre2 scaffold_4929:5409097-5409414 + TAGAACTTGAGTTAGGTTCCATCTC-----------T-----ATCTCTGA----TTCTGAA------ATT-GCAAATGTGAGTACATAACAAGGTTTTTC-------------------------TT-----TAAT-AAAACAAGTTTCAA----GGGTTT-TTGGACTAC-AAATAAAGTAAT-TGTA-TACCACATTGGCAGACCATATT--A-AGTTCATAAGTTGCTGGGGAGAATT-------AAGTAGTTGCTA--TGCGTTTTATGACAGCTGCCTTTGAGCACCTTACGTAACTAC-----CGAGCAATATAATTGATTTT--TG--TGATTTTTCAT--CCTT---------T---TCA----------------GCATTATGGCCAACACTCCAGCCACCTCCTC---------TGCCGGACCCGTGCTCCGTG
droYak3 2L:13869793-13870109 - TAGAAGGTGAATTTGGTTCCATCTC-----------T-----ATCTCAGA----TTCTGAA------ATT-GCAAATGTGAGTACATAACAAGGTTTTC--------------------------TT-----TAAT-AAAACCAAATTCAA----GGGTTT--TGGACAGC-CAAAAAAGTAAA-TCAA-GATCATGCTGATTGACCATATT--A-TCTTAAAAAGTAGCTGGGAAGAATT-------CTGTAGTTGCTA--TGCGTTTTATTTCAACTGCCTTTGAGCACCTTACGTAACTAC-----CGAGCAATAGAATTGATTTAGAAG--TGATTTT-CAT--TCTT---------T---TCA----------------GCGACATGGCCAACACTCCAGCCACCTCCTC---------TGCCGGACCCGTGCTCCGTG
droEug1 scf7180000409005:1230668-1230981 + T-----TCGATTTTTGTTCCATCTC-----------T-----ATCTGTGAATAATTCTGC-------TCT-GCAAATGTGAGTACATAACATGGTTTTTA-------------------------GT----TTT-T-AATATTGCTTACAAA---GGGTTT-TCTG-ATTA-AAACAAAGTAAT-TAAA-TATTAAACTTGATGCCCTTCAG--A-ACTTATTTAGTTGCTGACAGGCGC--------AGATAGTTTTTA--AGTGTTTTCTGGCAACTGCCTTTGAGGGCCTTACGTAACTAC-----CGAGCGATATAATTGATTTT--TTTTTAATTTT---G--TCCT---------T---ATA----------------GCGACATGGCCAACACTCCAGCAACCTCCTC---------CGCCGGACCCGTGCTGCGTG
droBia1 scf7180000302261:776947-777263 + AGGGAATAGATTTTTGTTCCATCTC-----------T-----ATATCTG-----TTCTGAA------ATTTGC-AATGTGAGTACATAACAAGGTTTTTT-------------------------CT----TTT-T-AACACAATTTCCAAA---GGGTTT-TCCG-ACCTAAAGAAAGGCAAT-TAAT-CCTTGTAATAAGTGACATTAAC--T-ATTACACTAGTTGCTAGCAGGAGTT-------TA-TCCTTTTTA--AGTGTTTTCTGGCAACTGCCTCTGCAGACCTTACGTAACTGC-----CCAGCAATATTTGTGATTTT--TG--TGATTCACTTT--TCCT---------T---ACA----------------GCGACATGGCCAACACTCCCGCCACCTCCAG---------CGCCGGACCCGTGCTCCGTG
droTak1 scf7180000415704:178345-178654 - AGG-------TTTTTCACCCATCAC-----------T-----ATCTCTGA----TTCTGAA------ATTTGC-AATGTGAGTACATAACAAGAATTTTC-------------------------TT-----TTTT-AGAACCATTTACAAG---GGGATT-TTTG-A-TA-GAAAAAAGTAAT-TAAG-CAATGTTATTAGTAGGCTTATC--T-ACTTAGTTAGTTTCTATCGAGAACT-------TAAACCCTTTCA--AGTGATTTCTGGCCACTACCTTTATAGACCTTACGTAACTGC-----CCAGCAATATAATATAATA---AT--TGATTTTTC-TTCACTT---------T---ACA----------------GCGACATGGCCAACACTCCAGCAACCTCCAA---------CGTGGGACCCGTGCTCCGTG
droEle1 scf7180000491338:155308-155605 + C-------------------ACCTC-----------T-----ATCTCTGA------CAAAT------TCT-GCAAATGTGAGTACATAACAAGGTTTTTC-------------------------GT-----TT-T-AAAACCATTTCTAAA---GGGTTTTTTGGAATTA-TTGTAGAGTAAT-TTGT-TGATTTTCTTCGATCCCCTAAA--T-AGTTAAACAGTTGGCAGAAGCGACG-------CAACAGTTTTTA--TACGTTTTCTGCCAACTGCCTTTAAACCCCTTACGTAACTAC-----AGAACAATATAATCGATTTG--AG--TGGTTTT------TCCT-----------TAGCA----------------GCAAGATGACCAACGCTCCAGCAACCTCC------AGTGTGGCAGGACCCGTGCTCCGTG
droRho1 scf7180000767806:3932-4261 - TAAACATCGTTATTTGTTCCAGCTC-----------TTCTACATCTCTGA------CAAAT------TCT-ACAAATGTGAGTACATAACAAGGTTTTTC-------------------------TT-----TT-T-AAAACGGATTCTAAA---GGGTTT-ATTT-ATTAAGTAAAGAGTGAT-TTAT-CATTTTTATTGGTGCCTTTTGA--T-AGGTGAATAGTTCGTAGAAGCAACC-------AATCAGTTTTTA--ATAGTTTTCTGCCAACTGCCTTTGCAGACCTTACGTAACTACACTACAGAGAACTATAATTGACTTT--TG--TGTTTTTTTAT--TCCT-----------CGGCA----------------GCAACATGGCCAACACTCCAGCAACATCC------AGTGTCGCAGGACCCGTGCTCCGTG
droFic1 scf7180000453842:915011-915321 - CAGACATCAGTCATAGTTGCATCTC-----------T-----ATCTCTGA------CAAAT------TCT-GCAAATGTGAGTACATAATAAGGTTTTAA-------------------------AA-----TT-TAAAAAGAAATATCTAT-C-TGAATT-C-TT-ATTA-TTTCATCGTAAT-TTGG-CATTGTAAAGAAAGCGCTTGGC--A-A-TTAGTTAGGTGCCAGAAACAAAC-------TAATCGTTTTCA--TTTGTTTTGGGCAACTTGCCTA--CGAACCTTACGTAACTAC-----CGTGCAAAATAATTGAGTTC--TG--CGATTTT-C-T--TCCT---------T---TTA----------------GCGTCATGGCCAACACTCCAGCAACCTCCAG---------CGCAGGACCCGTGCTCCGTG
droKik1 scf7180000302643:519744-520061 - CAAAAATTGCATCTGGCAACACTCA-----------T-----CTCTGAGG----CACTGAA-TATTTTCT-GCAAATGTGAGTACATAACT-----TTAC-------------------------CC-----TT-T-TAAACAATTTGCAGA---CTATT--TTGGAG--T-AACACAAGTACT-TATTACATTTTAAAAACAGCCCCTAGCGACAG-CTGATT-ATCGCGGGCGACTGTC-------CTACC--CTTTAACCCTGTTCTAAGCCAACCCCCTTCGAGCACCTTACGTAACTGG-----TTAAATTCTCATTTAATTCC--TT--CGATTTT-T-C--CCAC------------AGCA----------------GCGACATGGCCAATCCTCCAGCAACCTCC------AGCAGCGCCGGACCCGTGCTCCGCG
droAna3 scaffold_12916:9832323-9832437 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTAAGAACCTTACGTAACTGA-----TGACCAATACAGTACAATTT--CC--TTATTTT--------TT---------TGCAGAA----------------ACGACATGGCCAACACACCAGCAACCTCC------AGCAGCGCCGGCCCTGTGCTCCGTG
droBip1 scf7180000396580:1197284-1197593 + TG-----TGATTGAAGTTCCATCCC-----------T-----GGCAATT---------GACTATTTTTCT-GCA-ATGTGAGTACATAACCGAAATTAC--------------------------CT-----TA----AAACCCTATCTATATTTGAGTTT-TTGGAC--C-AATAAATGTACATTGAC-CAGAATTTCTACTGCCTTTATC--T-AACAAACAAGTGTC-AACATTTTTTGACATTTCTTTCGTTGC---------TTTGTTACACCTTCCT-TAAGAACCTTACGTAACTGA-----TGACCAATACAATACAAATG--TT--TTATTTT--------TT---------TGCAGAA----------------ACGACATGGCTAACACTCCAGCAACCTCC------AGCAGCGCCGGCCCTGTGCTCCGTG
dp5 4_group3:7149086-7149404 + AAG---TTCATTACGGTTCCGTATATATTTTATCGAT-----ATCTCCAG-----TC-GAA-ATTTTTCT-GCAAATGTGAGT----------GTTTTTCTTTTTAGATTTCAATAACTATTTAAAAAGGGT-C-TAAAAAGAC--------------------------------------CT-TTAA-TTTGATTTAAATTC-TCATTTA--A-TAGCAAGCTATTGGTGGGCATAATG-------CTGCTAGTGCTA--C-AGCACTGCGCAAAATGGCACTGCGAAAATTACGTAACTGA-----CGTCCAATACAAATACTTTT--TC---------------TCCTTACAGCC-----AGTC----------------GAAAGATGACCAACGCTCCAGCAACCTCCGCCGCCAGCGCCGCCGGCCCAGTCCTGCGTG
droPer2 scaffold_1:8596313-8596631 + AAG---TTCATTACGGTTCCGTATATATTTTATCGAT-----ATCTCCAG-----TC-GAA-ATTTTTCT-GCAAATGTGAGT----------GTTTTTCTTTTTAGATTTCAATAACTATTTAAAAAGAGT-C-TAAAAAGAC--------------------------------------CT-TTAA-TTTGATTTAAATTC-TCATTTA--A-TAGCAAGCTATTGGTGGGCATAATG-------CTGCTAGTGCTA--C-AGCACTGCGCTAAATGGCACTGCGAAAATTACGTAACTGA-----CGTCCAATACAAATACTTTT--TC---------------TCCTTACAGCC-----AGTC----------------GAAAGATGACCAACGCTCCAGCAACCTCCGCCGCCAGCGCCGCCGGCCCAGTCCTGCGTG
droWil2 scf2_1100000004945:422431-422518 - ACGTAAT----TTAATTTCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTGTCT--TCCT---------T---GCA----------------GA-CCATGGCCAACACTCCAGCAACAACA------AGCAGCGCAGGACCCGTCCTCCGTG
droVir3 scaffold_12963:14455312-14455409 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATAACAAC-----TGACCAGTGAAAAT---T--------TGATTTA-C-----------AGTC----CAACA----------------ATAATATGGCCAACACTCCAGCAACCTCC------AGCAGCGCCGGCCCCGTGCTGCGCG
droMoj3 scaffold_6500:15407620-15407721 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATAACAAC-----TGACCAATGAAAAT---T--------T------------TACTTACAGTTACCGTAACA----------------TTAACATGGCCAACACTCCAGCTACCTCC------AGCAGCGCCGGACCCGTCCTGCGTG
droGri2 scaffold_15126:1485242-1485359 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATAACAGC-----TGACCAGCGAAAAT---T--------TTT-----G--TGTATTTACAGTC-----AGTCAATCAATCGTAATATTGAAATATGGCCAACACTCCAGCAACATCC------AGCGCCGCCGGTCCCGTTCTCCGTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAGAAGTTGATTTAGGTTCCATCTC-----------T-----ATCTCAGA----TTCTGAA------TTT-GCAAATGTGAGTACATAACAAGGTTTTTC-------------------------TT-----TA-A-AAAACACGATTCCAG---GGGTTT--TGAAACTT-AAAAGAAGTAAT-TAAA-TATCATACCAGTTGGTCATATC--A-ACTCAATAAGTTGCTTGGGAGAATT-------CATTAGTAGCTA--CGCGTTTTATGCCAGCTGCCTTTGAGCACCTTACGTAACTAC-----CGAGCAATATAATTGATTTT--TG--TGATTTT-CAT--TCTT---------T---TCA----------------GCGACATGGCCAACACTCCAGCCACCTCCTC---------CGCCGGACCCGTGCTCCGTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................GA----TTCTGAA------TTT-GCAAAT...............................................................................................................................................................................................................................................................................................................................................................................1818.00816100000000000000
.................TCCATCTC-----------T-----ATCTCAGA----TTCTGAA------TT.......................................................................................................................................................................................................................................................................................................................................................................................2617.00700010011310000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTC---------CGCCGGACCC..........2514.00400000000000031000
..............................................CAGA----TTCTGAA------TTT-GCAAAT...............................................................................................................................................................................................................................................................................................................................................................................2013.00300100000002000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTC---------CGCCGGACC...........2413.00300000000000030000
......................CTC-----------T-----ATCTCAGA----TTCTGAA------.........................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
....................................T-----ATCTCAGA----TTCTGAA------TTT-GCAAATCGA............................................................................................................................................................................................................................................................................................................................................................................2812.00200000001010000000
........................C-----------T-----ATCTCAGA----TTCTGAA------TTT-GCAAAT...............................................................................................................................................................................................................................................................................................................................................................................2612.00201010000000000000
............................................CTCAGA----TTCTGAA------TTT-GCAAAT...............................................................................................................................................................................................................................................................................................................................................................................2212.00200200000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTC---------CGCCGGAC............2312.00200200000000000000
...............................................................................................................................................................TT--TGAAACTT-AAAAGAAC........................................................................................................................................................................................................................................................................1821.50300300000000000000
............................................CTCAGA----TTCTGAA------TTT-GC...................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
....................................T-----ATCTCAGA----TTCTGAA------TTT-.....................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000000000
.....................TCTC-----------T-----ATCTCAGA----TTCTGAA------.........................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGACCCGTGCTCCGT.1911.00101000000000000000
...........................................................AA------TTT-GCAAATGTGAG..........................................................................................................................................................................................................................................................................................................................................................................1611.00100000000001000000
................TTCCATCTC-----------T-----ATCTCAGA----TTCTGAA------TT.......................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
....AGTTGATTTAGGTTCCATCTC-----------........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................TCTT---------T---TCA----------------GCGACATGGC..................................................1811.00110000000000000000
.....GTTGATTTAGGTTCCATCTC-----------T-----ATCTC.............................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
......................CTC-----------T-----ATCTCAGA----TTCTGAA------T........................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCACCTCCTC---------CGCCGGACCCGTGCAA....2911.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACTCCAGCCACCTCCTC---------CGCCGGA.............2711.00100000001000000000
