ID:

dsi_2299

 Coordinate:

3r:1083156-1083343 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.6 -13.59 -13.59

Flybase annnotation

exon [3r_1083344_1083663_+]; CDS [3r_1083344_1083499_+]; exon [3r_1082922_1083155_+]; CDS [3r_1082922_1083155_+]; intron [3r_1083156_1083343_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAGGCGAAGATGATGAAGATGACGATGTTGATGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACTCTTTTGAATAGATTTTAATTTCCACAACCCCCTTTGTTTCATTTTGCGTTTTAGATTTTGTTGACTTTCTAACCCACACCGCCACTTCATTAAGACACTAACTAACACAGCCAGATCTTGGATCACCTAGACTAATTCCAAATTTCTCCACCCCTTTCTAACCAGGACGAACCAACGCCGCCCCTGCCAGCCGTCAACAACCAGGAGCTCAGTGC
**************************************************.((((((((((((.............(((((.....))))).............)))))))......((.(((((((.(((((.(((......................))).)))))..))))..))).)))))))...(((((..............)))))........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
....................................................................................................................................................................................................................................................................CAGCCGTCAACAACCAGGAGC....... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
........GATGATGAAGATGACGATGTT................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................GATGACGAACCAACGCCGCCCC............................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0
.....GAAGATGATGAGGATGACGATG..................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................ATTTTGTTGACTTTCTAACCC............................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.....GAAGATGATGAGGATGACGATGTCG.................................................................................................................................................................................................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0 0
..............GAAGATGACGATGTTGATGCC............................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.............TGAAGATTACGATGTTGAAG............................................................................................................................................................................................................................................................... 20 2 2 0.50 1 0 0 1 0 0 0 0 0
................................................................................................................................CTGTGTTGGCTTTCTAACCC............................................................................................................................................ 20 3 7 0.14 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................AGGACGATCCAACGACGCA................................. 19 3 9 0.11 1 0 0 0 0 0 1 0 0
....................................................................................................................................GTTGGATTTCTAACCCGCA......................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 1 0
...........GTTGGAGATGACGACGTTGAT................................................................................................................................................................................................................................................................ 21 3 13 0.08 1 0 0 0 0 1 0 0 0
............TTGAAGATTACGACGTTGAT................................................................................................................................................................................................................................................................ 20 3 19 0.05 1 0 0 0 0 0 0 0 1
.............TGAAGACGACGACGTTGAT................................................................................................................................................................................................................................................................ 19 2 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

TTCCGCTTCTACTACTTCTACTGCTACAACTACGGCTACGCCGAGTTGATCAACCGTTATTTCTTCGTGGTGAGAAAACTTATCTAAAATTAAAGGTGTTGGGGGAAACAAAGTAAAACGCAAAATCTAAAACAACTGAAAGATTGGGTGTGGCGGTGAAGTAATTCTGTGATTGATTGTGTCGGTCTAGAACCTAGTGGATCTGATTAAGGTTTAAAGAGGTGGGGAAAGATTGGTCCTGCTTGGTTGCGGCGGGGACGGTCGGCAGTTGTTGGTCCTCGAGTCACG
**************************************************.((((((((((((.............(((((.....))))).............)))))))......((.(((((((.(((((.(((......................))).)))))..))))..))).)))))))...(((((..............)))))........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR902009
testis
 O001
Testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
........................................................................................................................................................................................................................AAGAGGTGGGGAAAGATTGG.................................................... 20 0 1 2.00 2 0 0 2 0 0 0 0 0
................................................................................................TGTTAGGGCAAACAAAGTAA............................................................................................................................................................................ 20 2 1 1.00 1 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................AGTGGATCTGATTAAGGTTTA........................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................TTGATTGTGTCGGTCTAGAAC............................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................TTTGTGTCGGTCTAGAACCTA............................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0
