ID:

dsi_22991

 Coordinate:

3r:4408202-4408494 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.8 -11.5 -11.5 -11.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGGAGGCATTCCAGAACAAGTACGGCAAGAGCTTGGAGTCCTGGATCAAGGTAAATACCGATTTCAATTACATTCATATTTGCGTGTGCTTGCTAGAACTTTCAACTCTGCACCCTGTTCAATGTGCCACTAACTCGCATTCGATTGTACCTGCAACAAATCCCATTAATCGTGGTTCCATCAAAGTTTAATAATCGTTCATCCAATCTGGCTTCTCCTGTTGTTGTTACTGCTCCTTTGCCCAACACTTTCTTGCCGATTTCTGAAGCCATTATCCCTTCCCGGCCGACTGCTTCATTTGTGTGCATAAAACATTAAAACTTGGCATATTCTATATTTTTAGGGCGATACATCCGGCGATTATAAGCGTGCCCTATTGGCTATTGTTGGCTT
**********************************************************************************************...............................((..............(((((((..............((((.....))))...............))))))).............))************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 SRR902008
ovaries
 SRR902009
testis
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.........TCCAGAACAAGTACGGCAAGAGCTT....................................................................................................................................................................................................................................................................................................................................................................... 25 0 1 4.00 4 0 3 0 1 0 0 0 0 0 0 0 0 0
.........TCCAGAACAAGTACGGCAAGAGCT........................................................................................................................................................................................................................................................................................................................................................................ 24 0 1 3.00 3 0 0 0 2 0 0 1 0 0 0 0 0 0
..............................................................................................AGAACTTTCAACTCTGCACCC...................................................................................................................................................................................................................................................................................... 21 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0
.....................ACGGCAAGAGCTTGGAGTCCT............................................................................................................................................................................................................................................................................................................................................................... 21 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0 0
...................GTACGGCAAGAGCTTGGAGTCC................................................................................................................................................................................................................................................................................................................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..................AGTACGGCAAGAGCTTGGAGTCC................................................................................................................................................................................................................................................................................................................................................................ 23 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
..........CCAGAACAAGTACGGCAAGAGCTT....................................................................................................................................................................................................................................................................................................................................................................... 24 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0
.............GAACAAGTACGGCAAGAGCT........................................................................................................................................................................................................................................................................................................................................................................ 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...................GTACGGCAAGAGCTTGGAGTCCT............................................................................................................................................................................................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................CAAGTACGGCAAGAGCTTGGAGTCCTG.............................................................................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............ACAAGTACGGCAAGAGCTTGGAGTC................................................................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................GCAAGAGCTTGGAGTCCTGGA............................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...............ACAAGTACGGCAAGAGCT........................................................................................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................AGTACGGCAAGAGCTTGGA.................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................TAATCGTTCATCCAATCTGGC..................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................TACGGCAAGAGCTTGGAGTCC................................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................AGTACGGCAAGAGCTTGGAGTCCT............................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................GTACGGCAAGAGCTTGGAGTCCTGG............................................................................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........CCAGAACAAGTACGGCAAGAGCTTG...................................................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.............GAACAAGTACGGCAAGAGC......................................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............AGAACAAGTACGGCAAGAGCTT....................................................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................CTTTCAACTCTGCACCCT..................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................ACTTTCAACTCTGCACCCTGC................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........TTCCAGAACAAGTACGGCAAGAGCT........................................................................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................GTACGGCAAGAGCTTGGAGT.................................................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................ACGGCAAGAGCTTGGAGTCC................................................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................CGATGCATCCCGGGATTATAA........................... 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....GCATTCCAGAACAAGTACG................................................................................................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............AGAACAAGTACGGCAAGAGCTTGGA.................................................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......ATTCCAGAACAAGTACGGCAAGAGCTT....................................................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GATACATCCGGCGATTATAAG.......................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................ATTCGATTGTACCTGCAACAA.......................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........CCAGAACAAGTACGGCAAGAGCTTGGA.................................................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................AGCTTGGAGTCCTGGATCAA........................................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................CTTCCCGGCCGACTGCTT.................