ID:

dsi_23002

Coordinate:

3l:15821144-15821293 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3l_15820958_15822268_-]; CDS [3l_15820958_15822010_-]

Repeatable elements

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

########################################################################################################################################################################################################################################################## AAATTAATCAACGTGCTACATTGTTGCAGCAATCTGCAACAGCAGCAACAACATCAACTACATTGCCACATGTGCCCGGGGCAGCGGCAGCAACAGCAGCAACAACAGCAAACGTATCTCTGCGTGCCGTGCCTCGTATTTTTAAACGCAAACGTGATACGGTCCAAACAGCGACCACTGCATCACCTTTGACCCCGCAGCAACATCCAACAGTCGCAGCAGCAACATCAGCCACATCCACAACAACCAC ************************************************........(((((......)))))..(((((((.((((((((..((..((.............))..)).))).))))))))))))............((((.(((((..((((........)))).....))))).)))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
...............................................................................................................................................................................................................CAACAGTCGCAGCAGCAAC........................	19	0	3	0.33	1	1	0	0
.........................................................................TCCCGGGGTAGCGGCAG................................................................................................................................................................	17	2	10	0.10	1	0	0	1
...........CGTGCTACAATGGTGCA..............................................................................................................................................................................................................................	17	2	14	0.07	1	0	1	0
.........CACGTGCTACAATGGTGCA..............................................................................................................................................................................................................................	19	3	20	0.05	1	0	1	0

Anti-sense strand reads

TTTAATTAGTTGCACGATGTAACAACGTCGTTAGACGTTGTCGTCGTTGTTGTAGTTGATGTAACGGTGTACACGGGCCCCGTCGCCGTCGTTGTCGTCGTTGTTGTCGTTTGCATAGAGACGCACGGCACGGAGCATAAAAATTTGCGTTTGCACTATGCCAGGTTTGTCGCTGGTGACGTAGTGGAAACTGGGGCGTCGTTGTAGGTTGTCAGCGTCGTCGTTGTAGTCGGTGTAGGTGTTGTTGGTG ************************************************........(((((......)))))..(((((((.((((((((..((..((.............))..)).))).))))))))))))............((((.(((((..((((........)))).....))))).)))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
...................................................................................................................................................................................................................................AGTCGGTGTACCTGTTGTTCGT.	22	3	1	1.00	1	1	0	0	0
...............................................................................................................................................................................................................................TTGTAGTCGGTGTAGGCTTTGGT....	23	3	2	0.50	1	1	0	0	0
........................................................................................................................................ATAAAAATTTGCGTTT..................................................................................................	16	0	2	0.50	1	0	1	0	0
...........................................................................................................................................................................................................GTAGGTTGTCTGGTTCGTCGT..........................	21	3	8	0.25	2	2	0	0	0
.............................................GTTGTTGTAGATGATGTAAGTG.......................................................................................................................................................................................	22	3	6	0.17	1	1	0	0	0
...........................................AAGTTGTTGTAGATGATGTAA..........................................................................................................................................................................................	21	3	12	0.17	2	2	0	0	0
.........................................................................................CGTTGTCGTCGTTGTTGTCGT............................................................................................................................................	21	0	20	0.15	3	0	3	0	0
.......................................................................................................................................................................................................................CGGAGTGGTTGTAGTCGGTGT..............	21	3	20	0.10	2	2	0	0	0
............................................................................................................................................................................................................TAGGTTGTCAGGTTCGT.............................	17	2	20	0.10	2	0	2	0	0
...........................................................................................TTGTCGTCGTTGTTGTCGT............................................................................................................................................	19	0	20	0.10	2	2	0	0	0
..........................................................................................GTTGTCGTCGTTGTTGT...............................................................................................................................................	17	0	20	0.10	2	0	2	0	0
..................................ACGTTGTCCTCGTTGTTGT.....................................................................................................................................................................................................	19	1	13	0.08	1	0	0	0	1
..................................................................................................................................................................................ACGTGGTGGACACTTGGGC.....................................................	19	3	14	0.07	1	0	1	0	0
........................................................................................TCGTTGTCGTCGTTGTTTTCGT............................................................................................................................................	22	1	20	0.05	1	0	1	0	0
.........................................................................................CGTTGTCGTCGTTGTTGTCAT............................................................................................................................................	21	1	20	0.05	1	0	1	0	0
........................................................................................TCGTTGTCGTCGTTGTTGTCGT............................................................................................................................................	22	0	20	0.05	1	0	1	0	0
..........................................................................................................................................AAAAATTTTCGGTTGCAC..............................................................................................	18	2	20	0.05	1	0	0	1	0
................................................................................................................................................................................................................TTGTCAGCGTCGCCGG..........................	16	2	20	0.05	1	1	0	0	0
...........................................................................................TTGTCGTCGTTGTTGTCG.............................................................................................................................................	18	0	20	0.05	1	0	1	0	0
................................................................................................................................................................................................................TTGTCAGCGTCGCCG...........................	15	1	20	0.05	1	0	0	1	0
........................................TCGACGTTGTTGTAGTT.................................................................................................................................................................................................	17	1	20	0.05	1	0	1	0	0

Generated: 04/23/2015 at 09:27 PM