.....................................................................GTGAGAAAACTTATCTAAAA....................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................CAGTTGTTGGTCCTCGAGTCA.. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..CCGCTTCTACTACTTCTACT.......................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................CGGTGAAGTAATTCTGTG..................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................GGTCCTCGATTCACG 15 1 8 0.13 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................................TGATTGTGGCGGGCTA................................................................................................... 16 2 20 0.10 2 0 0 0 0 0 0 2 0
.....................................................................................................................................................................................................................................AGCTTGGTCCTGATTG........................................... 16 2 20 0.10 2 0 0 0 0 0 2 0 0
.................................................................................................................................................................................................................AGGTCGAAAGAAGTGGGGAAA.......................................................... 21 3 12 0.08 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................AGAGGTGTGGAAAGA........................................................ 15 1 13 0.08 1 0 0 0 0 0 0 1 0
.............................................................................................AGCTGTTGTGGGAAACA.................................................................................................................................................................................. 17 2 16 0.06 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................CGGCAGATGTTGTTCCTTG....... 19 3 18 0.06 1 0 1 0 0 0 0 0 0
..........................................................ATTGCTTCGTGGTGGGAC.................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................................TCATTGATTGTGACGGT...................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:1083106-1083393 + dsi_2299 AAGGCGAAGATGATGAAGAT---GACG---------------------ATGTTGATGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACTCTTTTGAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCCCCTTTGTTTCATTTT-GCGTTT-------TAGATTTTG-TT-------GACTTTCTAACCCACACCGCCACTT--C---ATTAAGACACTAA-----------------------CTAA------------------------------CACAGC----------------------------------CAG--ATCT-------TGGATC-----ACCTAGACTAATTC----CAAA---------------------TTT-CTCCACCCC-TT-TCT----------AACCAGGACGAACCAA-CGC--CGCCCCTGCCAGCCG------------TCAACAACCAGGAGCTCAGTGC
droSec2 scaffold_6:1301026-1301307 + AAGGCGAAGATGATGAAGAT---GACG---------------------ATGTTGATGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACTCTTTTGAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCCCCTTTGTTTCATTTT-GCGTTT-------TAGATTTTG-TT-------AACTTTATAACCCACAC------TT--C---ATTAAGACACTAA-----------------------CTAA------------------------------CGCAGC----------------------------------CAG--ATCT-------TGGATC-----ACCTAGACTAATTC----CAAA---------------------TTT-CTCCACCCC-TT-TCT----------AACCAGGACGAACCAA-CGC--CGCCCATGCCAGCCG------------TCAACAACCAGGAGCTCAGTGC
dm3 chr3R:1181909-1182196 + AAGGCGAAGATGATGAAGAT---GACG---------------------ATGTTGATGCCGAAGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACTCTTTTGAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCACCTTTGTTTCATTTT-GCGTTA-------TAGATTTTG-TT-------GACTTTCTAACCCACACCGTCACTT--C---ATTAAGACAGTAA-----------------------CTAA------------------------------CACGGC----------------------------------CAG--ATCT-------TGGATC-----ACCTCGACTAATTC----CACA---------------------TTT-TTCCACCCT-TT-TCT----------AACCAGGATGAACCAA-CGC--CGCCCCTGCCAGCCG------------TCAACAACCAGGAGCTCAGTGC
droEre2 scaffold_4770:1451211-1451497 + AAGGCGCAGATGATGATGAT---GAAG---------------------ATGTTGATGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACTCTTTTGAA------------T---AGA----TTT-TAATTTC--GACA------A--------CCCCCTTTGTTTCATTTT-ATGTTT-------TAGATTTTG-TT-------GACTTCTTAACCCACACCGCCAATT--C---ATTAAGACACTAA-----------------------CCGCATAGC-----------------------------------------------------------------CAG--ATCT-------TGGATC-----ACCTCGACTAATCC----CAAA---------------------TTT-CTCCACCCC-TT-TCT----------AACCAGGACGAACCGA-CCC--CGCCTTTGCCATCCG------------TTAACAACCAGGAGCTCAGTGC
droYak3 3R:1570530-1570816 + AAGGCGAAGATGATGAAGAT---AACG---------------------ATGTTGATGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACTCTTTTAAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCCCCTTTGTTTCATTTT-ATGTTT-------TAGATTTCA-TT-------AACTTCTTAACCAACACCGTCAATT--C---ATTAAGACACTAA-----------------------CCACATAGC-----------------------------------------------------------------CAG--ATCT-------TGGACC-----ACCTTGACTAATTC----CAAA---------------------TTT-CTCCACCCC-TT-TCT----------AACCAGGACGAACCAG-CCC--CGCCTTTGCCCTCCG------------TTAACAACCAGGAGCTCAGTGC
droEug1 scf7180000409766:100199-100504 + AAGGCGAAGATGATGAAGAA---AATG---------------------ACGTTGTCGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACATTTTTGAA------------T---AGA----TTTTTAATTTC--CACA------T-----------CCTTTGTTTCATTTT-TCGTTT-------GCGATTTTTATT-------AAGTTTTTAACCCACACCGCCCGTC--T---TTAGAGACACTCA----CC------------ACTAACCAAAAATCCACGT----GATCA----------------------------------AC---------------CAG--ATCT-------GAGATC-----ACCCCGACTAATTC----CAAT---------------------TTT-CTCCCTCCCTTT-TCT----------AACCAGGACGAGCCGA-CTC--CTCCCCTGCCCGCCG------------TAAATAATCAGGAGCTCAGTGC
