ID:

dsi_22914

 Coordinate:

2r:11822371-11822619 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2r_11822620_11822757_-]; CDS [2r_11822620_11822757_-]; exon [2r_11822213_11822370_-]; CDS [2r_11822213_11822370_-]; intron [2r_11822371_11822619_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGTCTGCCACATGATAGCATCGCCTACGGTATCCCTGCCAAGTAACAAAGGTAAGCCAGGCCCAAGGGCGCGAGGAGCACATGGTTACGAATCCGAATGAGCCCTAGTAACCCGTTTTTGCTTACCATCGAGGTATTCCTACATCCGTGAGCAAAGTGTGTAACTAACCGGGTGAATGCGCAACACCCGTATCATTGCCTTGCTTCCGCCGCCACCAAAGCGAAATGATTTCCATCACATGATTTTTGTATTGAATTTGAAACCGTACTCACCCTTATATTACCTTATTTAAATGACAGCATCTTTGGACCGCCCTAAAACCGAAATGTCGCGGGCTGAGGCTGCGGCT
**************************************************(((((...(((....(((.((((((.((((((((((((..................))))))....(((((((((.....(((....)))......))))))))))))))).......((((((.........))))))........)))))).)))...)))..(((.((((((((((....))))......)))))).)))....(((........)))..))))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.....................................................................................................................................................................................................................................................................................................................................ATGTCGCGGGCTGAGGCTGCGGC. 23 0 1 2.00 2 2 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................AATGTCGCGGGCAGAGGCTGC.... 21 1 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................................................................CAGAGCCGTGCTTCCGCCGCC........................................................................................................................................ 21 3 5 1.00 5 0 5 0 0 0 0
....................................................................................................................................................................................................................................................TTTGTATTGGATTTTAAACCGA................................................................................... 22 3 3 0.33 1 0 0 0 1 0 0
.............................................................................................................................................................................................TATCATTACCTTGGTTCCGA............................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 1 0
.............................................................................................................................................................................................................CCGCTGCCACCAAAGCGAATC........................................................................................................................... 21 3 6 0.17 1 0 1 0 0 0 0
............................................................................................................GACCTGTTTTTGCTCACCAT............................................................................................................................................................................................................................. 20 3 9 0.11 1 0 1 0 0 0 0
...............................................................................................................................................TCGGTGGGCAAAGTGTGTA........................................................................................................................................................................................... 19 2 9 0.11 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................CGCGGGCTGTCGCGGCGGC. 19 3 20 0.10 2 0 0 0 0 0 2
...................................................................................................................................................................................................TGCCTTGCTTCAGCCGT......................................................................................................................................... 17 2 11 0.09 1 0 1 0 0 0 0
.................................................................................................................................................................................................AGAGCCGTGCTTCCGCCG.......................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................GAGCATCATTGGACGGCC................................... 18 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

GCAGACGGTGTACTATCGTAGCGGATGCCATAGGGACGGTTCATTGTTTCCATTCGGTCCGGGTTCCCGCGCTCCTCGTGTACCAATGCTTAGGCTTACTCGGGATCATTGGGCAAAAACGAATGGTAGCTCCATAAGGATGTAGGCACTCGTTTCACACATTGATTGGCCCACTTACGCGTTGTGGGCATAGTAACGGAACGAAGGCGGCGGTGGTTTCGCTTTACTAAAGGTAGTGTACTAAAAACATAACTTAAACTTTGGCATGAGTGGGAATATAATGGAATAAATTTACTGTCGTAGAAACCTGGCGGGATTTTGGCTTTACAGCGCCCGACTCCGACGCCGA
**************************************************(((((...(((....(((.((((((.((((((((((((..................))))))....(((((((((.....(((....)))......))))))))))))))).......((((((.........))))))........)))))).)))...)))..(((.((((((((((....))))......)))))).)))....(((........)))..))))).....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR902009
testis
 M023
head
 SRR553487
NRT_0-2 hours eggs
 O002
Head
..........................................................................................................................................................................................................................................................AGCTTAAAATTTGGCATGC................................................................................ 19 3 20 3.90 78 52 21 0 0 0 0 5 0 0 0 0
..........................................................................................................................................................................................................................................................AACTTCAAATTTGGCATG................................................................................. 18 2 6 2.33 14 1 12 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................AGCTTAAACTTTGGCATGC................................................................................ 19 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
................................................................................................................................GCTCCATAAGGATGTAGGCACT....................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................ATGCTTAGGCTTGCTGGCGA.................................................................................................................................................................................................................................................... 20 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AGCTTAAAATTTGGCATGA................................................................................ 19 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................ACTTCAACTTTGGCATGC................................................................................ 18 2 3 1.00 3 0 2 0 0 0 0 1 0 0 0 0