.........ATTTAGGTTCCATCTC-----------T-----ATCTCAGA----......................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
............TAGGTTCCATCTC-----------T-----ATCTCAGA----TTC...................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
........................................................CTGAA------TTT-GCAAATGTGAGTA........................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.....................TCTC-----------T-----ATCTCAGA----TTCTGAA------T........................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCCTC---------CGCCGGACCCGTGCTCC...2211.00110000000000000000
.......................TC-----------T-----ATCTCAGA----TTCTGAA------.........................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTC---------CGCCGGACG...........2411.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCTC---------CGCCGGACCCGTGCTCCGT.2311.00100000000000100000
...................CATCTC-----------T-----ATCTCAGA----TTCTGAA------.........................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCTC---------CGCCGGACCCGTG.......2211.00100000000000010000
....................ATCTC-----------T-----ATCTCAGA----TTCTGAA------.........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACCTCCTC---------CGCCGGACCCGTGC......2611.00100000000000100000
............................................................................................................................................................................................................................................................................................................................TATAATTGATTTT--TG--TGT..........................................................................................................1840.75300030000000000000
............................................................A------TTT-GCAAATGTGAG..........................................................................................................................................................................................................................................................................................................................................................................1540.50200000000002000000
................................................GA----TTCTGAA------TTT-GCAAATC..............................................................................................................................................................................................................................................................................................................................................................................1920.50100010000000000000
droSec2
TAGAAGTTGATTTAGGTTCCATCTC-----------T-----ATCGCAGA----TTCTGAA------TTT-GCAAATGTGAGTACATAACAAGGTTTTTC-------------------------TT-----TA-A-AAAACACGATACAAG---GGGTTT--TGGAATTT-AAAAGAAGTAAA-TAAA-TATCATACCAGTTGGTCATATC--A-ACTCAATAAGTTGCTTGGGAGAATT-------CATTAGTAGCTA--CGCGTTTTATGCCAGCTGCCTTTGAGCACCTTACGTAACTAC-----CGAGCAATATAATTGATTTT--TG--TGATTTT-CAT--TCTT---------T---TCA----------------GCGACATGGCCAACACTCCAGCCACCTCCTC---------TGCCGGACCCGTGCTCCGTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................C---------TGCCGGACCCGTGCTCCGT.2017.0070070
................................................GA----TTCTGAA------TTT-GCAAAT...............................................................................................................................................................................................................................................................................................................................................................................1816.0060060
............................................................................................................................................................................................................................................................................................................................................................................................................................CTC---------TGCCGGACCCGTGCTCCGT.2213.0030030
.............................................................................................................................................................................................................................................................................................................................................................................................................................TC---------TGCCGGACCCGTGCTCCGT.2112.0020020
.................................................................................................................................................................................................................................................................CTA--CGCGTTTTATGCCAGCTGCCTTT...............................................................................................................................................................2612.0020020
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCCTC---------TGCCGGACCCG.........1912.0020020
..........................................................................................................................................AAACACGATACAAG---GGGTTT--TGGA.....................................................................................................................................................................................................................................................................................2411.0010010
...AAGTTGATTTAGGTTCCATCTC-----------T-----ATCG..............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
....AGTTGATTTAGGTTCCATCT....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCCTC---------TGCCGGACCC..........1811.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................CCACCTCCTC---------TGCCGGACCCGTGCT.....2511.0010010
................................................................................................TTTC-------------------------TT-----TA-A-AAAACACGATACAAG---.................................................................................................................................................................................................................................................................................................2411.0011000
...................................................................................................C-------------------------TT-----TA-A-AAAACACGATACAAG---GGGT.............................................................................................................................................................................................................................................................................................2511.0011000
.....GTTGATTTAGGTTCCATCTC-----------T-----ATC...............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
.....................TCTC-----------T-----ATCGCAGA----TTCTGAA------.........................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.............AGGTTCCATCTC-----------T-----ATCGCAGA----TTCTGAA------T........................................................................................................................................................................................................................................................................................................................................................................................2911.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCACCTCCTC---------TGCCGG..............1911.0011000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTC---------TGCCGGACCCG.........2611.0011000
............................................................................................................................................ACACGATACAAG---GGGTTT--TGGA.....................................................................................................................................................................................................................................................................................2211.0010010
............................................................................................................................................ACACGATACAAG---GGGTTT--TGGAA....................................................................................................................................................................................................................................................................................2311.0010100
..........................................ATCGCAGA----TTCTGAA------TTT-GCA..................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................CACTCCAGCCACCTCCTC---------TGCCG...............2311.0011000
.....................................................................................................................................................AAG---GGGTTT--TGGAATTT-AAAAGA..........................................................................................................................................................................................................................................................................2311.0011000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTC---------TGCCG...............2011.0010010
.................................................A----TTCTGAA------TTT-GCAAATGTGAG..........................................................................................................................................................................................................................................................................................................................................................................2211.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGGACCCGTGCTCCGT.1911.0010010
..............................................................................................................................................ACGATACAAG---GGGTTT--TGGA.....................................................................................................................................................................................................................................................................................2011.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCTC---------TGCCGGACCCGTG.......2211.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................ACACTCCAGCCACCTCCTC---------....................1911.0011000
..............GGTTCCATCTC-----------T-----ATCGCAGA----TTCTGA................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
.....................................................................................................................................................AAG---GGGTTT--TGGAATTT-AAAAGAACG.......................................................................................................................................................................................................................................................................2611.0010100
..........................................................................................................................................AAACACGATACAAG---GGGTTT--TG.......................................................................................................................................................................................................................................................................................2211.0011000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TC---------TGCCGGACCCGTGCTC....1811.0010010
................................................................................................TTTC-------------------------TT-----TA-A-AAAACACGATACAAG---GGG..............................................................................................................................................................................................................................................................................................2711.0010010
.............................................................................................................................TT-----TA-A-AAAACACGATACAAG---GGGT.............................................................................................................................................................................................................................................................................................2411.0010010
..........TTTAGGTTCCATCTC-----------T-----ATCGCA............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