droBia1 scf7180000302411:934097-934391 + AAGGCGAAGATGATGAGGCA---GACG---------------------ATGTTGACGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACTCTTTTGAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCCTCTTTGTTTCATTTT-TCGTTT-------GCGATATTA-TT-------GAGTTTTTAACCCACACCACCCGTC--T---GAAGGGACACTCA----CC------------ACTAACCACAT------------------------------------------TT-----CAATC--------------GAG--GTTT-------TAGAAC-----ATCCCAACTAAATC----GAAA---------------------TTT--TCCC--CC-TT-TCT----------AACCAGGACGAGCCGA-CGC--CGCCAATGCCCTCCG------------TGAACAACCAGGAACTCAGCGC
droTak1 scf7180000415789:195587-195884 - AAGGCGAAGATGATGAGGCA---GACG---------------------AAGTTGACGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACACTTTTGAA------------T---AGA----TCT-TAATTTC--CACA------A--------CCCCCTTTGTTTCATTTT-CCGTTT-------GCGATTTTGATT-------AAGTTTTTAACACACTCCACCCGTC--C---GAAGGGGCACTCA----CC------------ACTAACCACAT------------------------------------------TT-----CGAAA--------------GAT-GATCT-------AAGATC-----T-TCCGACTAATTC----CAAA---------------------TT--CTCCCCTCC-TT-TCT----------AACCAGGACGAGCCGA-CGC--CACCCATGCCCGCTG------------CTAACAACCAGGAGCTCAGCGC
droEle1 scf7180000491021:294840-295151 - ATGGCGAAGATGATGATGAAGATGACG---------------------ATGTTGACGCCGATGTGGCTCAACTAGTTGGCAATAAAGAAGCACCTCACTTTTAAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCCCCTTTGTTTCATTTT-CTGTTT-------GCGATTTTGATT-------GAGTTTTTAACCCACACCACCAG----------ATACACACTCA----CC--------AC--ACTAACCAAAGATCCACGC----TTTGA----------------------------------AC---------------CGGAAT-TTT----ATCACGTC-----AGCCCGACTAATTC----GAAA---------------------ATT-TTCCCCCCCTTT-TCC----------AAACAGGATGAGCCAG-CGC--CGCCTCTGCCCGCCG------------TGAACAACCAGGAGCTCAGTGC
droRho1 scf7180000779349:29430-29740 - ATGGCGAAGATAATGAAGAT---GACG---------------------ATGTTGACGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACACTTTTGAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCCCCTTTGTTTCATTTT-CCGTTT-------GCGATTTTGATT-------GAGTTTTTAACCCACACCACCAGTC--C---ATAGAGACACTCA----CC------------ACTAACCAAAGACCCACGT----TTTGA----------------------------------AC---------------CAGAAC-CTT----TTCACGTC-----AGCCCGACTAATTC----AAAA---------------------TTT-CTCCCCCCT-TT-TCC----------TACCAGGATGAGCCGA-CGC--CGCCTTTGCCCGCCG------------TGAACAACCAGGAGCTCAGTGC
droFic1 scf7180000453850:564127-564427 + AAGGCGAAGATGATGAT------GACG---------------------ATGTTGACGCCGATGCGGCTCAACTAGTTGGCAATAAAGAATCACCACACTTTTGAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCCTTCTTGTTTCATTTT--TGTTT-------GATACTT----T-------AAGTTTCTAACCCGCTTCACCCGTC--C---ATATGGACACCCA----CC------------ACTAACCCAAGACCCAAGT----TTTGA----------------------------------AT---------------CA-CAT-CAT----GCCACGTC-----CGCCAGACTAATTC----CAAA---------------------TTT-CTCCCC-CT-TT-TTC----------AACCAGGACGAGCCGA-CGC--CGCCTCTACCTGCAG------------TAAATAACCAGGAGCTCAGTGC
droKik1 scf7180000302461:603771-604090 + AAGGCGACGAAGAAGAAGAAGATGACG---------------------ATGTTGACGCCGATGCGGCGCAACTAGTTGGCAATAAAGAAGCTCCGCACTTTTGAA------------T---AGA----CC--CAATTGC--CACA------A--C---ACCCCCTTTTGTTTCATTTT-CCGTTT-------GCGATTTCGTTT-------GAGTT-TTAACCCACACCACACTCA--C---ATAGAGACACCAA----CA------AGCT--ACTAACCAAAGATCCTCGT----TTTGA----------------------------------AC---------------CG-CAC-TTT----ACCTGGCA-----AAACCGACTAATTC----CAAA--------------------ATTT-CTCCACCCATTT-TCC----------TACCAGGACGAGCCAA-CGC--CACCCATGCCTGCCG------------CCAACAACCAGGAGCTGAGTGC
droAna3 scaffold_13088:493500-493810 + AGGGCGATGATAATGATGAT---GAAG---------------------ATTTTAATGCCGATGTGGCGCAACTAGTTGGCAATAAAGAAGCACCACACTTTTAAA------------A---AGA----CTTCCAATTTC--CATT------A--------CTCCTTTTGTTTCATTTT-GTGTTT-CCGTTTCCGATTTTA-TTTCGTTATTAGTTTCTAACCCC-TCCTCA------C---ATAGAGACAC-CA----CC------------ACTAACCACAGAATTCAGT----TTTGAGAAACCTA-------------------------------------------------------CTAC--------C----ATGAACTAATCG----CAAA---------------------TTT-ATCCACTCCTCT-CCC----------AACCAGGACGAACCGA-CGC--CACCACTGCCCTCCG------------CTAACAACCAGGAGCTGAGCGC
droBip1 scf7180000396413:548521-548832 + AGGGCGATGATAATGAAGAT---GAAG---------------------ATTTAAATGCCGATGTGGCGCAACTAGTTGGCAATAAAGAAGCACCACACTTTTAAA----------------AGA----CTTACAATTTC--CATT------A--------CTCCTTTTGTTTCATTTT-GTGTTTTTTGTTTCCGATTTTA-TATCGTTATTAGTTTCTAACCCCCTCCACA------C---ATAGAGACAC-CA----CC------------ACTAACCACAGAATTCAGT----TTTGAGACACCTA-------------------------------------------------------CTAC--------C----ATCAACTAATCT----CAAA---------------------TTT-ATCCACTCCTCT-CCC----------AACCAGGACGAGCCGA-CGC--CACCACTGCCTTCCG------------CTAACAACCAGGAGCTAAGCGC
dp5 2:21599089-21599392 - CTGATATTGATGATGATGA------------------------------------------TGAGGCTGAACTAGTTGACAATAAAGAAGCACCACACATTTGAA------------T---AGA----TTT-TATTTGC--G--A------A--------CCTTTTTTGTTTCATTTTTACGTTT-------ATGTTC-----------------CCCTAACCCCCCGCACCCCATCGCCTCGCCGCGAC----A----CA------------ACTAACCCACTGATTGAGTTCCTTTTAAGCCACAACCAACTCATTAATTTCCTTT-------------------------------------------ATT------CCCCAACTAATGC----GAAA---------------------ATC-TTTCACCT--TT-TCTTTTCTG--CCTCCCAGGATGAGCCGA-CAC--CGCCCATGCCCGCCG------------CCACTAACCAAGAGCTCAGCGC
droPer2 scaffold_3:4384117-4384420 - CTGATATTGATGATGATGA------------------------------------------TGAGGCTGAACTAGTTGACAATAAAGAAGCACCACACATTTGAA------------T---AGA----TTT-TAATTGC--G--A------A--------CCTTTTTTGTTTCATTTTTACGTTT-------ATGTTC-----------------CCCTAACCCCCCGCACCCCATCGCCTCGCCGCGAC----A----CA------------ACTAACCCACTGACTGAGTTTCTTTTAAGCCACAACCAACCCATTAATTTCCTTT-------------------------------------------ATT------CCCCAACTAATGC----GAAA---------------------ATC-TTTCACCT--TT-TCTTTTCTG--CCTCCCAGGATGAGCCGA-CAC--CGCCCATGCCCGCCG------------CCACTAACCAAGAGCTCAGCGC
