ID:

dsi_2296

 Coordinate:

3l:16090337-16090486 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.6 -5.6 -5.5 -5.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CAAGAACACAAGAAAGAGCTGGCGATATAGGAGCATTAAGCAGAACCGACAACTCCAACTGAAAGGCGGCCATTGTTAGTTGGAGGTGGTTTCCCTTTTCCCTTTTCCCTGTTCCATTTAACCTTTTCCAATTCGATTTCTAGCTAACGACCCAACCAACAGCTGATCAAAGAACGTATCTCTTTCGCTATCATTCGCAGGTAAAATGTACGCGGTAATTGGCCGGCGGCACGGCAAAATCCTCTCCGGC
***********************************************************************************....................................((..........(((......(((((...............)))))......))).........))***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 GSM343915
embryo
 M053
female body
 M024
male body
...............................................................................................................................................................................................................................CGGCGGCACGGCAAAATCCTCTC.... 23 0 1 2.00 2 0 2 0 0 0 0 0 0
..................................................................................................................................................................................................TGTTAGGTAAAATGTACGCGGTAAT............................... 25 3 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................AGCTGATCAAAGAACGTATCTCTTT................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGGTAAAATGTACGCGGTAATTGGC........................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................................AGGTGGTTTCCCTTTTCCC.................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................AGCAGAACCGACAACTCCAACTGAAAGG........................................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................CTGAAAGGCGGCCATGTTT............................................................................................................................................................................. 19 2 3 0.33 1 0 0 0 0 1 0 0 0
...................................................................GGCCATTCTTAGTTTGCGGT................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................................................GGCAAAATCCTCACCAGC 18 2 15 0.07 1 0 0 0 0 0 0 1 0
.............................................................................................................TGTACCATTTAACCTTCGC.......................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 1 0 0
...................................TTAAGAGGAACCGTCAAC..................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTTCTTGTGTTCTTTCTCGACCGCTATATCCTCGTAATTCGTCTTGGCTGTTGAGGTTGACTTTCCGCCGGTAACAATCAACCTCCACCAAAGGGAAAAGGGAAAAGGGACAAGGTAAATTGGAAAAGGTTAAGCTAAAGATCGATTGCTGGGTTGGTTGTCGACTAGTTTCTTGCATAGAGAAAGCGATAGTAAGCGTCCATTTTACATGCGCCATTAACCGGCCGCCGTGCCGTTTTAGGAGAGGCCG
*****************************************************************....................................((..........(((......(((((...............)))))......))).........))*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
..................................................................................................AGGGAAAAGGGACAAGGTA..................................................................................................................................... 19 0 1 3.00 3 3 0 0 0 0 0 0
...................................................................................................GGGAAAAGGGACAAGGTA..................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0
.........................................................................................................................................................TTGGTTATCGACTAGTTCCT............................................................................. 20 2 2 1.50 3 0 3 0 0 0 0 0
...........................................................................................................................................................GGTTGTCGACTAGTT................................................................................ 15 0 1 1.00 1 0 1 0 0 0 0 0
................TCGACCGCTAGATCC........................................................................................................................................................................................................................... 15 1 5 0.40 2 0 0 1 0 1 0 0
..................................................................................................................................................................GACTTGTTTCTAGCATAG...................................................................... 18 2 3 0.33 1 0 0 0 1 0 0 0
........................................................................................................................................................GTTTGTTATCGACTAGTTCCT............................................................................. 21 3 5 0.20 1 0 1 0 0 0 0 0
..........................................CTTGGCTGTTGAGAT................................................................................................................................................................................................. 15 1 7 0.14 1 0 1 0 0 0 0 0
....................................................................................CCAACAAAGGGAAAAGTG.................................................................................................................................................... 18 2 7 0.14 1 0 1 0 0 0 0 0
.............................................................................................GGAAAAGTGGAAAGGGAC........................................................................................................................................... 18 2 13 0.08 1 0 1 0 0 0 0 0
............TTTCTCGGCCGCTAT............................................................................................................................................................................................................................... 15 1 17 0.06 1 0 0 0 0 0 1 0
....TTGTGTTCTTTCTCC....................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0
................................................................................................AAAGAGAACAGGGACAA......................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0
.........................................................................................AGGAGGAAAAGGGAAAAGGGA............................................................................................................................................ 21 3 20 0.05 1 0 0 0 0 0 0 1
.......................................................................................CCAAAGGGAAAATGGGAA................................................................................................................................................. 18 2 20 0.05 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................GGCCGCCGTGACGTT............. 15 1 20 0.05 1 0 0 1 0 0 0 0
..................................................................................................................GGAAATTGGAAAAGG......................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0
.............................................................................................................AGAAAGTAATTTGGAAAAGGT........................................................................................................................ 21 3 20 0.05 1 0 0 1 0 0 0 0

Generated: 04/24/2015 at 01:54 AM