......TTGATTTAGGTTCCATCTC-----------T-----ATCGCA............................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCCTC---------TGCCGGACCCGTG.......1811.0010010
..............................................................................................................................T-----TA-A-AAAACACGATACAAG---GG...............................................................................................................................................................................................................................................................................................2111.0010010
..........TTTAGGTTCCATCTC-----------T-----ATCGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.............AGGTTCCATCTC-----------T-----ATCGCAGA----......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.......................................................TCTGAA------TTT-GCAAATGTGAG..........................................................................................................................................................................................................................................................................................................................................................................2011.0010001
....AGTTGATTTAGGTTCCATCTC-----------T-----AT................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
.......................................................................................................................................................................................A-TAAA-TATCATACCAGTTGGTC.............................................................................................................................................................................................................................................2211.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................CCACCTCCTC---------TGCCGGACCC..........2011.0010010
dm3
TAGAATTTGTTTTAGGTTCCATCTC-----------T-----ATCTCAGA----TTCTGAA------TTT-GCAAATGTGAGTACATAACAAGGTTTTTC-------------------------TT-----TA-A-AAAACACGGTTCAAG---GGGTTT--TGGAACTT-AAAAAAAGTAAT-TAAA-TATCATACCAGTTGGCCATATC--A-ACTCCATAAATTTCTGGGGAGAATT-------CATTAGTTGCTA--TGCGTTTAATGGCAGCTGCCTTTGAGCACCTTACGTAACTAC-----CGAGCAATATAATTGATTTT--TG--TGATTTT-CAT--TCTT---------T---TCA----------------GCGACATGGCCAACACTCCAGCCACCTCCTC---------TGCCGGACCCGTGCTCCGTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................G---GGGTTT--TGGAACTT-AAA.............................................................................................................................................................................................................................................................................18110.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GAATTTGTTTTAGGTTCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................1919.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001200000100000000000300000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GGCCAACACTCCAGCCACC..................................1919.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001500000010000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAACACTCCAGCCACC..................................2018.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000020000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCCACCTCCTC---------TGCCG...............1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAACACTCCAGCCA....................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CATGGCCAACACTCCAGCCACCTCC...............................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200200000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACTCCAGCCACCTCCTC---------TGCCGGA.............2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CTC---------TGCCGGACCCGTGCTCCGT.2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101100000000000000000000000000
..........................................................................................................................................AAACACGGTTCAAG---GGGT.............................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002011000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TTT-CAT--TCTT---------T---TCA----------------GCGACA......................................................2015.0050000000000000000000000000000000000000000000000000000000003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GAATTTGTTTTAGGTTCCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAACACTCCAGCCACCTCC...............................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGAATTTGTTTTAGGTTCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000101001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTC---------TGCCGGACCCG.........2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TTTTAGGTTCCATCTC-----------T-----ATCTCAGA----TT....................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCCACCTCCTC---------TGCCGGACCCG.........2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CACTCCAGCCACCTCCTC---------TGCCGGA.............2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................GA----TTCTGAA------TTT-GCAAAT...............................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCTCCTC---------TGCCGGACC...........2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................AATGTGAGTACATAACAAGG..............................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000010000000000000000
..........................................ATCTCAGA----TTCTGAA------TTT-GC...................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................................................................................................................................................................................................................................................................................................................................................ACATGGCCAACACTCCAGC......................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACTCCAGCCACCTCCTC---------TGCC................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCCTC---------TGCCGGACCCGT........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GGCCAACACTCCAGCCACCTCCTC---------TGCC................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCCACCTCCTC---------TGCCGGACCC..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCCACCTCCTC---------TGCCGGACCCGTGC......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TCAGA----TTCTGAA------TTT-GCA..................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................C-----------T-----ATCTCAGA----TTCTGAA------TTT-GC...................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................AAAACACGGTTCAAG---GGGTTT--TGGA.....................................................................................................................................................................................................................................................................................2511.0010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................ACCTTACGTAACTAC-----CGAG...................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CTC-----------T-----ATCTCAGA----TTCTGAA------TTT-GCA..................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................AAG---GGGTTT--TGGAACTT-AAAA............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droEre2
TAGAACTTGAGTTAGGTTCCATCTC-----------T-----ATCTCTGA----TTCTGAA------ATT-GCAAATGTGAGTACATAACAAGGTTTTTC-------------------------TT-----TAAT-AAAACAAGTTTCAA----GGGTTT-TTGGACTAC-AAATAAAGTAAT-TGTA-TACCACATTGGCAGACCATATT--A-AGTTCATAAGTTGCTGGGGAGAATT-------AAGTAGTTGCTA--TGCGTTTTATGACAGCTGCCTTTGAGCACCTTACGTAACTAC-----CGAGCAATATAATTGATTTT--TG--TGATTTTTCAT--CCTT---------T---TCA----------------GCATTATGGCCAACACTCCAGCCACCTCCTC---------TGCCGGACCCGTGCTCCGTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTC---------TGCCGGACCC..........25124.002400000024
.................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCCACCTCCTC---------TGCCGGACCCGTG.......27121.002100000021
.............................................................................................................................................................................................................................................................................................................................................................................................................CACTCCAGCCACCTCCTC---------TGCCGGA.............25116.001600000016
...............................................................................................................................................AGTTTCAA----GGGTTT-TTGGA.....................................................................................................................................................................................................................................................................................1912.0020000020
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCACCTCCTC---------TGCCGGACC...........2212.0022000000
....................ATCTC-----------T-----ATCTCTGA----TTCTGAA------ATT-GCA..................................................................................................................................................................................................................................................................................................................................................................................2712.0020100010
..............................................CTGA----TTCTGAA------ATT-GCAAAT...............................................................................................................................................................................................................................................................................................................................................................................2012.0022000000
.....CTTGAGTTAGGTTCCATCTC-----------T-----ATCTCT............................................................................................................................................................................................................................................................................................................................................................................................................2712.0020200000
............................................................................................................................................ACAAGTTTCAA----GGGTTT-TTG.......................................................................................................................................................................................................................................................................................2011.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCTC---------TGCCGGACCCGT........2111.0010000010
.............................................................................................................................................CAAGTTTCAA----GGGTTT-TTGGA.....................................................................................................................................................................................................................................................................................2111.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAACACTCCAGCCACCTCCTC---------T...................2611.0010000001
..........................................ATCTCTGA----TTCTGAA------ATT-GCAAATG..............................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
........................C-----------T-----ATCTCTGA----TTCTGAA------AT.......................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
..........GTTAGGTTCCATCTC-----------T-----ATCTCTGA----......................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
................................................................................................TTTC-------------------------TT-----TAAT-AAAACAAGTTTCAA----GGGT.............................................................................................................................................................................................................................................................................................2811.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCTCCTC---------TGCCGGACCC..........2111.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................ACACTCCAGCCACCTCCTC---------TGCCGG..............2511.0011000000