droWil2 scf2_1100000004943:12738994-12739297 - ATGATGATCATACCAATAAT---GAT---CGTGA------TAATAATGAAGATGATGATGATGAAGAT---------------------------CGCATTTGAA------------T---AGAAATTTTT-TGATTTT--TATA--GAAAAATCTTTTGTCTTTTTTGTTTCATTTC-CTGTAT-------------------------------TCTAACCTCCTGTATC-CATTGCTGCACCCCCAC----AGTCCAGACTAACACCA--ACTCACTCTAAG-TT----------------------------------------------------------------TAG--TTT--------TTGGTT-----AATTCAACTAATAC----GTGG---------------------GATATGCTATAT--AT-GTT----------TTACAGGATGAACCGA-CAC--CGCCCATGCCAGCAGCATCCACATCGGCCAACAATCAAGAGTTAAGTGC
droVir3 scaffold_12855:9939327-9939612 + CTGCCGTTGATGACGACAGT---GA---------------------------------TGATGAGGCGCAGCTAGTTGGCAATAAAGAAGCACACAACGTTTGACGCCGTTTGCCAAA---CGA----TTT-ATATAGA----AA------T--------ACTTTATTGTTTTATTTT-ATT--T-------AAT------------------GCTTTTAACATACGC--------------------------A----C---------GT--GCTAACCAAAGTTTTTTGT----TT----------------------------------------ATGTGTTAACCAAT---------------------AA-C-GGCCTCAAATAATTCGCTTCAAA---------------------TTT--TCCTTCTT-TT-TCT--GCTGCGCCTCCTAGGACGAACCCA-CAC--CGCCTATACCCGCTGG---------CCCCAACAATCAAGAGCTAAGCGC
droMoj3 scaffold_6540:22948883-22949211 - CTGATGATGATGATGATGAT---GATG---TTGATCGTTATCATGATCATGATGATGATGATGAGACGCAGCTAGTTGGCAATAAAGAAACACTTAGCGTTTGATGCCTAATGGCAAAAGGCGA----TTT-ATATATATGTATA------C--------ATCTTTTTGTTTTATTTT-ATT--T-------AATATT-----------------TTTCAATTCGCAC-----------------------------------------GC--TCTAACCCAAAGTCTTTGT----TGTGT----------------------------------TT-ATTAATTAACCCAT---------------------TACCCGGTCTTAACTAATACGCTTCAAA---------------------TTT--TCCTTCTA-TT-TTT--GCTGCGGCTGATAGGACGAACCAG-CTC--CGCCTCTGCCAGCTAG---------TGCCAACAATCAAGAGCTGAGCGC
droGri2 scaffold_15074:4273413-4273758 - ATGATGATGATGATGATGAT---AATGATATTGA------TCATG---ATGATGATGACGATGATGAGCAGCTAGTTGGCAATAAAGAAGCACACAACTTTT-------------------------------AAGTTT--CACATCGAGACATA-----TTTTATTTGTTTTATTTT-ATGTTATT-----TCGTTTTTCACTTTGTT--G--TTACTAACACTC----------------------------A----AGCA----T-GTCTCCTAACAAAAGCCGTT-----------------------------TATTTCTGTTGTTTTCAAT---------------GA-CAT-TTTTACTAA--------T----TTT------TGC----TAAAAATAACCTTTCTCTTCTCGTATCT-CTCTTCCTT-TTTTTG-TACTGCATCTGGTAGGATGAGCCCAGTGCCCCCCCACCGCCCGTCGG---------CAGCAACAATCAGGAGCTGAGCGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAGGCGAAGATGATGAAGAT---GACG---------------------ATGTTGATGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACTCTTTTGAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCCCCTTTGTTTCATTTT-GCGTTT-------TAGATTTTG-TT-------GACTTTCTAACCCACACCGCCACTT--C---ATTAAGACACTAA-----------------------CTAA------------------------------CACAGC----------------------------------CAG--ATCT-------TGGATC-----ACCTAGACTAATTC----CAAA---------------------TTT-CTCCACCCC-TT-TCT----------AACCAGGACGAACCAA-CGC--CGCCCCTGCCAGCCG------------TCAACAACCAGGAGCTCAGTGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCG------------TCAACAACCAGGAGC.......2112.00220000000000000000
........GATGATGAAGAT---GACG---------------------ATGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
...................................................................................................................................................................................................ATTTTG-TT-------GACTTTCTAACCC...........................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..............GAAGAT---GACG---------------------ATGTTGATGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
droSec2
AAGGCGAAGATGATGAAGAT---GACG---------------------ATGTTGATGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACTCTTTTGAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCCCCTTTGTTTCATTTT-GCGTTT-------TAGATTTTG-TT-------AACTTTATAACCCACAC------TT--C---ATTAAGACACTAA-----------------------CTAA------------------------------CGCAGC----------------------------------CAG--ATCT-------TGGATC-----ACCTAGACTAATTC----CAAA---------------------TTT-CTCCACCCC-TT-TCT----------AACCAGGACGAACCAA-CGC--CGCCCATGCCAGCCG------------TCAACAACCAGGAGCTCAGTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.AGGCGAAGATGATGAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
..................................................GTTGATGCCGATGCGGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
dm3
AAGGCGAAGATGATGAAGAT---GACG---------------------ATGTTGATGCCGAAGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACTCTTTTGAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCACCTTTGTTTCATTTT-GCGTTA-------TAGATTTTG-TT-------GACTTTCTAACCCACACCGTCACTT--C---ATTAAGACAGTAA-----------------------CTAA------------------------------CACGGC----------------------------------CAG--ATCT-------TGGATC-----ACCTCGACTAATTC----CACA---------------------TTT-TTCCACCCT-TT-TCT----------AACCAGGATGAACCAA-CGC--CGCCCCTGCCAGCCG------------TCAACAACCAGGAGCTCAGTGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....GAAGATGATGAAGAT---GACG---------------------ATGTTGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000010000000
.....GAAGATGATGAAGAT---GACG---------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.........................CG---------------------ATGTTGATGCCGAAGCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000
...................................................................................................................................................................CCTTTGTTTCATTTT-GCGTTA-------...........................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010
.....GAAGATGATGAAGAT---GACG---------------------ATGTTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000000000000000000000000000000000000000000
.........ATGATGAAGAT---GACG---------------------ATGTTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