...................................................................................................TCGGGATCAATGGACAAAA....................................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AACTTAAAATTTGGCATGC................................................................................ 19 2 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................GGCTTGAGTGGGAATA....................................................................... 16 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AGCTTAAAATTTGGCATG................................................................................. 18 2 6 0.50 3 3 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGCATAGTAACAGAACCA................................................................................................................................................. 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AACTTCAACTTTGGCATGC................................................................................ 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TGGCTTGAGTGGGAATA....................................................................... 17 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AGCTTCAACTTTGGCATG................................................................................. 18 2 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AACGTTGGCATGAGTG............................................................................. 16 1 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................AACTTCAAATTTGGCATGA................................................................................ 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
....ACGGTGTGCTATCGCAG........................................................................................................................................................................................................................................................................................................................................ 17 2 7 0.29 2 0 0 0 0 0 2 0 0 0 0 0
............................................................................................................................................................................................................................................................CTTCAACTTTGGCATGAT............................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TGGCTGGAGTGGGAATA....................................................................... 17 2 9 0.22 2 0 0 1 0 0 1 0 0 0 0 0
........................................................................................................ATCAGTTGGCAAAAACGGAT................................................................................................................................................................................................................................. 20 3 9 0.22 2 0 0 0 0 0 0 0 2 0 0 0
...............................................................................................................................................................................................................................................................................GGGAATATAAAGGAAT.............................................................. 16 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGCATAGTAACAGAACTA................................................................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................AGCTTAAATTTTGGCATG................................................................................. 18 2 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................TGGCTGGAGTGGGAAT........................................................................ 16 2 20 0.15 3 0 0 1 0 0 1 0 0 0 1 0
..........................................................................................................................................................................................................................................................ATCTTCAAATTTGGCATG................................................................................. 18 3 20 0.15 3 2 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTACGCGTCGTGGGC................................................................................................................................................................ 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................ACTTAAAATTTGGCATGC................................................................................ 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................ATCTTCAACTTTGGCATGC................................................................................ 19 3 15 0.13 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TAACCTAAAATTTGGCATGC................................................................................ 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................ACTTAAAATTTGGCATGT................................................................................ 18 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................GTTCCCGCGCTCCTCGCC............................................................................................................................................................................................................................................................................. 18 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................ACCTTCAACTTTGGCATGC................................................................................ 19 3 18 0.11 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................TCGGTCCGGGTTCCA......................................................................................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................AGCTTGAAATTTGGCATGA................................................................................ 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AACTTCAACTCTGGCATGC................................................................................ 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GGGATCAATGGACAAAAT...................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................ATGGGAATATAAAGGAATC............................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................ATCTTCAAATTTGGCATGA................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................ATCTTAAAATTTGGCATGC................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGCATAGTAACGGTACCAC................................................................................................................................................ 