............................................CTCTGA----TTCTGAA------ATT-GCAAAT...............................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTC---------TGCCGGACCCGT........1811.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACCTCCTC---------TGCCGGACCC..........2211.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................CACTCCAGCCACCTCCTC---------TGC.................2111.0010100000
............................................................................................................................................................................................................................................................................................................................................................................................................ACACTCCAGCCACCTCCTC---------TGCCGGA.............2611.0011000000
.................TCCATCTC-----------T-----ATCTCTGA----TTCTGAA------A........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCCACCTCCTC---------TGCCG...............2111.0011000000
...............................................................................................................................................................................................................................................................................................................C-----CGAGCAATATAATTGATTTT--TG--TG...........................................................................................................2511.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................ACACTCCAGCCACCTCCTC---------T...................2011.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CACCTCCTC---------TGCCGGACCCGTGCTCCGT.2811.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................TATGGCCAACACTCCAGCCACC..................................2211.0011000000
.............AGGTTCCATCTC-----------T-----ATCTCTGA----T.....................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCACCTCCTC---------TGCCGGAC............2111.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTC---------TGCCGGACC...........2411.0010100000
.................................................................................................................................................................................................................................................................................................................................................................................................CATTATGGCCAACACTCCAGCCACCTC................................2711.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACTCCAGCCACCTCCTC---------TGCC................2511.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................ATTATGGCCAACACTCCAGCCACCTCCTC---------....................2911.0010100000
....ACTTGAGTTAGGTTCCATCTC-----------T-----..................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
................................................................................................................................................GTTTCAA----GGGTTT-TTGGAC....................................................................................................................................................................................................................................................................................1911.0010000100
......................................................TTCTGAA------ATT-GCAAATGTGAGTA........................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCTCCTC---------TGCCGGACCCGT........2311.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................C---------TGCCGGACCCGTGCTCCGT.2011.0010001000
........................................................................................................................................................................................................................................................................................................................................................................................................GCCAACACTCCAGCCACCTCCTC---------TGCCGG..............2911.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................TTATGGCCAACACTCCAGCCACCTCC...............................2611.0011000000
....ACTTGAGTTAGGTTCCATCTC-----------T-----ATCC..............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
.....................................................................T-GCAAATGTGAGTACATAACAAGG..............................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACTCCAGCCACCTCCTC---------TGCCGG..............2611.0011000000
...........TTAGGTTCCATCTC-----------T-----ATCTCTGA----TTCT..................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
.......................TC-----------T-----ATCTCTGA----TTCTGAA------ATT-GCA..................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
droYak3
TAGAAGGTGAATTTGGTTCCATCTC-----------T-----ATCTCAGA----TTCTGAA------ATT-GCAAATGTGAGTACATAACAAGGTTTTC--------------------------TT-----TAAT-AAAACCAAATTCAA----GGGTTT--TGGACAGC-CAAAAAAGTAAA-TCAA-GATCATGCTGATTGACCATATT--A-TCTTAAAAAGTAGCTGGGAAGAATT-------CTGTAGTTGCTA--TGCGTTTTATTTCAACTGCCTTTGAGCACCTTACGTAACTAC-----CGAGCAATAGAATTGATTTAGAAG--TGATTTT-CAT--TCTT---------T---TCA----------------GCGACATGGCCAACACTCCAGCCACCTCCTC---------TGCCGGACCCGTGCTCCGTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................ACATGGCCAACACTCCAGCCACC..................................2312.00200200000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACTCCAGCCACCTCCTC---------TGCC................2512.00202000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GACATGGCCAACACTCCAGC......................................2012.00202000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACTCCAGCCACCTCCT..............................2012.00200010010000
...............................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCCACCTCCTC---------TGCCGGACCCGTGCT.....3112.00200000000002
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCCTC---------TGCCGGACCCGTGCTCCGTG2512.00202000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAACACTCCAGCCACCTCCTC---------....................2512.00201100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GGCCAACACTCCAGCCACCTCCT..............................2311.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCCACCTCCTC---------TGCCGGACCCGT........2411.00101000000000
.....................................................................................................................................................AA----GGGTTT--TGGACAGC-CAAA............................................................................................................................................................................................................................................................................2011.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTC---------TGCCGGACCCG.........2611.00101000000000
................................................GA----TTCTGAA------ATT-GCAAATC..............................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAACACTCCAGCCACCTCCTC---------T...................2611.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CCAACACTCCAGCCACCTCCT..............................2111.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTC---------TGCCGGACCC..........2511.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCCACCTCCTC---------TGCC................2011.00100000010000
...AAGGTGAATTTGGTTCCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCCACCTCCTC---------TGCCGGACC...........2511.00110000000000
..............................................................................................TTTTC--------------------------TT-----TAAT-AAAACCAAATTCAA----GG...............................................................................................................................................................................................................................................................................................2711.00101000000000
......GTGAATTTGGTTCCATCTC-----------T-----..................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCCACCTCCTC---------TGCCGGACC...........2411.00101000000000
...............................................AGA----TTCTGAA------ATT-GCAAAT...............................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................A----------------GCGACATGGCCAACACTCC.........................................2011.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCCACCTCCTC---------TGCCG...............2111.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAGCCACCTCCTC---------TGCCGGACCC..........2711.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCTCCTC---------TGCCGGACCCGTGC......2511.00101000000000
.AGAAGGTGAATTTGGTTCCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...................................................................................................................................................................................GTAAA-TCAA-GATCATGCTGAT..................................................................................................................................................................................................................................................2111.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................CGACATGGCCAACACTCCAGC......................................2111.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAACACTCCAGCCACCTCCTC---------TGC.................2811.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACTCCAGCCACCTCCTC---------TGCCGG..............2611.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACTCCAGCCACCTCCTC---------TGCCGGACC...........2911.00100100000000
.......TGAATTTGGTTCCATCTC-----------T-----ATCTCAGA----TT....................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GGCCAACACTCCAGCCACCTC................................2111.00101000000000
............................................CTCAGA----TTCTGAA------ATT-GCAAAT...............................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCTCCTC---------TGCCGGACCCGTGCTCCG..2911.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CACTCCAGCCACCTCCTC---------TGCCGGA.............2511.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CGACATGGCCAACACTCCAGCCACC..................................2511.00101000000000
......GTGAATTTGGTTCCATCTC-----------T-----ATCT..............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GGCCAACACTCCAGCCACCTCC...............................2211.00101000000000
droEug1
T-----TCGATTTTTGTTCCATCTC-----------T-----ATCTGTGAATAATTCTGC-------TCT-GCAAATGTGAGTACATAACATGGTTTTTA-------------------------GT----TTT-T-AATATTGCTTACAAA---GGGTTT-TCTG-ATTA-AAACAAAGTAAT-TAAA-TATTAAACTTGATGCCCTTCAG--A-ACTTATTTAGTTGCTGACAGGCGC--------AGATAGTTTTTA--AGTGTTTTCTGGCAACTGCCTTTGAGGGCCTTACGTAACTAC-----CGAGCGATATAATTGATTTT--TTTTTAATTTT---G--TCCT---------T---ATA----------------GCGACATGGCCAACACTCCAGCAACCTCCTC---------CGCCGGACCCGTGCTGCGTGSizeHit CountTotal NormTotal
No Reads
droBia1
AGGGAATAGATTTTTGTTCCATCTC-----------T-----ATATCTG-----TTCTGAA------ATTTGC-AATGTGAGTACATAACAAGGTTTTTT-------------------------CT----TTT-T-AACACAATTTCCAAA---GGGTTT-TCCG-ACCTAAAGAAAGGCAAT-TAAT-CCTTGTAATAAGTGACATTAAC--T-ATTACACTAGTTGCTAGCAGGAGTT-------TA-TCCTTTTTA--AGTGTTTTCTGGCAACTGCCTCTGCAGACCTTACGTAACTGC-----CCAGCAATATTTGTGATTTT--TG--TGATTCACTTT--TCCT---------T---ACA----------------GCGACATGGCCAACACTCCCGCCACCTCCAG---------CGCCGGACCCGTGCTCCGTGSizeHit CountTotal NormTotal
No Reads
droTak1
AGG-------TTTTTCACCCATCAC-----------T-----ATCTCTGA----TTCTGAA------ATTTGC-AATGTGAGTACATAACAAGAATTTTC-------------------------TT-----TTTT-AGAACCATTTACAAG---GGGATT-TTTG-A-TA-GAAAAAAGTAAT-TAAG-CAATGTTATTAGTAGGCTTATC--T-ACTTAGTTAGTTTCTATCGAGAACT-------TAAACCCTTTCA--AGTGATTTCTGGCCACTACCTTTATAGACCTTACGTAACTGC-----CCAGCAATATAATATAATA---AT--TGATTTTTC-TTCACTT---------T---ACA----------------GCGACATGGCCAACACTCCAGCAACCTCCAA---------CGTGGGACCCGTGCTCCGTGSizeHit CountTotal NormTotal
No Reads
droEle1
C-------------------ACCTC-----------T-----ATCTCTGA------CAAAT------TCT-GCAAATGTGAGTACATAACAAGGTTTTTC-------------------------GT-----TT-T-AAAACCATTTCTAAA---GGGTTTTTTGGAATTA-TTGTAGAGTAAT-TTGT-TGATTTTCTTCGATCCCCTAAA--T-AGTTAAACAGTTGGCAGAAGCGACG-------CAACAGTTTTTA--TACGTTTTCTGCCAACTGCCTTTAAACCCCTTACGTAACTAC-----AGAACAATATAATCGATTTG--AG--TGGTTTT------TCCT-----------TAGCA----------------GCAAGATGACCAACGCTCCAGCAACCTCC------AGTGTGGCAGGACCCGTGCTCCGTGSizeHit CountTotal NormTotal
No Reads
droRho1
TAAACATCGTTATTTGTTCCAGCTC-----------TTCTACATCTCTGA------CAAAT------TCT-ACAAATGTGAGTACATAACAAGGTTTTTC-------------------------TT-----TT-T-AAAACGGATTCTAAA---GGGTTT-ATTT-ATTAAGTAAAGAGTGAT-TTAT-CATTTTTATTGGTGCCTTTTGA--T-AGGTGAATAGTTCGTAGAAGCAACC-------AATCAGTTTTTA--ATAGTTTTCTGCCAACTGCCTTTGCAGACCTTACGTAACTACACTACAGAGAACTATAATTGACTTT--TG--TGTTTTTTTAT--TCCT-----------CGGCA----------------GCAACATGGCCAACACTCCAGCAACATCC------AGTGTCGCAGGACCCGTGCTCCGTGSizeHit CountTotal NormTotal