......................................................................................................................................................................................................TTG-TT-------GACTTTCTAACCCACA........................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GAAGATGATGAAGAT---GACG---------------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
AAGGCGAAGATGATGAAGAT---GAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TGATGAAGAT---GACG---------------------ATGTTGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................CGAAGCGGCTCAACTAGTTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
......AAGATGATGAAGAT---GACG---------------------ATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................AAGCGGCTCAACTAGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GAT---GACG---------------------ATGTTGATGCCGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................CAACTAGTTGGCAATAAAGAAGCACCACTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CGAAGATGATGAAGAT---GACG---------------------ATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-CGC--CGCCCCTGCCAGCCG------------TCACT.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CATTTT-GCGTTA-------TAGATTTTG-.................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..........................................................CGAAGCGGCTCAACTAGTTGGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TCT----------AACCAGGATGAACCA........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGGATGAACCAA-CGC--CGC..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------TCAACAACCAGGAGCTCAG...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCT-TT-TCT----------AACCAGGATGA............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TT-GCGTTA-------TAGATTTTG-TT-------GA......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................CGACTAATTC----CACA---------------------TTT-TTCCACC..........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG------------TCAACAACCAGGAGCTCAG...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
................................................................................................................................................................................................................................ACACCGTCACTT--C---ATTAAGAC.................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCCG------------TCAACAACCAGGAGCTCAGTG.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................ATGCCGAAGCGGCTCAACTAGTTGGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................ACTAGTTGGCAATAAAGAAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................ACG---------------------ATGTTGATGCCGAAGCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCG------------TCAACAACCAGGAGC.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-CGC--CGCCCCTGCCAGCCG------------TC....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TT-TCT----------AACCAGGATGAACCA........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
....CGAAGATGATGAAGAT---GA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................................................................................................................................................................CACCTTTGTTTCATTTT-GCGT....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCCG------------TCAACAACCAGGAGCT......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------TCAACAACCAGGAGCTCAGTGC2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................ACTAGTTGGCAATAAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TTTGAA------------T---AGA----TTT-TAATTTC--CACA------....................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..........TGATGAAGAT---GACG---------------------ATGTTGATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............AAGAT---GACG---------------------ATGTTGATGCCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................CACTT--C---ATTAAGACAGTAA-----------------------CTAA------------------------------CACGGC----------------------------------...........................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCAA-CGC--CGCCCCTGCCAGCC...................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TTTT-GCGTTA-------TAGATTTTG-TT-------........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACCAGGAGCTCAGTGC1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
.AGGCGAAGATGATGAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GAAGATGATGAAGAT---GACG---------------------AA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droEre2
AAGGCGCAGATGATGATGAT---GAAG---------------------ATGTTGATGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACTCTTTTGAA------------T---AGA----TTT-TAATTTC--GACA------A--------CCCCCTTTGTTTCATTTT-ATGTTT-------TAGATTTTG-TT-------GACTTCTTAACCCACACCGCCAATT--C---ATTAAGACACTAA-----------------------CCGCATAGC-----------------------------------------------------------------CAG--ATCT-------TGGATC-----ACCTCGACTAATCC----CAAA---------------------TTT-CTCCACCCC-TT-TCT----------AACCAGGACGAACCGA-CCC--CGCCTTTGCCATCCG------------TTAACAACCAGGAGCTCAGTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....GCAGATGATGATGAT---GAAG---------------------ATGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000110
...........GATGATGAT---GAAG---------------------ATGTTGATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
........................................................................TAGTTGGCAATAAAGAAGCACCACTCTTT......................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