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................ACCTACGCTTTGTTGGCAT.............................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AACTTCAATTTTGGCATGC................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:11822321-11822669 - dsi_22914 CGTCTGCCACATGATAGCATCGCCTACGGTATCCCTGCCAAGTAACAAAGGTAAGCCAGGCCCAAGG-GCGCGAGGAG---------CACATG--GTTA-----CG-------------AA--TC------------------------CGAATGAGC--CC-TAGTA----A-------C--------------------------CCGT-TTTTGCTTACCATC-----------------------------------G----------------------------------------------------AG-----------GT---------ATTCCTACATCCGTGAGCAAAGTG----------TG----TAACTAACCGGGTGAATGCGCAACACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CACC-------AAAGC-----------G----AAATG------------ATTTCCATC--A------------------------CATGATT----------------------------------------------------------------------------------T-------------------------------------------------TTG------------TATTGAATT--TGAAAC-CGTACTCACCCTTATATT-------A------CCTTAT-TTA-AATGACAGCATC-TTTGGACCGCCCTAAAACCGAAATGTCGCGGGCTGAGGCTGCGGCT
droSec2 scaffold_1:8645081-8645429 - CGTCTGCCACATGATAGCATCGCCTACGGTATCCCTGCCAAGTAACAAAGGTAAGCCAGGCCCAAAG-GCGCGAGGAG---------CACATG--GTTA-----CG-------------AA--TT------------------------CGAATGAGC--CC-TAGTC----A-------C--------------------------CCGT-TTTTGCTTACCATC-----------------------------------G----------------------------------------------------AG-----------GT---------ATTCCTACATCTGTGAGCAAAGTG----------TG----TAACTAACCGGGTGAATGCGCAACACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CACC-------AAAGC-----------G----AAATG------------ATTTCCATC--A------------------------CATGATT----------------------------------------------------------------------------------T-------------------------------------------------TTG------------TATTGAATT--TGAAAC-CGTACTCACCCTTATATT-------A------CCTTAT-TTA-AATGACAGCATC-TTTGGACCGCCCTAAAACCGAAATGTCGCGGGCTGAGGCTGCGGCT
dm3 chr2R:11152432-11152777 - CGTCTGCCACATGATAGCATCGCCTACGGTATCCCTGCCAAGTAATAAAGGTAAGCCAGGCCCAAGG-GCTCGAGGAG---------CACATG--GTTA-----CG-------------AA--TC------------------------CGAATGAGC--CC-TAGTC----A-------T--------------------------CCGT-TTTTGCTTACCATC-----------------------------------G----------------------------------------------------AG-----------GC---------ATTCCTACATCCGTGAGCAAAGTG----------TG----TAACTAACCGGGTGAATGCGCAACACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CACC-------AAAGC-----------G----AAATG------------ATTTCCATT--A------------------------CATGATT----------------------------------------------------------------------------------T-------------------------------------------------TTG------------TATTGAATT--TGAAAC-CGTACTCACCCTTATATT-------A------A----CTTTA-ACTGACAGCATC-TTTGGACCGCCCCAAAACCGAAATGTCGCGGGCTGAGGCTGCGGCC
droEre2 scaffold_4845:14717634-14717981 + CGTCTGCCACATGATAGCATCGCCCACGGTATCCCTGCCAAGCAACAAAGGTAAGCCAGGCCCGAGG-CCGCGAGGAG---------CACATG--GTTA-----CA-------------AA--TA------------------------CAAACGAGC--CC-CAGTC----A-------C--------------------------CCGT-TTTTGCTTACCATC-----------------------------------G----------------------------------------------------AG-----------GC---------GTTTCAACATACGTGAGCAAAGTG----------TG----TAACTAACCGGGTGAATGCGCAACACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CACC-------AAAGC-----------G----AAATG------------AATCCCATC--A------------------------CATGATT----------------------------------------------------------------------------------T-------------------------------------------------T-T------------TATTGAATT--TGCAAC-CCTACTCACGCCCATTTC-------A------CCCCAT-TTA-AATGACAGCTTC-CTTGGACCGCCCCAAAACAGAAATGTCGCGGGCTGAGGCTGCGGCT
droYak3 2R:11074100-11074456 - CGTCTGCCACATGATTGCATCGCCCACGGTATCCCTGCCAAGTAACAAAGGTAAGCCAGGCCCAAAAGCCGCGAGGAG---------CACAAG--GTTATCCAATG-------------AA--TC------------------------CGAATGAGC--CC-TAGTC----A-------C--------------------------CCGTTTTTTGCTTACCATC-----------------------------------G----------------------------------------------------AG-----------GC---------GTTTCAACAACCGTGAGCAAAGTG----------TG----TAACTAACCGGGTGAATGCGCAATACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CACC-------AAAGC-----------G----AAATG------------AATGCCATCACA------------------------CACGATT----------------------------------------------------------------------------------T-------------------------------------------------T-T------------TATTGAATT--TGCAAC-CCAACTCACGCTTGTTTT-------A------CCCCAT-TTA-AATGACAGCTTC-TTTGGACCGGCCCAAAACAGAAATGTCGCGGGCTGAAGCTGCGGCT
droEug1 scf7180000409672:10053-10380 - CGTCTGCCACATGATAGCATCGCCGACAGTCTCCCTGCCAAGTAACAAAGGTAAGCCAGGCCCAAGGGCCGCGAGGAG---------CACAGG--GTCG-----CG-------------AA--TC------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------ACG---------------------AACTCGTTCTTACATCCGTGAGCAAAGTG----------TATA--TAACTAACCGGGTGAAAGCGCAACACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------ACCC-------AAAAA----------AG----AAAAT------------ATTCTT--CACA------------------------TACGGTTTTTCTTTTT-----TATCTTTTTTGAA----------------------------------------------------------------------------------------------------ATCTTAC-----------------------------------TCAATGCTTGATTCT------T------CCCAAT-TGA-ACCGATAGCTTC-CTTGGACCGCCCCAAAACGGAAATGTCACGGGCCGAAGCTGCGGCT
droBia1 scf7180000302143:259880-260231 + CGTCTGCCACATGATAGCATCGCCCACGGTGTCCCTGCCGAGCAACAAAGGTAAGCCAGG-------------AGGAG---------CACAAG--GTCA-----CG-------------AA--TC--A-AGAATCACGAATTTCGCATCGAATTGAGT--T------------------------------------ACCCAGTGCCCCGT-T--------------------------------------------------------------------------------------------------------------------------------TGAATATCCGTAAGCAAAGTG----------TAAA--TAACTAACCGGTTGAATGCGCAACGCCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CTCC-------AAAAG-----------G----AAGAG------------ATTCCC--CACA------------------------TCTGGTT------TATTTCCC-----------------------------------------------------------------------------------------------------------------------TT---------CCCCATTGAATT--CGCCGC-CCCACTCATGTTTGCCTTTC-----A------CCCCGT-TGA-ACCGACAGCTTC-ACTGGACCGTCCCAAAACGGAAATGTCGCGGGCCGAGGCTGCGGCT
droTak1 scf7180000415878:857122-857431 + CGTCTGCCACATGATAGCATCGCCCACGGTCTCGCTGCCGAGCAACAAAGGTAAGCCG-------------CCAGGAG---------CACAT--------------------------------C------------------------GAACTGAGT--CCCAAGTT----A-------T--------------------------CCGT-G--------------------------------------------------------------------------------------------------------------------------------TCCAGAGCCGTAAGCACAGTG----------TAAA--TAACTAACCGGGTGAATGCGCAACGCCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CTCC-------GAAAG-----------G----AAAAG------------AATCCTCTC--C------------------------TC--C----------------------------------------------------------------------------------------------------------------------------------------T------------CTTTAAATT--CGTAGCCCCCACTCATGTTTGCTTTTTCCCTCC------CCCCGT-TGA-ACCGACAGCTTC-ACTGGACCGCCCCAAAACGGAAATGTCGCGGGCCGAGGCTGCGGCC