No Reads
droFic1
CAGACATCAGTCATAGTTGCATCTC-----------T-----ATCTCTGA------CAAAT------TCT-GCAAATGTGAGTACATAATAAGGTTTTAA-------------------------AA-----TT-TAAAAAGAAATATCTAT-C-TGAATT-C-TT-ATTA-TTTCATCGTAAT-TTGG-CATTGTAAAGAAAGCGCTTGGC--A-A-TTAGTTAGGTGCCAGAAACAAAC-------TAATCGTTTTCA--TTTGTTTTGGGCAACTTGCCTA--CGAACCTTACGTAACTAC-----CGTGCAAAATAATTGAGTTC--TG--CGATTTT-C-T--TCCT---------T---TTA----------------GCGTCATGGCCAACACTCCAGCAACCTCCAG---------CGCAGGACCCGTGCTCCGTGSizeHit CountTotal NormTotal
No Reads
droKik1
CAAAAATTGCATCTGGCAACACTCA-----------T-----CTCTGAGG----CACTGAA-TATTTTCT-GCAAATGTGAGTACATAACT-----TTAC-------------------------CC-----TT-T-TAAACAATTTGCAGA---CTATT--TTGGAG--T-AACACAAGTACT-TATTACATTTTAAAAACAGCCCCTAGCGACAG-CTGATT-ATCGCGGGCGACTGTC-------CTACC--CTTTAACCCTGTTCTAAGCCAACCCCCTTCGAGCACCTTACGTAACTGG-----TTAAATTCTCATTTAATTCC--TT--CGATTTT-T-C--CCAC------------AGCA----------------GCGACATGGCCAATCCTCCAGCAACCTCC------AGCAGCGCCGGACCCGTGCTCCGCGSizeHit CountTotal NormTotal
No Reads
droAna3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTTAAGAACCTTACGTAACTGA-----TGACCAATACAGTACAATTT--CC--TTATTTT--------TT---------TGCAGAA----------------ACGACATGGCCAACACACCAGCAACCTCC------AGCAGCGCCGGCCCTGTGCTCCGTGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGCCCTGTGCTCCGT.19118.00181530000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGCCGGCCCTGTGCTCCGT.2415.005401000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCGGCCCTGTGCTCCGT.2014.004300001
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCC------AGCAGCGCCGGCCC...........2014.004400000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACACCAGCAACCTCC------AGCAGCGCC................2813.003210000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCGGCCCTGTGCTCCG..2013.003300000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGCCGGCCCTGTGC......1913.003110001
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACACCAGCAACCTCC------AGCAGC...................2413.003210000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGCCGGCCCTGTGCTCC...2112.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCCCTGTGCTCCGT.1812.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CC------AGCAGCGCCGGCCCTGTGCTCCGT.2612.002200000
............................................................................................................................................................................................................................................................................................................................................................................................................................C------AGCAGCGCCGGCCCTGTGCTC....2212.002100001
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCGGCCCTGTGCTCCGT.2112.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACCTCC------AGCAGCGCCGGCCC...........2112.002200000
..............................................................................................................................................................................................................................................................................................................................................................................AA----------------ACGACATGGCCAACACACC.........................................2112.002020000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACCTCC------AGCAGCGCC................2012.002110000
..................................................................................................................................................................................................................................................................................................................................................................................................GACATGGCCAACACACCAGC......................................2012.002020000
.............................................................................................................................................................................................................................................................................................................................................................................................................CACACCAGCAACCTCC------AGC......................1912.002020000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACACCAGCAACCTCC------AGC......................2112.002020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CTCC------AGCAGCGCCGGCCC...........1812.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCC------AGCAGCGCCGGCCCTGTGCTCC...2812.002200000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACACCAGCAACCTCC------AGCAG....................2412.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCAACACACCAGCAACCTCC------AGC......................2712.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGCCGGCCCTGTGCTCCGT.2312.002200000
................................................................................................................................................................................................................................................................................................................................................................................................ACGACATGGCCAACACACCAGCAACC..................................2612.002110000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCGGCCCTGTGCTCC...1912.002110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGCCGGCCCTGTGCTCCG..2311.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAACCTCC------AGCAGCGCCGGCCC...........2811.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACCTCC------AGCAGCGC.................1811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................GACATGGCCAACACACCAGCAACCTCC------A........................2811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................C------AGCAGCGCCGGCCCTGTGCTCCGT.2511.001100000
...............................................................................................................................................................................................................................................................................................................................................................................A----------------ACGACATGGCCAACACACCAGCAACC..................................2711.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACCTCC------AGCAGCGCCGGCCCTGTGCTC....2811.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACACCAGCAACCTCC------AGCAG....................2311.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACACCAGCAACCTCC------AGC......................2211.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACCTCC------AGCAGCGCCG...............2211.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................CCAACACACCAGCAACCTCC------A........................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACCTCC------AGCAGCGCCGGCCCTGTGCT.....2711.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACCTCC------AGCAGCGCCGGCCC...........2411.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................ACACCAGCAACCTCC------AGCAGCGCCG...............2511.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGCCGGCCCTGTGCTCCG..2211.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACCTCC------AGCAGCGCCGGCC............2011.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACACCAGCAACCTCC------AGCA.....................2211.001000001
..............................................................................................................................................................................................................................................................................................................................................................................AA----------------ACGACATGGCCAACACACCAGC......................................2411.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCTCC------AGCAGCGCCGGCCC...........2311.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................CACACCAGCAACCTCC------AGCAGCGCCGG..............2711.001000001
............................................................................................................................................................................................................................................................................................................................................................................AGAA----------------ACGACATGGCCAACACACCAGC......................................2611.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................CACACCAGCAACCTCC------AGCAGCGCCGGC.............2811.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAACCTCC------AGCAG....................1911.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................C------AGCAGCGCCGGCCCTGTGCTCC...2311.001010000
................................................................................................................................................................................................................................................................................................................................................................................................ACGACATGGCCAACACACCAGCAACCT.................................2711.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGCCGGCCCTGTGCT.....1911.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................ACACCAGCAACCTCC------AGCAGC...................2111.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGCCCTGTGCTCCGC.1911.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACACCAGCAACCTCC------AGCAGC...................2511.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACCTCC------AGCAGCGCC................1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGCCCTGTGCTCCGTG1911.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAACCTCC------AGCAGCG..................2111.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCC------AGCAGCGCCGGCCCTGTGCTCC...2511.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGCCGGCCCTGTGCTCC...2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CTCC------AGCAGCGCCGGCCCTGTGC......2311.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CC------AGCAGCGCCGGCCCTGTGCTCCGTG2711.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCGGCCCTGTGCTCCGTG2111.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCC------AGCAGCGCCGGCCCTGTGCTC....2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACACCAGCAACCTCC------AGCAGCGCCG...............2811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAACACACCAGCAACCTCC------.........................2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................CACACCAGCAACCTCC------AGCAGC...................2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCC------AGCAGCGCCGGCCCTGTGC......2511.001000001
................................................................................................................................................................................................................................................................................................................................................................................................ACGACATGGCCAACACACC.........................................1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CTCC------AGCAGCGCCGGCCCTGTGCTCC...2611.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCC------AGCAGCGCCGGCCCTGTGC......2211.001001000
...............................................................................................................................................................................................................................................................................................................................................................................A----------------ACGACATGGCCAACACACC.........................................2011.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................CATGGCCAACACACCAGCAACCTCC------.........................2511.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCC------AGCAGCGCCGGCCCTGTGCTC....2411.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGCCGGCCCTGTGCTCC...2211.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACACCAGCAACCTCC------AGCAGCGCC................2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CC------AGCAGCGCCGGCCCTGTGCTCC...2411.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACCTCC------AGCAGC...................1821.002000002