....CGCAGATGATGATGAT---GAAG---------------------ATGTTGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACCGA-CCC--CGCCTTTGCCATCCG------------......................2511.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAACCGA-CCC--CGCCTTT..........................................2011.0011000000
..................AT---GAAG---------------------ATGTTGATGCCGATGCGGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.....GCAGATGATGATGAT---GAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010001000
........GATGATGATGAT---GAAG---------------------AT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.1110000010
droYak3
AAGGCGAAGATGATGAAGAT---AACG---------------------ATGTTGATGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACTCTTTTAAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCCCCTTTGTTTCATTTT-ATGTTT-------TAGATTTCA-TT-------AACTTCTTAACCAACACCGTCAATT--C---ATTAAGACACTAA-----------------------CCACATAGC-----------------------------------------------------------------CAG--ATCT-------TGGACC-----ACCTTGACTAATTC----CAAA---------------------TTT-CTCCACCCC-TT-TCT----------AACCAGGACGAACCAG-CCC--CGCCTTTGCCCTCCG------------TTAACAACCAGGAGCTCAGTGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....GAAGATGATGAAGAT---AACG---------------------ATGTTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
............ATGAAGAT---AACG---------------------ATGTTGATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACCAG-CCC--CGCCTTTGCC.......................................2111.00101000000000
........................ACG---------------------ATGTTGATGCCGATGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
droEug1
AAGGCGAAGATGATGAAGAA---AATG---------------------ACGTTGTCGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACATTTTTGAA------------T---AGA----TTTTTAATTTC--CACA------T-----------CCTTTGTTTCATTTT-TCGTTT-------GCGATTTTTATT-------AAGTTTTTAACCCACACCGCCCGTC--T---TTAGAGACACTCA----CC------------ACTAACCAAAAATCCACGT----GATCA----------------------------------AC---------------CAG--ATCT-------GAGATC-----ACCCCGACTAATTC----CAAT---------------------TTT-CTCCCTCCCTTT-TCT----------AACCAGGACGAGCCGA-CTC--CTCCCCTGCCCGCCG------------TAAATAATCAGGAGCTCAGTGCSizeHit CountTotal NormTotal
No Reads
droBia1
AAGGCGAAGATGATGAGGCA---GACG---------------------ATGTTGACGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACTCTTTTGAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCCTCTTTGTTTCATTTT-TCGTTT-------GCGATATTA-TT-------GAGTTTTTAACCCACACCACCCGTC--T---GAAGGGACACTCA----CC------------ACTAACCACAT------------------------------------------TT-----CAATC--------------GAG--GTTT-------TAGAAC-----ATCCCAACTAAATC----GAAA---------------------TTT--TCCC--CC-TT-TCT----------AACCAGGACGAGCCGA-CGC--CGCCAATGCCCTCCG------------TGAACAACCAGGAACTCAGCGCSizeHit CountTotal NormTotal
No Reads
droTak1
AAGGCGAAGATGATGAGGCA---GACG---------------------AAGTTGACGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACACTTTTGAA------------T---AGA----TCT-TAATTTC--CACA------A--------CCCCCTTTGTTTCATTTT-CCGTTT-------GCGATTTTGATT-------AAGTTTTTAACACACTCCACCCGTC--C---GAAGGGGCACTCA----CC------------ACTAACCACAT------------------------------------------TT-----CGAAA--------------GAT-GATCT-------AAGATC-----T-TCCGACTAATTC----CAAA---------------------TT--CTCCCCTCC-TT-TCT----------AACCAGGACGAGCCGA-CGC--CACCCATGCCCGCTG------------CTAACAACCAGGAGCTCAGCGCSizeHit CountTotal NormTotal
No Reads
droEle1
ATGGCGAAGATGATGATGAAGATGACG---------------------ATGTTGACGCCGATGTGGCTCAACTAGTTGGCAATAAAGAAGCACCTCACTTTTAAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCCCCTTTGTTTCATTTT-CTGTTT-------GCGATTTTGATT-------GAGTTTTTAACCCACACCACCAG----------ATACACACTCA----CC--------AC--ACTAACCAAAGATCCACGC----TTTGA----------------------------------AC---------------CGGAAT-TTT----ATCACGTC-----AGCCCGACTAATTC----GAAA---------------------ATT-TTCCCCCCCTTT-TCC----------AAACAGGATGAGCCAG-CGC--CGCCTCTGCCCGCCG------------TGAACAACCAGGAGCTCAGTGCSizeHit CountTotal NormTotal
No Reads
droRho1
ATGGCGAAGATAATGAAGAT---GACG---------------------ATGTTGACGCCGATGCGGCTCAACTAGTTGGCAATAAAGAAGCACCACACTTTTGAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCCCCTTTGTTTCATTTT-CCGTTT-------GCGATTTTGATT-------GAGTTTTTAACCCACACCACCAGTC--C---ATAGAGACACTCA----CC------------ACTAACCAAAGACCCACGT----TTTGA----------------------------------AC---------------CAGAAC-CTT----TTCACGTC-----AGCCCGACTAATTC----AAAA---------------------TTT-CTCCCCCCT-TT-TCC----------TACCAGGATGAGCCGA-CGC--CGCCTTTGCCCGCCG------------TGAACAACCAGGAGCTCAGTGCSizeHit CountTotal NormTotal
No Reads
droFic1
AAGGCGAAGATGATGAT------GACG---------------------ATGTTGACGCCGATGCGGCTCAACTAGTTGGCAATAAAGAATCACCACACTTTTGAA------------T---AGA----TTT-TAATTTC--CACA------A--------CCCTTCTTGTTTCATTTT--TGTTT-------GATACTT----T-------AAGTTTCTAACCCGCTTCACCCGTC--C---ATATGGACACCCA----CC------------ACTAACCCAAGACCCAAGT----TTTGA----------------------------------AT---------------CA-CAT-CAT----GCCACGTC-----CGCCAGACTAATTC----CAAA---------------------TTT-CTCCCC-CT-TT-TTC----------AACCAGGACGAGCCGA-CGC--CGCCTCTACCTGCAG------------TAAATAACCAGGAGCTCAGTGCSizeHit CountTotal NormTotal
No Reads
droKik1
AAGGCGACGAAGAAGAAGAAGATGACG---------------------ATGTTGACGCCGATGCGGCGCAACTAGTTGGCAATAAAGAAGCTCCGCACTTTTGAA------------T---AGA----CC--CAATTGC--CACA------A--C---ACCCCCTTTTGTTTCATTTT-CCGTTT-------GCGATTTCGTTT-------GAGTT-TTAACCCACACCACACTCA--C---ATAGAGACACCAA----CA------AGCT--ACTAACCAAAGATCCTCGT----TTTGA----------------------------------AC---------------CG-CAC-TTT----ACCTGGCA-----AAACCGACTAATTC----CAAA--------------------ATTT-CTCCACCCATTT-TCC----------TACCAGGACGAGCCAA-CGC--CACCCATGCCTGCCG------------CCAACAACCAGGAGCTGAGTGCSizeHit CountTotal NormTotal
No Reads
droAna3