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................TGCCCTATTGGCTATTGTTGGCTT 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................ACTTTCAACTCTGCACCCTGG................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................AAGTACGGCAAGAGC......................................................................................................................................................................................................................................................................................................................................................................... 15 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................ATGTGCTTGATAGAACTTT................................................................................................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................................................................................TTCTAGGGCGGTACATC....................................... 17 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................AATCACATTCATATTTACGTTT.................................................................................................................................................................................................................................................................................................................. 22 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................CCTATTGTCTCTTGTTGGT.. 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GATGCATCCCGGGATTATA............................ 19 3 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................GATGCGTCCGGCGATTAAA............................ 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................TGTTCGATTGTACCTG................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TCCTCCGTAAGGTCTTGTTCATGCCGTTCTCGAACCTCAGGACCTAGTTCCATTTATGGCTAAAGTTAATGTAAGTATAAACGCACACGAACGATCTTGAAAGTTGAGACGTGGGACAAGTTACACGGTGATTGAGCGTAAGCTAACATGGACGTTGTTTAGGGTAATTAGCACCAAGGTAGTTTCAAATTATTAGCAAGTAGGTTAGACCGAAGAGGACAACAACAATGACGAGGAAACGGGTTGTGAAAGAACGGCTAAAGACTTCGGTAATAGGGAAGGGCCGGCTGACGAAGTAAACACACGTATTTTGTAATTTTGAACCGTATAAGATATAAAAATCCCGCTATGTAGGCCGCTAATATTCGCACGGGATAACCGATAACAACCGAA
*************************************************************************************************************************************************************************************...............................((..............(((((((..............((((.....))))...............))))))).............))********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 O001
Testis
 O002
Head
 GSM343915
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
...TCCGTAAGGTCTTGTTCATGC................................................................................................................................................................................................................................................................................................................................................................................. 21 0 1 7.00 7 5 0 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................AAGGGCCGGCTGACGAAGTAA.............................................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..................................CCTCAGGACCTAGTTCCATT................................................................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................CACCAAGGTAGTTTCAAAT........................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................GGCCGGCTGACGAAGTAAACA........................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................CCTCAGGACCTAGTTCCATTT.................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................CTCGAACCTCAGGACCTAGTT........................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................AGGGCCGGCTGACGAAGTA............................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................GGGTAATTAGCACCAAGTTAG................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................CCGTTCTCGAACCTCAGGAC.............................................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AGAGGACAACAACAATGACGA............................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................ATGGACGTTGTTTAGGGTAATT................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TCGCGAATAGGGAAGGGC............................................................................................................. 18 2 4 0.50 2 0 0 0 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................CAAGTAGGTTAGACCGACAAT................................................................................................................................................................................ 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0
...........................................CTAGTTCCATATATGTCTACA......................................................................................................................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................ATGGTGATTGAGCGT.............................................................................................................................................................................................................................................................. 15 1 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0
.........................GTTCTCGCCCCTCTGGACCT............................................................................................................................................................................................................................................................................................................................................................ 20 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................CGAAAGTTATTGTAAGCATAA......................................................................................................................................................................................................................................................................................................................... 21 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................GAGGTCAACTACAATGA.................................................................................................................................................................. 17 2 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................GACGTTGTTTAGAGT.................................................................................................................................................................................................................................... 15 1 20 0.10 2 0 0 0 1 0 0 0 0 0 1 0
.................................................................................................................................................ACATGGTCGTTGTGTGGGGT.................................................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................ACCAAGGTAGTTGAAAAT........................................................................................................................................................................................................... 18 2 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................TCGTGGCTAAAGTTAATGTC................................................................................................................................................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................................................................................................................ATGTATTTTGTAAGTTTG........................................................................ 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Generated: 04/24/2015 at 06:03 AM