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACCTCC------AGCAGCGCCGGC.............1811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................ACGACATGGCCAACACACCAGCA.....................................2311.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCC------AGCAGCGCCGGCCCTGTG.......2311.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGCCGGCCCTGTGCT.....2011.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................GGCCAACACACCAGCAACCTCC------AGCA.....................2611.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CTCC------AGCAGCGCCGGCCCT..........1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCAACCTCC------AGCAGCGCCGGCC............2211.001000001
droBip1
TG-----TGATTGAAGTTCCATCCC-----------T-----GGCAATT---------GACTATTTTTCT-GCA-ATGTGAGTACATAACCGAAATTAC--------------------------CT-----TA----AAACCCTATCTATATTTGAGTTT-TTGGAC--C-AATAAATGTACATTGAC-CAGAATTTCTACTGCCTTTATC--T-AACAAACAAGTGTC-AACATTTTTTGACATTTCTTTCGTTGC---------TTTGTTACACCTTCCT-TAAGAACCTTACGTAACTGA-----TGACCAATACAATACAAATG--TT--TTATTTT--------TT---------TGCAGAA----------------ACGACATGGCTAACACTCCAGCAACCTCC------AGCAGCGCCGGCCCTGTGCTCCGTGSizeHit CountTotal NormTotal
No Reads
dp5
AAG---TTCATTACGGTTCCGTATATATTTTATCGAT-----ATCTCCAG-----TC-GAA-ATTTTTCT-GCAAATGTGAGT----------GTTTTTCTTTTTAGATTTCAATAACTATTTAAAAAGGGT-C-TAAAAAGAC--------------------------------------CT-TTAA-TTTGATTTAAATTC-TCATTTA--A-TAGCAAGCTATTGGTGGGCATAATG-------CTGCTAGTGCTA--C-AGCACTGCGCAAAATGGCACTGCGAAAATTACGTAACTGA-----CGTCCAATACAAATACTTTT--TC---------------TCCTTACAGCC-----AGTC----------------GAAAGATGACCAACGCTCCAGCAACCTCCGCCGCCAGCGCCGCCGGCCCAGTCCTGCGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCAACCTCCGCCGCCAGCGCCG..................2614.0040400000000
.................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGACCAACGCTCCAGCAACC..................................2513.0030210000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCGCCGCCGGCCCAGTCCTGCGT.2812.0020100001000
..............................................................................................................................................................................................................................................................................................................................................................................................................GCTCCAGCAACCTCCGCCG...........................1912.0020200000000
...............................................................................................................................................................................................................................................................................................................................................................................C----------------GAAAGATGACCAACGCTCCAGC......................................2312.0020110000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATGACCAACGCTCCAGCAAC...................................2012.0020000011000
.......................................................................................................................................................................................................................................................................................................................................................................................................GACCAACGCTCCAGCAACCTCCGC.............................2412.0020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................ACCAACGCTCCAGCAACCTCCGCCGC..........................2612.0020200000000
..............................................................................................................................................................................................................................................................................................................................................................................TC----------------GAAAGATGACCAACGCTCCAGCAACC..................................2812.0020200000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGACCAACGCTCCAGCAACCTCCGC.............................2512.0020200000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGACCAACGCTCCAGCAACCTCCGCCG...........................2712.0020200000000
.........................TATTTTATCGAT-----ATCTCCAG-----TC-GAA-A.............................................................................................................................................................................................................................................................................................................................................................................................2612.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................GATGACCAACGCTCCAGCAAC...................................2111.0010010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACCTCCGCCGCCAGCG.....................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................C----------------GAAAGATGACCAACGCTCCAGCAACC..................................2711.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCAACCTCCGCCGCCAGCGCCGC.................2711.0010000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCCAGCAACCTCCGC.............................2011.0010000010000
..................................................................................................................................................................................................................................................................................................................................................................................................AAGATGACCAACGCTCCAGC......................................2011.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................C-----AGTC----------------GAAAGATGACCAACGCTCC.........................................2411.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................GATGACCAACGCTCCAGCAACCTCCGCC............................2811.0010001000000
.............................................................................................................................................................................................................................................................................................................................................................................GTC----------------GAAAGATGACCAACGCTCC.........................................2211.0010100000000
............ACGGTTCCGTATATATTTTATC..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACCTCCGCCGCCA........................1811.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACCTCCGCCGCCAGCGCCGC.................2511.0010100000000
.................................................G-----TC-GAA-ATTTTTCT-GCAAATCC.............................................................................................................................................................................................................................................................................................................................................................................2211.0010001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACGCTCCAGCAACCTCCGCCG...........................2211.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GACCAACGCTCCAGCAACCTCCGCCG...........................2611.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................GTC----------------GAAAGATGACCAACGCTCCAGCA.....................................2611.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................AGATGACCAACGCTCCAGCAACC..................................2311.0010001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCCGCCAGCGCCGCCGGCCCA..........2411.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGACCAACGCTCCAGCAACCTCC...............................2311.0010100000000
..........................ATTTTATCGAT-----ATCTCCAG-----TC-..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................CC-----AGTC----------------GAAAGATGACCAACGCTCC.........................................2511.0010100000000
......................ATATATTTTATCGAT-----ATCTCC............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000000
...................................................................................................................AACTATTTAAAAAGGGT-C-TAAAAAGA.............................................................................................................................................................................................................................................................................................................2611.0010000100000
..................................................................................................................................................................................................................................................................................................................................................................................................AAGATGACCAACGCTCCAGCAACCT.................................2511.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGCCGGCCCAGTCCTGCGT.2211.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................GATGACCAACGCTCCAGC......................................1811.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCAACCTCCGCCGCCAGCGC....................2411.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACCTCCGCCGCCAGCGC....................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................GATGACCAACGCTCCAGCAACC..................................2211.0010100000000
...........................TTTTATCGAT-----ATCTCCAG-----T....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGCCCAGTCCTGCGT.1911.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................GAAAGATGACCAACGCTCCAGCAACCTCC...............................2911.0010000001000
........................ATATTTTATCGAT-----ATCTCCAG-----TC-GAA-ATT...........................................................................................................................................................................................................................................................................................................................................................................................2911.0010000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGCCGCCAGCGCCGCCGGC.............2211.0010000010000
....................................................................................................................................................................................................................................................................................................................................................................................................GATGACCAACGCTCCAGCAACCTCC...............................2511.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................ACGCTCCAGCAACCTCCGC.............................1911.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCCGCCAGCGCCGCCGGCCC...........2311.0010010000000
........................ATATTTTATCGAT-----ATCTCCAG-----TC-GA................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATGACCAACGCTCCAGCAACC..................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACCTCCGCCGCCAGCGCCGCCG...............2311.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACGCTCCAGCAACCTCCGCC............................2211.0010001000000
................................................AG-----TC-GAA-ATTTTTCT-GCAAATCC.............................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGACCAACGCTCCAGCAACC..................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................GAAAGATGACCAACGCTCCAGCAACC..................................2611.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GACCAACGCTCCAGCAACCTCCGCCGC..........................2711.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCCGCCAGCGCCGCCGGCCCAGT........2611.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCAACCTCCGCCGCCAG.......................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCCGCCAGCGCCGCCGGCC............2211.0010001000000
............................TTTATCGAT-----ATCTCCAG-----TC-G.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCGCCGCCGGCCCAGTCCTT....2511.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCAGCGCCGCCGGCCCA..........2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................AAGATGACCAACGCTCCAGCA.....................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACCTCCGCCGCCAGCGCC...................1911.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGACCAACGCTCCAGCAACCTCCGCCGC..........................2811.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................AAGATGACCAACGCTCCAG.......................................1911.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................................C----------------GAAAGATGACCAACGCTCCA........................................2111.0010100000000