AGGGCGATGATAATGATGAT---GAAG---------------------ATTTTAATGCCGATGTGGCGCAACTAGTTGGCAATAAAGAAGCACCACACTTTTAAA------------A---AGA----CTTCCAATTTC--CATT------A--------CTCCTTTTGTTTCATTTT-GTGTTT-CCGTTTCCGATTTTA-TTTCGTTATTAGTTTCTAACCCC-TCCTCA------C---ATAGAGACAC-CA----CC------------ACTAACCACAGAATTCAGT----TTTGAGAAACCTA-------------------------------------------------------CTAC--------C----ATGAACTAATCG----CAAA---------------------TTT-ATCCACTCCTCT-CCC----------AACCAGGACGAACCGA-CGC--CACCACTGCCCTCCG------------CTAACAACCAGGAGCTGAGCGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................GCAACTAGTTGGCAATAAAGAAGCACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------TTT-ATCCACTCCTCT-CCC----------AACCAGGAC..............................................................2811.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAACCAGGAGCTGAGC..1911.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAACCGA-CGC--CACCACTGCCCTCC...................................2711.001100000
droBip1
AGGGCGATGATAATGAAGAT---GAAG---------------------ATTTAAATGCCGATGTGGCGCAACTAGTTGGCAATAAAGAAGCACCACACTTTTAAA----------------AGA----CTTACAATTTC--CATT------A--------CTCCTTTTGTTTCATTTT-GTGTTTTTTGTTTCCGATTTTA-TATCGTTATTAGTTTCTAACCCCCTCCACA------C---ATAGAGACAC-CA----CC------------ACTAACCACAGAATTCAGT----TTTGAGACACCTA-------------------------------------------------------CTAC--------C----ATCAACTAATCT----CAAA---------------------TTT-ATCCACTCCTCT-CCC----------AACCAGGACGAGCCGA-CGC--CACCACTGCCTTCCG------------CTAACAACCAGGAGCTAAGCGCSizeHit CountTotal NormTotal
No Reads
dp5
CTGATATTGATGATGATGA------------------------------------------TGAGGCTGAACTAGTTGACAATAAAGAAGCACCACACATTTGAA------------T---AGA----TTT-TATTTGC--G--A------A--------CCTTTTTTGTTTCATTTTTACGTTT-------ATGTTC-----------------CCCTAACCCCCCGCACCCCATCGCCTCGCCGCGAC----A----CA------------ACTAACCCACTGATTGAGTTCCTTTTAAGCCACAACCAACTCATTAATTTCCTTT-------------------------------------------ATT------CCCCAACTAATGC----GAAA---------------------ATC-TTTCACCT--TT-TCTTTTCTG--CCTCCCAGGATGAGCCGA-CAC--CGCCCATGCCCGCCG------------CCACTAACCAAGAGCTCAGCGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........GATGATGATGA------------------------------------------TGAGGCTGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2219.0090020100051
.....ATTGATGATGATGA------------------------------------------TGAGGCTGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040010000030
........GATGATGATGA------------------------------------------TGAGGCTGAACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020020000000
...........GATGATGA------------------------------------------TGAGGCTGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020010100000
........GATGATGATGA------------------------------------------TGAGGCTGAACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020110000000
.............................................................TGAGGCTGAACTAGTTGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........TGATGATGA------------------------------------------TGAGGCTGAACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000001
...............................................................AGGCTGAACTAGTTGACAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........GATGATGA------------------------------------------TGAGGCTGAACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
.................GA------------------------------------------TGAGGCTGAACTAGTTGACAATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
droPer2
CTGATATTGATGATGATGA------------------------------------------TGAGGCTGAACTAGTTGACAATAAAGAAGCACCACACATTTGAA------------T---AGA----TTT-TAATTGC--G--A------A--------CCTTTTTTGTTTCATTTTTACGTTT-------ATGTTC-----------------CCCTAACCCCCCGCACCCCATCGCCTCGCCGCGAC----A----CA------------ACTAACCCACTGACTGAGTTTCTTTTAAGCCACAACCAACCCATTAATTTCCTTT-------------------------------------------ATT------CCCCAACTAATGC----GAAA---------------------ATC-TTTCACCT--TT-TCTTTTCTG--CCTCCCAGGATGAGCCGA-CAC--CGCCCATGCCCGCCG------------CCACTAACCAAGAGCTCAGCGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........GATGATGATGA------------------------------------------TGAGGCTGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................22111.00111010000
...........GATGATGA------------------------------------------TGAGGCTGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.004400000
..............GATGA------------------------------------------TGAGGCTGAACTAGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.004300001
........GATGATGATGA------------------------------------------TGAGGCTGAACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droWil2
ATGATGATCATACCAATAAT---GAT---CGTGA------TAATAATGAAGATGATGATGATGAAGAT---------------------------CGCATTTGAA------------T---AGAAATTTTT-TGATTTT--TATA--GAAAAATCTTTTGTCTTTTTTGTTTCATTTC-CTGTAT-------------------------------TCTAACCTCCTGTATC-CATTGCTGCACCCCCAC----AGTCCAGACTAACACCA--ACTCACTCTAAG-TT----------------------------------------------------------------TAG--TTT--------TTGGTT-----AATTCAACTAATAC----GTGG---------------------GATATGCTATAT--AT-GTT----------TTACAGGATGAACCGA-CAC--CGCCCATGCCAGCAGCATCCACATCGGCCAACAATCAAGAGTTAAGTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAACCGA-CAC--CGCCC............................................1811.00110000
...............................................................................................................................................................................................................................................................................................................................................................................................CAACTAATAC----GTGG---------------------GATATGCTA............................................................................................2311.00100010