droEle1 scf7180000491214:4010092-4010433 - TGTCTGCCACATGATAGCATCGCCCACGGTCTCACTGCCGAGTCAGAAAGGTAAGCCAGGCCCAAAGGAAGCGAGGGT---------CATAAG--GTCA-----CG-------------AGGGTC--ATAAGGTCACGAAGGT------CA-----------------------------------------------TCTGAGGCC------------------------------------------------------------------------------------------------------CAGTGGG-----------TCATTCC-------CAAAAATCCGTGAGCAACGTG----------TTAA--TAACTAACCGGGTGAATGCGCAACACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CA-------------------------G----AAAAG------------ATTTCCCAC--A------------------------AA--ACA----------------------------------------------------------------------------------T-------------------------------------------------CTC------------CATTGAGTG--CACAAC-CCAACTCATGTCCCCTTT-------T------CCCCAT-TGC-ATCGACAGCTTC-GCTGGACCGTCCCAAAACGGAGATGTCCCGGGCCGAGGCAGCCGCC
droRho1 scf7180000776849:678770-679110 + CGTCTGCCACATGATAGCATCGCCCACGGTGTCGCTGCCGAGCAACAAAGGTAAGCCAGGCTCAAGG-CCGCGTCGAG---------CACGAG--GTCA-----CG-------------AA--TC------------------------GAATTGGGT--CC----------------------------------------------CTT-TTCCGTCGCCCAGC-----------------------------------G----------------------------------------------------AG-----------GC---------GTTCTGAAATCCGTGAGCAAAGTG----------TAAA--TAACTAACCGGGTGAATGCGCAACACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CTCA-------AAAAA-----------T----AAAAG------------ATTTCCCCC--A------------------------CA--ACG----------------------------------------------------------------------------------T-------------------------------------------------TTC------------CATTGAGTT--TGCAGC-CCTACTCATGTTTGCTTT-------T------CCCCAT-TGA-ACCGACAGCTTC-ACTGGACCGCCCCAAAACAGAAATGTCCCGGGCGGAGGCTGCCGCC
droFic1 scf7180000453342:769737-770050 + CGTCTGCCACATGATATCATCGCCCACGGTTTCGCTGCCGAGCAACAAAGGTAAGCCCGGGAAAAAG-TCGCGAGGAG---------CACGAG--GTCG-----CC-------------AG--CC-----------------------------------------------------------------------------------CGT-T-------------------------------------------------------------------------------------------------------------------------------TCTCGAGTCCGTGAGAAAAGTGTACTGTATGGTAGA--TAGCCAACCGGGCGAATGCGCAGCGCCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CTCC-------GAAAT-----------G----AAAAGAAAAG-------AATCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------AATTGAATT--GGCCAA-CCCACTCACGTCTGCTTTT------C------CCCCAT-TCG-ACCGACAGCTTC-ACTGGACCGACCCAAAACCGAGATGTCGCGGGCCGAGGCCGCTGCT
droKik1 scf7180000302476:160129-160454 - CGTCTGCCACATGATAGCCTCGCCCACGGTCTCTCTGCAGAGCAACAAAGGTAAGCCCC----A---------AGGAGCACAGGGAGCACGAG-----------CG-------------AA--TC------------------------CGA---------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------A-------CCCCAATCCGTGAGCCAAGTG----------TAAATAAAACTAACCGGGTGAA---------CCCGTATCATTGCCTTGCT--TCCGCCG-CTGTGCCGTTGTTGTCGCCTCCTCCTGCCA-------------------------G----CAAAG------------ATT-CCACC--A------------------------C-------------------------------------------------------------------------CCTCCAGCAGCATT-C-------------------------------------------------CTG------------CTTTGT-CC--CGCAAC-CCGACTCATCTTT------------TATAATTTTCCAT-TGACTTCGACAGCTTC-ACTGGACCGGCCCAAGACGGAGATGTCGCGGGCGGAGGCCGCCGCC
droAna3 scaffold_13266:7570201-7570538 - dan_1868 TGTCTGCCACATGATAGCATCGCCCACCGTCTCCCTGCAGAGCAACAAAGGTAAGGCCGCACC-----------GGAG---------TACAGGAGTTTT-----CT-------------CA--TC------------------------TGA----------------------------------------CCCGAACCCGAGGCC------------------------------------------------------------------------------------------------------CTGCGAGCATCTACG--------------------TGATCCGC-ATCAGAGTG----------TCAA--TAACTAACCGGGTGACTTTGCACTACCCGTATCATTGCCTTGCT--TCCGCTG-C---------------------------CTTC-------CAAAA----------AG----AAAGG----GAA-----ATCCTT--CAT----------------------------------------------------------------------------------------------------TTCCCGCTGGAATCC-------------------------------------------------CTT------------CA-----TTCGTTCAAC-CCTTTTCATGCTTGCCTTTC-----T------CTTAAT-TGCCCCCGACAGCTTC-TCTCGACCGCCCCAAGACGGAAATGTCACGGGCCGAGGCGGCCGCA
droBip1 scf7180000396759:1246379-1246724 + TGTCTGCCACATGATAGCATCGCCCACCGTCTCCCTGCAGAGCAACAAAGGTAAGGCCGCCCC-----------GGAG---------TACAGGAGCTTT-----CT-------------CA--TC------------------------CGACCAGAC--C---------------------------------CGACCCCGAGGCC------------------------------------------------------------------------------------------------------TTGCGAGCATCTCCG--------------------TGATCCGC-ATCAGAGTG----------TCAA--TAACTAACCGGGTGACTCTGCACTACCCGTATCATTGCCTTGCT--TCCGCTG-C---------------------------CTTC-------CAAAA-----------G----AAAAGAAGGGAA-----ATCCTT--CAT----------------------------------------------------------------------------------------------------TTCCCGCTGGAATCC-------------------------------------------------CCT------------CA-----TTCGTGCAAC-CCTTTTCATGCTTGCCTTTC-----T------CTTAAT-TGCCTCCGACAGCTTC-TCTGGACCGCCCCAAGACGGAAATGTCACGGGCCGAGGCGGCCGCA
dp5 3:543833-544189 - dps_914 CGTCTGCCACATGATTGCCTCGCCAACGGTCTCCCTGCAGAGTAACAAAGGTAAGCTTCGTGCAGAG--CCTGGGGCG---------CACAAG--GTCA-----CA-------------AT--TT--G-A----------TTTCCCA---------TTACCAC-------TTT-------TCCGTAACGTAGCCGTAACCAGAGTCC------------------------------------------------------------------------------------------------------AAGAGAA-----------ACCAATA-------TGTATATCCGTGAGAAATGTG----------TGAC--AAACTAACCGGGTGATTGCTCACTA-CCGTTTCATTGCCTTGCT--TTAGCCG-C---------------------------CTTC-------AAAGC----------AG----CA-------------------------------------------------------------------------------------------------------------------CCTGTCA----------------------------------------GTCGAGCAGGTCTGCCGTTCCAAACTTTTACTATAAAATG-------------------------------T--------------A------TCAT-TTTCT-TCTGATAGCTTC-ATTGGATCGCCCCAAGACGGAAATGTCGCGCGCAGAAGCCGCGGCA
droPer2 scaffold_2:708853-709210 - CGTCTGCCACATGATTGCCTCGCCAACGGTCTCCCTGCAGAGTAACAAAGGTAAGCTTCGTGCAGAG--CCTGGGGCG---------CACAAG--GTCA-----CA-------------AT--TT--G-A----------TTTCCCA---------TTACCAC-------TTT-------TCCGTAACGTAGCCGTAACCAGAGTCC------------------------------------------------------------------------------------------------------AAGAGAA-----------ACCAATA-------TGTATATCCGTGAGAAATGTG----------TGAC--AAACTAACCGGGTGATTGCTCACTA-CCGTTTCATTGCCTTGCT--TTAGCCG-C---------------------------CTTC-------AAAGC----------AG----CA-------------------------------------------------------------------------------------------------------------------CCTGTCA----------------------------------------GTCGAGCAGGTCTGCCGTTCCAAACTTTTACTATAAAATG-------------------------------T--------------A------TCAT-TTTCT-TCTGATAGCTTCATTTGGATCGCCCCAAGACGGAAATGTCGCGCGCAGAAGCCGCGGCA