........................................................C-GAA-ATTTTTCT-GCAAATCC.............................................................................................................................................................................................................................................................................................................................................................................2020.5010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCGCCGCCAGCGCCG..................1820.5010100000000
...................................................................................................................................................................................................................................................................................................................................ACTTTT--TC---------------TCCTTACAGTT-----................................................................................1980.1310000100000
droPer2
AAG---TTCATTACGGTTCCGTATATATTTTATCGAT-----ATCTCCAG-----TC-GAA-ATTTTTCT-GCAAATGTGAGT----------GTTTTTCTTTTTAGATTTCAATAACTATTTAAAAAGAGT-C-TAAAAAGAC--------------------------------------CT-TTAA-TTTGATTTAAATTC-TCATTTA--A-TAGCAAGCTATTGGTGGGCATAATG-------CTGCTAGTGCTA--C-AGCACTGCGCTAAATGGCACTGCGAAAATTACGTAACTGA-----CGTCCAATACAAATACTTTT--TC---------------TCCTTACAGCC-----AGTC----------------GAAAGATGACCAACGCTCCAGCAACCTCCGCCGCCAGCGCCGCCGGCCCAGTCCTGCGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................CGAT-----ATCTCCAG-----TC-GAA-ATTTTTCT-GC...................................................................................................................................................................................................................................................................................................................................................................................2713.003300000
...............................................................................................................................................................................................................................................................................................................................................................................C----------------GAAAGATGACCAACGCTCCAG.......................................2212.002000002
.............................................................................................................................................................................................................................................................................................................................................................................GTC----------------GAAAGATGACCAACGCTCCAGCA.....................................2612.002020000
.........................................................................................................................................................................................................................AGCAAGCTATTGGTGGGC.................................................................................................................................................................................................................1812.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................AAGATGACCAACGCTCCAGC......................................2012.002200000
....................................................................................................................................................................................................................................................................................................................................................................................................GATGACCAACGCTCCAGCAACCTC................................2412.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACCTCCGCCGCCAGCGC....................2212.002020000
........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCGCCGCCAGCGCCGCCGGCC............2411.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................TGACCAACGCTCCAGCAACCTCCGCCGC..........................2811.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................TGACCAACGCTCCAGCAACCTCCGCCGCC.........................2911.001010000
...................................AT-----ATCTCCAG-----TC-GAA-ATT...........................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
............................................................................................................................................................................................................................................................................................................................................................................AGTC----------------GAAAGATGACCAACGCTCCAGC......................................2611.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACCTCCGCCGCCAGCGC....................2311.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACCTCCGCCGCCAGCG.....................2111.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................GACCAACGCTCCAGCAACCTCC...............................2211.001010000
............................................................................................................................................................................................................................................................................................................................................................................AGTC----------------GAAAGATGACCAACGCTCC.........................................2311.001010000
.....................................................................................................................................................................................................................................................................................................................................................................CC-----AGTC----------------GAAAGATGACCAACGCTC..........................................2411.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCGCCGGCCCAGTCCTGCGT.2411.001001000
........................................................................................................................TTTAAAAAGAGT-C-TAAAAAGA.............................................................................................................................................................................................................................................................................................................2111.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCAACCTCCGCCGCCAG.......................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................GATGACCAACGCTCCAGCAACC..................................2211.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................GACCAACGCTCCAGCAACCTCCGCCG...........................2611.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCAACCTCCGCCGCCAGCGT....................2411.001010000
droWil2
ACGTAAT----TTAATTTCCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTGTCT--TCCT---------T---GCA----------------GA-CCATGGCCAACACTCCAGCAACAACA------AGCAGCGCAGGACCCGTCCTCCGTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA------AGCAGCGCAGGACCCGTCC......2618.00808000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA------AGCAGCGCAGGACCCGTCC......2714.00404000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACA------AGCAGCGCAGGACCCGTCCTC....2513.00301110
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGCAGGACCCGTCCTC....2113.00320001
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA------AGCAGCGCAG...............1813.00300030
..........................................................................................................................................................................................................................................................................................................................................................................................................................ACA------AGCAGCGCAGGACCCGTCCTC....2413.00321000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA------AGCAGCGCAGGACCCG.........2413.00302010
......................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA------AGCAGCGCAGGA.............1912.00202000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACA------AGCAGCGCAGGACCCGTCCTCCG..2712.00202000
.................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACAACA------AGCAGCGCAGGACC...........2612.00220000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCAACAACA------AGCAGCGCAGGACCC..........2812.00202000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACTCCAGCAACAACA------AGCAGCGC.................2712.00201010
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACA------AGCAGCGCAGGACCCGTCCTCC...2612.00200020
..........................................................................................................................................................................................................................................................................................................................................................................................................................ACA------AGCAGCGCAGGACCCGTCCTCC...2512.00200020
............................................................................................................................................................................................................................................................................................................................................................................................................................A------AGCAGCGCAGGACCCGTCCTCC...2312.00200020
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACA------AGCAGCGCA................1911.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACA------AGCAGCGCAGGACCC..........2611.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................GGCCAACACTCCAGCAACAACA------.........................2211.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGCAGGACCCGTCCTCC...2111.00100001
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACA------AGCAGCGCAGG..............2111.00100100
.................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACAACA------AGCAGCGCAGG..............2311.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACA------AGCAGCGCAGGACC...........1811.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA------AGCAGCGCAGGACCCGTCCTC....2811.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACA------AGCAGCGCAGGA.............2111.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA------AGCAGCGCAGGACCCGTC.......2611.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA------AGCAGCGCAGGACCCGTC.......2411.00101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA------AGCAGCGCAGGA.............2011.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACTCCAGCAACAACA------A........................2011.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCAGGACCCGTCCTCCGT.2111.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCAACAACA------AGCAGCGCAGGACC...........2711.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGCAGGACCCGTCCTCC...2011.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACA------AGCAGCGCAG...............1911.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AACA------AGCAGCGCAGGACCC..........1911.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................CACTCCAGCAACAACA------AGCAG....................2111.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................ACA------AGCAGCGCAGGACCCGTCC......2211.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA------AGCAGCGCAGGACCCG.........2311.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................CACTCCAGCAACAACA------AGCA.....................2011.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCAGGACCCGTCCTCC...1911.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................A------AGCAGCGCAGGACCCGTCCTC....2211.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA------AGCAGCGCAGGACCCGTC.......2511.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACTCCAGCAACAACA------AGCAGCGCAG...............2911.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACA------AGCAGCGCAGGACC...........2311.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA------AGCAGCGCAGGACC...........2011.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACTCCAGCAACAACA------AGCAGCGC.................2611.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACA------AGCAGCGCAGGACC...........2411.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACTCCAGCAACAACA------AGC......................2111.00101000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA------AGCAGCGCAGGACCCGT........2411.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACAACA------AGCAGCGC.................2011.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACTCCAGCAACAACA------.........................1920.50101000