................TAAT---GAT---CGTGA------TAATAATGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................TAATAC----GTGG---------------------GATATGCTATAT--.......................................................................................2211.00100001
........................................................GATGATGAAGAT---------------------------CGCATTTGAA------------T---AGAA..............................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
.................AAT---GAT---CGTGA------TAATAATGAAGATGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
.............................................................................................................................ATTTTT-TGATTTT--TATA--GA......................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.....................................................GATGATGATGAAGAT---------------------------CGCAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.......................GAT---CGTGA------TAATAATGAAGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACATCGGCCAACAATCAAGA.........2411.00100010
............................................AATGAAGATGATGATGATGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100001
...............................................GAAGATGATGATGATGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................18140.07100010
droVir3
CTGCCGTTGATGACGACAGT---GA---------------------------------TGATGAGGCGCAGCTAGTTGGCAATAAAGAAGCACACAACGTTTGACGCCGTTTGCCAAA---CGA----TTT-ATATAGA----AA------T--------ACTTTATTGTTTTATTTT-ATT--T-------AAT------------------GCTTTTAACATACGC--------------------------A----C---------GT--GCTAACCAAAGTTTTTTGT----TT----------------------------------------ATGTGTTAACCAAT---------------------AA-C-GGCCTCAAATAATTCGCTTCAAA---------------------TTT--TCCTTCTT-TT-TCT--GCTGCGCCTCCTAGGACGAACCCA-CAC--CGCCTATACCCGCTGG---------CCCCAACAATCAAGAGCTAAGCGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................GATGAGGCGCAGCTAGTTGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002001000000000000001000000000000000000000000000000000000000000000
................................................................................AATAAAGAAGCACACAACGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AATTCGCTTCAAA---------------------TTT--TCCT............................................................................................2012.002000000000000000000000000000000000000000000000000000000000000002
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--CGCCTATACCCGCTGG---------CCCCAAC.................2411.001000000000000000000000000000000000000000000000000000000000000001
............................................................ATGAGGCGCAGCTAGTTGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG---------CCCCAACAATCAAGAGCTAAGC..2411.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................GTTTGACGCCGTTTGCCAAA---C.................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG---------CCCCAACAATCAAGAG........1811.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
CTGATGATGATGATGATGAT---GATG---TTGATCGTTATCATGATCATGATGATGATGATGAGACGCAGCTAGTTGGCAATAAAGAAACACTTAGCGTTTGATGCCTAATGGCAAAAGGCGA----TTT-ATATATATGTATA------C--------ATCTTTTTGTTTTATTTT-ATT--T-------AATATT-----------------TTTCAATTCGCAC-----------------------------------------GC--TCTAACCCAAAGTCTTTGT----TGTGT----------------------------------TT-ATTAATTAACCCAT---------------------TACCCGGTCTTAACTAATACGCTTCAAA---------------------TTT--TCCTTCTA-TT-TTT--GCTGCGGCTGATAGGACGAACCAG-CTC--CGCCTCTGCCAGCTAG---------TGCCAACAATCAAGAGCTGAGCGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................CATGATGATGATGATGAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003020010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTCTGCCAGCTAG---------TGCCAAC.................2311.001100000
..........................................................................................CACTTAGCGTTTGATGCCTAATGGCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-CTC--CGCCTCTGCCAGC....................................1811.001100000
...........................................................................................ACTTAGCGTTTGATGCCT..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.......................GATG---TTGATCGTTATCATGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................TTGATCGTTATCATGATCATGATGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
....TGATGATGATGATGAT---GATG---TTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.152010001
.....GATGATGATGATGAT---GATG---TTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23190.051000001
........GATGATGATGAT---GATG---TTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
.........ATGATGATGAT---GATG---TTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
droGri2
ATGATGATGATGATGATGAT---AATGATATTGA------TCATG---ATGATGATGACGATGATGAGCAGCTAGTTGGCAATAAAGAAGCACACAACTTTT-------------------------------AAGTTT--CACATCGAGACATA-----TTTTATTTGTTTTATTTT-ATGTTATT-----TCGTTTTTCACTTTGTT--G--TTACTAACACTC----------------------------A----AGCA----T-GTCTCCTAACAAAAGCCGTT-----------------------------TATTTCTGTTGTTTTCAAT---------------GA-CAT-TTTTACTAA--------T----TTT------TGC----TAAAAATAACCTTTCTCTTCTCGTATCT-CTCTTCCTT-TTTTTG-TACTGCATCTGGTAGGATGAGCCCAGTGCCCCCCCACCGCCCGTCGG---------CAGCAACAATCAGGAGCTGAGCGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................ATATTGA------TCATG---ATGATGATGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101
...........................................TG---ATGATGATGACGATGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10202

Generated: 05/19/2015 at 02:47 PM