droWil2 scf2_1100000004510:1314703-1315093 - CGTTTGCCATATGATTGCCTCGCCAACGGTCTCACTGCAAAGTAATAAAGGTAAGCTGGGCGT-----------G---CATCAGAAAAACGAA-----------AGACGATACGACATAGCGACC----AATTCCACAAAATC------CAACTAGG---CC-CAGTTAATCC-------T-------------CCAGATGCAGTC---CT---------------------------------------------------------------------------------------------------TTCCAGCTTCCATATAAGC---------CTT----------------------------------------------------CTGCCTACTGCCTGCCTGCCTGCC-TGCT--TGTGCTG-C---------------------------CCTT-------ACAGA-----------A----AAAAA------------TATCGC--TGCGGCTGCTTATTCTATTTACTTTCTATATGATATATAATATA-----TATATTTCTTGA--------------------------------------------------------------TCCTCCCATC-AA----T----------AGATGATCTAAGATTTACT--TAAAATA-----------------------------TG-----------------------TCGAT-TTT-TCTCATAGCTTC-TTTGGATCGTCCCAAAACGGAAATGTCACGTGCAGAAGCTGCCGCA
droVir3 scaffold_10324:898137-898505 + dvi_821 CGTCTGCCATTTGATTGCCTCGCCGACCGTCTCGCTGCAGAGCAACAAAGGTAAGTTGGCGTT-----------G---CTC-----------------C-----CA-------------TC--CC--C-A----------TCCCCAA---------CCACCAC-------CTA-------TC------------------------------------------------CAAG----CGTATCTGATTGGCCGTACCATCGAATTAAAAGCGGAATCTGAATCTGAA---------------------------------------------A-------CTCCAAAT----TGTAATCTG----------TGTA--TAGCTAACCGGGCGTATGCGTAATATTCAT----TTGCCTTGTG--CTTGCCG-C---------------------------CAAA-------CAAACCAAACC-----A----AA-----CC-AAACAAAA-CGCC--TGCGCCTGCC------------------------T------TCATTCTTTAT---------------------------------------------------------------T-CTTTTGT-CTTCCGTC-AA---------------------------------------------------------------------------TTAATTCT------TATAAT--TCGA---AT-ATTCACAGCCTC-CTTGGATCGGCCCAAGACGGAAATGTCGCGCGCCGAGGCCGCTGCG
droMoj3 scaffold_6496:2769076-2769523 + CGTTTGCCATTTGATTGCCTCACCGACCGTCTCGCTGCAGAGCAACAAAGGTAAGTTGGCATT-----------G---CTC-----------------------CG-------------AT--CTCCG-A----------TCTCCGA---------TCACCA---AAC----T-------C--------------------------CGAC-TTCCGATCTCCATC----CAAAATCCCCTATCCGATTGGCC-------CACACTAAAAG--AAAATTGAAAATGAAAAACAAAAGCACCTCGAACCTA-----------------------------------CAAAATTGTGTAATATG---------TTTAC--TTGCTAACCGGGCGTATGCGTAATATTCAT----TTGCCTTGTG--CTTGCCAGC---------------------------CAAAAACCCCACAAAAAATATCAAAATAAATAAAAAGAAAAG-------AAATCCCAC--G------------------------CA--ATA---------------------------CCTAAGCCTGCGACTGCGCCTGCGCCTGCACCTGCCTCAGCTTCCAGTTGGAAT-----------------------------------------------CTTTTCT------------CATTGAATC------------------------------------------TTTGT-ATG-TTTCACAGCTTC-CTTGGATCGGCCCAAGACGGAGATGTCACGCGCAGAGGCAGCTGCG
droGri2 scaffold_15245:8585976-8586377 + CGTCTGCCATTTGATTGGATCACCGACCGTCTCCCTGCAGAGCAATAAAGGTAAGTTGGTGTT-----------G---CTCCAAC--CTTTTG--GCAACCCTCCA-------------CT--CC------------------------TGCAAGTGC--CC-CTGCC----ATGTAACAC--------------------------CTATCCCTTCCCTACCACCAATCC-AG----CGATTCCGATAGA--GAACCATCA--TAGAAAAC--------AATCTGAA---------------------------------------------A-------TT-------ATAAATAATCTG-----TA---TATATAGAGCTAACTGGGCGTATGCGTAGTAT-----TCATTGCCTTGTGCTTGTGCCG-C---------------------------CAAA---------AAT----------TG----AATAAAACCAAA-----A-CGCC--TGCGCCTGCC------------------------T------TAGGTCCT-----TTGCTGAC-------------------------------TTCCCA-------------------------------GCCTAACTAATCGA---GACCTTCCCCGCCGA-----------------------------------------------------------------------------ACT-TTTCACAGCATC-CCTGGATCGTCCCAAGACGGAAATGTCGCGCGCCGAGGCCGCTGCC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGTCTGCCACATGATAGCATCGCCTACGGTATCCCTGCCAAGTAACAAAGGTAAGCCAGGCCCAAGG-GCGCGAGGAG---------CACATG--GTTA-----CG-------------AA--TC------------------------CGAATGAGC--CC-TAGTA----A-------C--------------------------CCGT-TTTTGCTTACCATC-----------------------------------G----------------------------------------------------AG-----------GT---------ATTCCTACATCCGTGAGCAAAGTG----------TG----TAACTAACCGGGTGAATGCGCAACACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CACC-------AAAGC-----------G----AAATG------------ATTTCCATC--A------------------------CATGATT----------------------------------------------------------------------------------T-------------------------------------------------TTG------------TATTGAATT--TGAAAC-CGTACTCACCCTTATATT-------A------CCTTAT-TTA-AATGACAGCATC-TTTGGACCGCCCTAAAACCGAAATGTCGCGGGCTGAGGCTGCGGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGCGGGCTGAGGCTGCGGC.2312.00220000000000000000
droSec2
CGTCTGCCACATGATAGCATCGCCTACGGTATCCCTGCCAAGTAACAAAGGTAAGCCAGGCCCAAAG-GCGCGAGGAG---------CACATG--GTTA-----CG-------------AA--TT------------------------CGAATGAGC--CC-TAGTC----A-------C--------------------------CCGT-TTTTGCTTACCATC-----------------------------------G----------------------------------------------------AG-----------GT---------ATTCCTACATCTGTGAGCAAAGTG----------TG----TAACTAACCGGGTGAATGCGCAACACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CACC-------AAAGC-----------G----AAATG------------ATTTCCATC--A------------------------CATGATT----------------------------------------------------------------------------------T-------------------------------------------------TTG------------TATTGAATT--TGAAAC-CGTACTCACCCTTATATT-------A------CCTTAT-TTA-AATGACAGCATC-TTTGGACCGCCCTAAAACCGAAATGTCGCGGGCTGAGGCTGCGGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAAATGTCGCGGGCTGAGGCTGC....2711.0010100
dm3
CGTCTGCCACATGATAGCATCGCCTACGGTATCCCTGCCAAGTAATAAAGGTAAGCCAGGCCCAAGG-GCTCGAGGAG---------CACATG--GTTA-----CG-------------AA--TC------------------------CGAATGAGC--CC-TAGTC----A-------T--------------------------CCGT-TTTTGCTTACCATC-----------------------------------G----------------------------------------------------AG-----------GC---------ATTCCTACATCCGTGAGCAAAGTG----------TG----TAACTAACCGGGTGAATGCGCAACACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CACC-------AAAGC-----------G----AAATG------------ATTTCCATT--A------------------------CATGATT----------------------------------------------------------------------------------T-------------------------------------------------TTG------------TATTGAATT--TGAAAC-CGTACTCACCCTTATATT-------A------A----CTTTA-ACTGACAGCATC-TTTGGACCGCCCCAAAACCGAAATGTCGCGGGCTGAGGCTGCGGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................CCCTGCCAAGTAATAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TCCCTGCCAAGTAATAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GCATCGCCTACGGTATCCCTGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAAATGTCGCGGGCTGAGGC.......2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACCGAAATGTCGCGGGCTGAGGC.......2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.......................CTACGGTATCCCTGCCAAGTAATAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAATGTCGCGGGCTGAGG........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGTCGCGGGCTGAGGCTGC....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACAGCATC-TTTGGACCGC....