droVir3
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATAACAAC-----TGACCAGTGAAAAT---T--------TGATTTA-C-----------AGTC----CAACA----------------ATAATATGGCCAACACTCCAGCAACCTCC------AGCAGCGCCGGCCCCGTGCTGCGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAGCAACCTCC------AGCAGCGCC................24111.0011001100000000002301000110000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................CACTCCAGCAACCTCC------AGCAGCGCC................2514.004000100000000000000200010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCAACCTCC------AGCAGCGCC................2313.003000000000000000000100100000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAGCAACCTCC------AGCAGC...................2112.002000000000000001000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................C----CAACA----------------ATAATATGGCCA................................................1812.002002000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCAACACTCCAGCAACCT.................................2212.002100000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACCTCC------AGCAGCGCC................2112.002001000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................AACCTCC------AGCAGCGCCGGCCC...........2112.002000000000000000001000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................TC----CAACA----------------ATAATATGGCCAACACTCCA........................................2712.002000000000000000000000000000010000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................ATATGGCCAACACTCCAGCAACC..................................2312.002001000000000000010000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACCTCC------AGCAGCGCC................2012.002001000000000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCAACACTCCAGCAACCTCC------.........................2412.002001000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCAACACTCCAGCAACC..................................2112.002000000000000000001000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................................................TACATAACAAC-----TGACCAGT...............................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACCTCC------AGCAGCGCCGGCC............2011.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATATGGCCAACACTCCAGCAAC...................................2211.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TGGCCAACACTCCAGCAACC..................................2011.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................ATATGGCCAACACTCCAGC......................................1911.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCAACCTCC------AGCAGCGCCGG..............2411.001000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAGCAACCTCC------AGCAGCGC.................2311.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACCTCC------AGCAGCGCCGGCCCC..........2211.001000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CA----------------ATAATATGGCCAACACT...........................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACTCCAGCAACCTCC------AGCAGCGCC................2711.001000000000000000000100000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CACTCCAGCAACCTCC------AGCAGC...................2211.001000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TATGGCCAACACTCCAGCAT....................................2011.001000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACTCCAGCAACCTCC------AGC......................2111.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACCTCC------AGCAGCGCCGGCCC...........2411.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AATATGGCCAACACTCCAGCAACC..................................2411.001000000000000000000010000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACTCCAGCAACCTCC------AGCAGCGC.................2711.001000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AATATGGCCAACACTCCAGCAACCTCC------.........................2711.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CACTCCAGCAACCTCC------AGC......................1911.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................CAAC-----TGACCAGTGAAAAT---T--------TGAT.........................................................................................................2311.001000000000000000010000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAGCAACCTCC------AGCAG....................2011.001000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TAATATGGCCAACACTCCAGCAACC..................................2511.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCC------AGCAGCGCCGGCCCCGTGCT.....2311.001000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGCCGGCCCCGTGC......1811.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AATATGGCCAACACTCCAGCA.....................................2111.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGCCGGCCCCGTGC......1911.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCAACCTCC------AGCAGCGCCG...............2411.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AAAAT---T--------TGATTTA-C-----------AGTC----CA...............................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................A----------------ATAATATGGCCAACACTCC.........................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................C------AGCAGCGCCGGCCCCGTGC......2011.001000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TAATATGGCCAACACTCCAGC......................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCC------AGCAGCGCCGGCCCC..........1811.001000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................AATATGGCCAACACTCCAGC......................................2011.001000100000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCC------AGCAGCGCCGGCCCCG.........1911.001000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACTCCAGCAACCTCC------AGCAGCGCC................2811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AACAAC-----TGACCAGTGAAAAT---......................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACTCCAGCAACCTCC------AGCAGCGCCG...............2811.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACCTCC------AGCAGCGCCGGCCCCGTGCTGC...2911.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACTCCAGCAACCTCC------A........................1911.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................AAAAT---T--------TGATTTA-C-----------AGTC----CAAA.............................................................................2211.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AACCTCC------AGCAGCGCCGG..............1811.001000000000100000000000000000000000000000000000000000000000000000
droMoj3
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATAACAAC-----TGACCAATGAAAAT---T--------T------------TACTTACAGTTACCGTAACA----------------TTAACATGGCCAACACTCCAGCTACCTCC------AGCAGCGCCGGACCCGTCCTGCGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGACCCGTCCTGCGTG2013.003300000
.....................................................................................................................................................................................................................................................................................................................................................................TTACCGTAACA----------------TTAACATGGCCAACAC............................................2712.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCAACACTCCAGCTACCTCC------AGC......................2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................AACACTCCAGCTACCTCC------AGCAGC...................2411.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................ACTCCAGCTACCTCC------AGCAGCGCC................2411.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGCCGGACCCGTCCTGCGTG2511.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................ACATGGCCAACACTCCAGCTACCTCC------A........................2711.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGCCGGACCCGTCCTGC...2211.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................C------AGCAGCGCCGGACCCGTCCTGC...2311.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................CCTCC------AGCAGCGCCGGACCCGTC.......2311.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................TAACATGGCCAACACTCCAGCTACC..................................2511.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTCC------AGCAGCGCCGGAC............2111.001100000
.....................................................................................................................................................................................................................................................................................................................TGACCAATGAAAAT---T--------T------------TACT............................................................................................2011.001100000
..........................................................................................................................................................................................................................................................................................................................................................................GTAACA----------------TTAACATGGCCAACACTCCAGC......................................2811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................TTACCGTAACA----------------TTAACATGGCCAACACT...........................................2811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTACCTCC------AGCAGCGCCG...............2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................A----------------TTAACATGGCCAACACT...........................................1811.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCTACCTCC------AGCAGCGCCGGA.............2511.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCTACCTCC------AGCAGCGCCGGA.............2611.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................TACCTCC------AGCAGCGCCGGACC...........2111.001000001
................................................................................................................................................................................................................................................................................................................................................................................................TTAACATGGCCAACACTCCAGCT.....................................2311.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................C------AGCAGCGCCGGACCCGTCCTGCGT.2511.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAACACTCCAGCTACCTCC------AGCAG....................2411.001100000
droGri2
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACATAACAGC-----TGACCAGCGAAAAT---T--------TTT-----G--TGTATTTACAGTC-----AGTCAATCAATCGTAATATTGAAATATGGCCAACACTCCAGCAACATCC------AGCGCCGCCGGTCCCGTTCTCCGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................ATGGCCAACACTCCAGCA.....................................1811.00110
........................................................................................................................................................................................................................................................................................................................................................................................................................CATCC------AGCGCCGCCGGTCCCGTTCTCCGT.2911.00110
...........................................................................................................................................................................................................................................................................................................................................................................................................................CC------AGCGCCGCCGGTCCCG.........1811.00110
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCCGCCGGTCCCGTTCTCC...2211.00110
................................................................................................................................................................................................................................................................................................................................................................................................GAAATATGGCCAACACTCCAGCA.....................................2311.00110

Generated: 05/19/2015 at 11:11 AM