ID:

dsi_22953

 Coordinate:

3r:10260314-10260463 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATGTTGTTCCTGGTACTCCCGGTTGCCCCAACACTCCTCAATATCCTACAGTGGTTCCGAATAATCCATCTAATCCCAATGTAAATGTTGTTCCTGGTACTCCCGGTTGTCCCAACACTCCTCAATATCCTACAGTGGTTCCGAATAATCCATCTAATCCCAATGTAAATGTTGTTCCTGGTACTCCCGGTTGCCCCAACACTCCTCAATATCCTACAGTGGTTCCAGATAAGCCACTGTGTCCCAATAC
**************************************************((((...........)))).......((((......)))).....((((...((((..((.(((........((((((..((((.(((....((........)).....))).)))).))))))....))).))..)))).)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
..............................................................................................................................................................................................................................TTCCAGATAAGCCACTGTGTCCCA.... 24 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................................ACTCCCGGTTGCCGCACCA................................................. 19 2 7 0.14 1 0 1 0 0
..............ACTCCCGGTTGCCGCACCA......................................................................................................................................................................................................................... 19 2 7 0.14 1 0 1 0 0
..................................................................................CAACGTTGATCCTGGTAC...................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0
....................................................................................................................................................................................................................................GTAAACCGCTGTGTCCCA.... 18 3 20 0.05 1 0 0 0 1
......................................................................................................................................................................CAACGTTGATCCTGGTAC.................................................................. 18 3 20 0.05 1 0 0 1 0

Anti-sense strand reads

TACAACAAGGACCATGAGGGCCAACGGGGTTGTGAGGAGTTATAGGATGTCACCAAGGCTTATTAGGTAGATTAGGGTTACATTTACAACAAGGACCATGAGGGCCAACAGGGTTGTGAGGAGTTATAGGATGTCACCAAGGCTTATTAGGTAGATTAGGGTTACATTTACAACAAGGACCATGAGGGCCAACGGGGTTGTGAGGAGTTATAGGATGTCACCAAGGTCTATTCGGTGACACAGGGTTATG
**************************************************((((...........)))).......((((......)))).....((((...((((..((.(((........((((((..((((.(((....((........)).....))).)))).))))))....))).))..)))).)))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
...............................................................................ACAGTTACAACCAGGTCCA........................................................................................................................................................ 19 3 20 0.20 4 0 4 0 0 0 0 0
...................................................................................................................................................................ACAGTTACAACCAGGTCCA.................................................................... 19 3 20 0.20 4 0 4 0 0 0 0 0
......................................GTTATAGCATGTCACCAACAC............................................................................................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0
..........................................................................................................................GTTATAGCATGTCACCAACAC........................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0
...........................................................................................................TCAGGGATGTGAGGAGT.............................................................................................................................. 17 2 8 0.13 1 0 0 1 0 0 0 0
...............................................TGTAACCAAGGCTCATCAG........................................................................................................................................................................................ 19 3 16 0.06 1 1 0 0 0 0 0 0
...................................................................................................................................TGTAACCAAGGCTCATCAG.................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0
...............................................................TAGGTGTATTAGGGTTAC......................................................................................................................................................................... 18 2 18 0.06 1 0 0 0 1 0 0 0
...................................................................................................................................................TAGGTGTATTAGGGTTAC..................................................................................... 18 2 18 0.06 1 0 0 0 1 0 0 0
......................................................................................................GGCCAACAGGTTTGTAA................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 0 0 1
..................................................................................................................................................................................ACCATGGGGGCCAGC......................................................... 15 2 20 0.05 1 0 0 0 0 1 0 0
..............................................................................................ACCATGGGGGCCAGC............................................................................................................................................. 15 2 20 0.05 1 0 0 0 0 1 0 0
...................................................ACCAAGGCTGATAAGGTCG.................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0
.......................................................................................................................................ACCAAGGCTGATAAGGTCG................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0

Generated: 04/24/2015 at 10:39 AM