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------------------------------------------------------T-------------------------------------------------TTG------------TATTGAATT--TGAAAC-C.....................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTCGCGGGCTGAGGCTG.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGCGGGCTGAGGCTGCGGCC2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................TTACCATC-----------------------------------G----------------------------------------------------AG-----------GC---------ATTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GCCCAAGG-GCTCGAGGAG---------CAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................ACATCCGTGAGCAAAGTG----------TG----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTA-ACTGACAGCATC-TTTGG.........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAAATGTCGCGGGCTGAGGCTGC....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAATGTCGCGGGCTGAGGCTGCGGCC2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GATAGCATCGCCTACGGTATCCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCTTATATT-------A------A----CTTTA-ACTGAC.....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAAGCCAGGCCCAAGG-GCTCGAGGAG---------CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------ATTTCCATT--A------------------------CATGATT----------------------------------------------------------------------------------T-------------------------------------------------TTG------------TATTGA..................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGTCTGCCACATGATAGCATCGCCCACGGTATCCCTGCCAAGCAACAAAGGTAAGCCAGGCCCGAGG-CCGCGAGGAG---------CACATG--GTTA-----CA-------------AA--TA------------------------CAAACGAGC--CC-CAGTC----A-------C--------------------------CCGT-TTTTGCTTACCATC-----------------------------------G----------------------------------------------------AG-----------GC---------GTTTCAACATACGTGAGCAAAGTG----------TG----TAACTAACCGGGTGAATGCGCAACACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CACC-------AAAGC-----------G----AAATG------------AATCCCATC--A------------------------CATGATT----------------------------------------------------------------------------------T-------------------------------------------------T-T------------TATTGAATT--TGCAAC-CCTACTCACGCCCATTTC-------A------CCCCAT-TTA-AATGACAGCTTC-CTTGGACCGCCCCAAAACAGAAATGTCGCGGGCTGAGGCTGCGGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............AGCATCGCCCACGGTATCCCTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
droYak3
CGTCTGCCACATGATTGCATCGCCCACGGTATCCCTGCCAAGTAACAAAGGTAAGCCAGGCCCAAAAGCCGCGAGGAG---------CACAAG--GTTATCCAATG-------------AA--TC------------------------CGAATGAGC--CC-TAGTC----A-------C--------------------------CCGTTTTTTGCTTACCATC-----------------------------------G----------------------------------------------------AG-----------GC---------GTTTCAACAACCGTGAGCAAAGTG----------TG----TAACTAACCGGGTGAATGCGCAATACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CACC-------AAAGC-----------G----AAATG------------AATGCCATCACA------------------------CACGATT----------------------------------------------------------------------------------T-------------------------------------------------T-T------------TATTGAATT--TGCAAC-CCAACTCACGCTTGTTTT-------A------CCCCAT-TTA-AATGACAGCTTC-TTTGGACCGGCCCAAAACAGAAATGTCGCGGGCTGAAGCTGCGGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................GAGCAAAGTG----------TG----TAACTAACCGGGTGAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................AGTG----------TG----TAACTAACCGGGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
droEug1
CGTCTGCCACATGATAGCATCGCCGACAGTCTCCCTGCCAAGTAACAAAGGTAAGCCAGGCCCAAGGGCCGCGAGGAG---------CACAGG--GTCG-----CG-------------AA--TC------------------------C---------------------------------------------------------------------------------------------------------------------------------------------------------------ACG---------------------AACTCGTTCTTACATCCGTGAGCAAAGTG----------TATA--TAACTAACCGGGTGAAAGCGCAACACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------ACCC-------AAAAA----------AG----AAAAT------------ATTCTT--CACA------------------------TACGGTTTTTCTTTTT-----TATCTTTTTTGAA----------------------------------------------------------------------------------------------------ATCTTAC-----------------------------------TCAATGCTTGATTCT------T------CCCAAT-TGA-ACCGATAGCTTC-CTTGGACCGCCCCAAAACGGAAATGTCACGGGCCGAAGCTGCGGCTSizeHit CountTotal NormTotal
No Reads
droBia1
CGTCTGCCACATGATAGCATCGCCCACGGTGTCCCTGCCGAGCAACAAAGGTAAGCCAGG-------------AGGAG---------CACAAG--GTCA-----CG-------------AA--TC--A-AGAATCACGAATTTCGCATCGAATTGAGT--T------------------------------------ACCCAGTGCCCCGT-T--------------------------------------------------------------------------------------------------------------------------------TGAATATCCGTAAGCAAAGTG----------TAAA--TAACTAACCGGTTGAATGCGCAACGCCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CTCC-------AAAAG-----------G----AAGAG------------ATTCCC--CACA------------------------TCTGGTT------TATTTCCC-----------------------------------------------------------------------------------------------------------------------TT---------CCCCATTGAATT--CGCCGC-CCCACTCATGTTTGCCTTTC-----A------CCCCGT-TGA-ACCGACAGCTTC-ACTGGACCGTCCCAAAACGGAAATGTCGCGGGCCGAGGCTGCGGCTSizeHit CountTotal NormTotal
No Reads
droTak1
CGTCTGCCACATGATAGCATCGCCCACGGTCTCGCTGCCGAGCAACAAAGGTAAGCCG-------------CCAGGAG---------CACAT--------------------------------C------------------------GAACTGAGT--CCCAAGTT----A-------T--------------------------CCGT-G--------------------------------------------------------------------------------------------------------------------------------TCCAGAGCCGTAAGCACAGTG----------TAAA--TAACTAACCGGGTGAATGCGCAACGCCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CTCC-------GAAAG-----------G----AAAAG------------AATCCTCTC--C------------------------TC--C----------------------------------------------------------------------------------------------------------------------------------------T------------CTTTAAATT--CGTAGCCCCCACTCATGTTTGCTTTTTCCCTCC------CCCCGT-TGA-ACCGACAGCTTC-ACTGGACCGCCCCAAAACGGAAATGTCGCGGGCCGAGGCTGCGGCCSizeHit CountTotal NormTotal
No Reads
droEle1
TGTCTGCCACATGATAGCATCGCCCACGGTCTCACTGCCGAGTCAGAAAGGTAAGCCAGGCCCAAAGGAAGCGAGGGT---------CATAAG--GTCA-----CG-------------AGGGTC--ATAAGGTCACGAAGGT------CA-----------------------------------------------TCTGAGGCC------------------------------------------------------------------------------------------------------CAGTGGG-----------TCATTCC-------CAAAAATCCGTGAGCAACGTG----------TTAA--TAACTAACCGGGTGAATGCGCAACACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CA-------------------------G----AAAAG------------ATTTCCCAC--A------------------------AA--ACA----------------------------------------------------------------------------------T-------------------------------------------------CTC------------CATTGAGTG--CACAAC-CCAACTCATGTCCCCTTT-------T------CCCCAT-TGC-ATCGACAGCTTC-GCTGGACCGTCCCAAAACGGAGATGTCCCGGGCCGAGGCAGCCGCCSizeHit CountTotal NormTotal
No Reads
droRho1
CGTCTGCCACATGATAGCATCGCCCACGGTGTCGCTGCCGAGCAACAAAGGTAAGCCAGGCTCAAGG-CCGCGTCGAG---------CACGAG--GTCA-----CG-------------AA--TC------------------------GAATTGGGT--CC----------------------------------------------CTT-TTCCGTCGCCCAGC-----------------------------------G----------------------------------------------------AG-----------GC---------GTTCTGAAATCCGTGAGCAAAGTG----------TAAA--TAACTAACCGGGTGAATGCGCAACACCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CTCA-------AAAAA-----------T----AAAAG------------ATTTCCCCC--A------------------------CA--ACG----------------------------------------------------------------------------------T-------------------------------------------------TTC------------CATTGAGTT--TGCAGC-CCTACTCATGTTTGCTTT-------T------CCCCAT-TGA-ACCGACAGCTTC-ACTGGACCGCCCCAAAACAGAAATGTCCCGGGCGGAGGCTGCCGCCSizeHit CountTotal NormTotal
No Reads
droFic1
CGTCTGCCACATGATATCATCGCCCACGGTTTCGCTGCCGAGCAACAAAGGTAAGCCCGGGAAAAAG-TCGCGAGGAG---------CACGAG--GTCG-----CC-------------AG--CC-----------------------------------------------------------------------------------CGT-T-------------------------------------------------------------------------------------------------------------------------------TCTCGAGTCCGTGAGAAAAGTGTACTGTATGGTAGA--TAGCCAACCGGGCGAATGCGCAGCGCCCGTATCATTGCCTTGCT--TCCGCCG-C---------------------------CTCC-------GAAAT-----------G----AAAAGAAAAG-------AATCCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------------AATTGAATT--GGCCAA-CCCACTCACGTCTGCTTTT------C------CCCCAT-TCG-ACCGACAGCTTC-ACTGGACCGACCCAAAACCGAGATGTCGCGGGCCGAGGCCGCTGCTSizeHit CountTotal NormTotal
No Reads
droKik1
CGTCTGCCACATGATAGCCTCGCCCACGGTCTCTCTGCAGAGCAACAAAGGTAAGCCCC----A---------AGGAGCACAGGGAGCACGAG-----------CG-------------AA--TC------------------------CGA---------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------A-------CCCCAATCCGTGAGCCAAGTG----------TAAATAAAACTAACCGGGTGAA---------CCCGTATCATTGCCTTGCT--TCCGCCG-CTGTGCCGTTGTTGTCGCCTCCTCCTGCCA-------------------------G----CAAAG------------ATT-CCACC--A------------------------C-------------------------------------------------------------------------CCTCCAGCAGCATT-C-------------------------------------------------CTG------------CTTTGT-CC--CGCAAC-CCGACTCATCTTT------------TATAATTTTCCAT-TGACTTCGACAGCTTC-ACTGGACCGGCCCAAGACGGAGATGTCGCGGGCGGAGGCCGCCGCCSizeHit CountTotal NormTotal
No Reads
droAna3
TGTCTGCCACATGATAGCATCGCCCACCGTCTCCCTGCAGAGCAACAAAGGTAAGGCCGCACC-----------GGAG---------TACAGGAGTTTT-----CT-------------CA--TC------------------------TGA----------------------------------------CCCGAACCCGAGGCC------------------------------------------------------------------------------------------------------CTGCGAGCATCTACG--------------------TGATCCGC-ATCAGAGTG----------TCAA--TAACTAACCGGGTGACTTTGCACTACCCGTATCATTGCCTTGCT--TCCGCTG-C---------------------------CTTC-------CAAAA----------AG----AAAGG----GAA-----ATCCTT--CAT----------------------------------------------------------------------------------------------------TTCCCGCTGGAATCC-------------------------------------------------CTT------------CA-----TTCGTTCAAC-CCTTTTCATGCTTGCCTTTC-----T------CTTAAT-TGCCCCCGACAGCTTC-TCTCGACCGCCCCAAGACGGAAATGTCACGGGCCGAGGCGGCCGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................TCGCCCACCGTCTCCCTGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
......................................AGAGCAACAAAGGTAAGGCCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................................GAGCAACAAAGGTAAGGCCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
droBip1
TGTCTGCCACATGATAGCATCGCCCACCGTCTCCCTGCAGAGCAACAAAGGTAAGGCCGCCCC-----------GGAG---------TACAGGAGCTTT-----CT-------------CA--TC------------------------CGACCAGAC--C---------------------------------CGACCCCGAGGCC------------------------------------------------------------------------------------------------------TTGCGAGCATCTCCG--------------------TGATCCGC-ATCAGAGTG----------TCAA--TAACTAACCGGGTGACTCTGCACTACCCGTATCATTGCCTTGCT--TCCGCTG-C---------------------------CTTC-------CAAAA-----------G----AAAAGAAGGGAA-----ATCCTT--CAT----------------------------------------------------------------------------------------------------TTCCCGCTGGAATCC-------------------------------------------------CCT------------CA-----TTCGTGCAAC-CCTTTTCATGCTTGCCTTTC-----T------CTTAAT-TGCCTCCGACAGCTTC-TCTGGACCGCCCCAAGACGGAAATGTCACGGGCCGAGGCGGCCGCASizeHit CountTotal NormTotal
No Reads
dp5
CGTCTGCCACATGATTGCCTCGCCAACGGTCTCCCTGCAGAGTAACAAAGGTAAGCTTCGTGCAGAG--CCTGGGGCG---------CACAAG--GTCA-----CA-------------AT--TT--G-A----------TTTCCCA---------TTACCAC-------TTT-------TCCGTAACGTAGCCGTAACCAGAGTCC------------------------------------------------------------------------------------------------------AAGAGAA-----------ACCAATA-------TGTATATCCGTGAGAAATGTG----------TGAC--AAACTAACCGGGTGATTGCTCACTA-CCGTTTCATTGCCTTGCT--TTAGCCG-C---------------------------CTTC-------AAAGC----------AG----CA-------------------------------------------------------------------------------------------------------------------CCTGTCA----------------------------------------GTCGAGCAGGTCTGCCGTTCCAAACTTTTACTATAAAATG-------------------------------T--------------A------TCAT-TTTCT-TCTGATAGCTTC-ATTGGATCGCCCCAAGACGGAAATGTCGCGCGCAGAAGCCGCGGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCGCCCCAAGACGGAAA.......................2112.0020200000000
.......................................................................................................................................................................................................................................................................................................................................................TATATCCGTGAGAAATGTG----------TG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
............................................................................................................................................................................................................................................................................................................................................TA-------TGTATATCCGTGAGAAATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................TAACGTAGCCGTAACCAGAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
CGTCTGCCACATGATTGCCTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGGAAATGTCGCGCGC.............1911.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................TGTG----------TGAC--AAACTAACCGGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
........................................................TTCGTGCAGAG--CCTGGGGCG---------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
.....................................................................................................................................................................................CCGTAACGTAGCCGTAACCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATCGCCCCAAGACGGAA........................2111.0010100000000
.......................................................CTTCGTGCAGAG--CCTGGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................TGCAGAG--CCTGGGGCG---------CACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................A---------TTACCAC-------TTT-------TCCGTAACGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................CCAACGGTCTCCCTGCAGAGTAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
........ACATGATTGCCTCGCCAACGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATCGCCCCAAGACGGA.........................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................ATCCGTGAGAAATGTG----------TGAC--AAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................TGTG----------TGAC--AAACTAACCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................AATGTG----------TGAC--AAACTAACCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................AAGCTTCGTGCAGAG--CCTGGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..TCTGCCACATGATTGCCTCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
CGTCTGCCACATGATTGCCTCGCCAACGGTCTCCCTGCAGAGTAACAAAGGTAAGCTTCGTGCAGAG--CCTGGGGCG---------CACAAG--GTCA-----CA-------------AT--TT--G-A----------TTTCCCA---------TTACCAC-------TTT-------TCCGTAACGTAGCCGTAACCAGAGTCC------------------------------------------------------------------------------------------------------AAGAGAA-----------ACCAATA-------TGTATATCCGTGAGAAATGTG----------TGAC--AAACTAACCGGGTGATTGCTCACTA-CCGTTTCATTGCCTTGCT--TTAGCCG-C---------------------------CTTC-------AAAGC----------AG----CA-------------------------------------------------------------------------------------------------------------------CCTGTCA----------------------------------------GTCGAGCAGGTCTGCCGTTCCAAACTTTTACTATAAAATG-------------------------------T--------------A------TCAT-TTTCT-TCTGATAGCTTCATTTGGATCGCCCCAAGACGGAAATGTCGCGCGCAGAAGCCGCGGCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGACGGAAATGTCGCGC...............2111.001010000
........................AACGGTCTCCCTGCAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droWil2
CGTTTGCCATATGATTGCCTCGCCAACGGTCTCACTGCAAAGTAATAAAGGTAAGCTGGGCGT-----------G---CATCAGAAAAACGAA-----------AGACGATACGACATAGCGACC----AATTCCACAAAATC------CAACTAGG---CC-CAGTTAATCC-------T-------------CCAGATGCAGTC---CT---------------------------------------------------------------------------------------------------TTCCAGCTTCCATATAAGC---------CTT----------------------------------------------------CTGCCTACTGCCTGCCTGCCTGCC-TGCT--TGTGCTG-C---------------------------CCTT-------ACAGA-----------A----AAAAA------------TATCGC--TGCGGCTGCTTATTCTATTTACTTTCTATATGATATATAATATA-----TATATTTCTTGA--------------------------------------------------------------TCCTCCCATC-AA----T----------AGATGATCTAAGATTTACT--TAAAATA-----------------------------TG-----------------------TCGAT-TTT-TCTCATAGCTTC-TTTGGATCGTCCCAAAACGGAAATGTCACGTGCAGAAGCTGCCGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................CGCCAACGGTCTCACTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGGAAATGTCACGTGCAGA..........2311.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAAACGGAAATGTCACGTGCAGA..........2611.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATCGTCCCAAAACGGAAATGTCACGT...............2911.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATCGTCCCAAAACGGA.........................2011.00100100
droVir3
CGTCTGCCATTTGATTGCCTCGCCGACCGTCTCGCTGCAGAGCAACAAAGGTAAGTTGGCGTT-----------G---CTC-----------------C-----CA-------------TC--CC--C-A----------TCCCCAA---------CCACCAC-------CTA-------TC------------------------------------------------CAAG----CGTATCTGATTGGCCGTACCATCGAATTAAAAGCGGAATCTGAATCTGAA---------------------------------------------A-------CTCCAAAT----TGTAATCTG----------TGTA--TAGCTAACCGGGCGTATGCGTAATATTCAT----TTGCCTTGTG--CTTGCCG-C---------------------------CAAA-------CAAACCAAACC-----A----AA-----CC-AAACAAAA-CGCC--TGCGCCTGCC------------------------T------TCATTCTTTAT---------------------------------------------------------------T-CTTTTGT-CTTCCGTC-AA---------------------------------------------------------------------------TTAATTCT------TATAAT--TCGA---AT-ATTCACAGCCTC-CTTGGATCGGCCCAAGACGGAAATGTCGCGCGCCGAGGCCGCTGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGCGCGCCGAGGCCGCTGCG2412.002000000000000000000000000000000000000000000000000000000000000002
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCAAGACGGAAATGTCGCGC...............2311.001000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGAAATGTCGCGCGCCGAGGCC......2511.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGAAATGTCGCGCGCCGAT.........2011.001000000000000000010000000000000000000000000000000000000000000000
droMoj3
CGTTTGCCATTTGATTGCCTCACCGACCGTCTCGCTGCAGAGCAACAAAGGTAAGTTGGCATT-----------G---CTC-----------------------CG-------------AT--CTCCG-A----------TCTCCGA---------TCACCA---AAC----T-------C--------------------------CGAC-TTCCGATCTCCATC----CAAAATCCCCTATCCGATTGGCC-------CACACTAAAAG--AAAATTGAAAATGAAAAACAAAAGCACCTCGAACCTA-----------------------------------CAAAATTGTGTAATATG---------TTTAC--TTGCTAACCGGGCGTATGCGTAATATTCAT----TTGCCTTGTG--CTTGCCAGC---------------------------CAAAAACCCCACAAAAAATATCAAAATAAATAAAAAGAAAAG-------AAATCCCAC--G------------------------CA--ATA---------------------------CCTAAGCCTGCGACTGCGCCTGCGCCTGCACCTGCCTCAGCTTCCAGTTGGAAT-----------------------------------------------CTTTTCT------------CATTGAATC------------------------------------------TTTGT-ATG-TTTCACAGCTTC-CTTGGATCGGCCCAAGACGGAGATGTCACGCGCAGAGGCAGCTGCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................GCCTCACCGACCGTCTCGCTGCAGAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
droGri2
CGTCTGCCATTTGATTGGATCACCGACCGTCTCCCTGCAGAGCAATAAAGGTAAGTTGGTGTT-----------G---CTCCAAC--CTTTTG--GCAACCCTCCA-------------CT--CC------------------------TGCAAGTGC--CC-CTGCC----ATGTAACAC--------------------------CTATCCCTTCCCTACCACCAATCC-AG----CGATTCCGATAGA--GAACCATCA--TAGAAAAC--------AATCTGAA---------------------------------------------A-------TT-------ATAAATAATCTG-----TA---TATATAGAGCTAACTGGGCGTATGCGTAGTAT-----TCATTGCCTTGTGCTTGTGCCG-C---------------------------CAAA---------AAT----------TG----AATAAAACCAAA-----A-CGCC--TGCGCCTGCC------------------------T------TAGGTCCT-----TTGCTGAC-------------------------------TTCCCA-------------------------------GCCTAACTAATCGA---GACCTTCCCCGCCGA-----------------------------------------------------------------------------ACT-TTTCACAGCATC-CCTGGATCGTCCCAAGACGGAAATGTCGCGCGCCGAGGCCGCTGCCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:58 PM