ID:

dsi_22905

Coordinate:

3l:7992739-7992819 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7992611_7992746_+]; three_prime_UTR [3l_7992747_7993497_+]; exon [3l_7992611_7993497_+]

No Repeatable elements found

Sense Strand Reads

##################################################################################################################################################################################### AAAGAGGCACGACCTGCGGCTGGAGGACCACTATGCTATGGATATCAAAGGTGCTTAACTGTTCGCTTCTCGCACACACTTCACACTTACACACATCCCAACCAAACCCACAATCGAAACAAATTCTCTAGTTGATTCACCTCAAACTCTAGGCCTGAACAGTGGCGTGAGCATTGGCGGA ************************************************((((.................))))........................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553485 Chicharo_3 day-old ovaries	M025 embryo	SRR902008 ovaries	M023 head	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
...........ACCTGCGGCTGGATCACC........................................................................................................................................................	18	2	9	4.44	40	28	0	0	0	7	4	1	0
...........ACCTGCGGCTGGATCACCCC......................................................................................................................................................	20	3	5	1.80	9	9	0	0	0	0	0	0	0
...............................................................................................................................................AAACTCTAGGCCTGAACAGTGGC...............	23	0	1	1.00	1	0	0	1	0	0	0	0	0
...........................................................................................................................................CCTCAAACTCTAGGCCTGAACAGTGGC...............	27	0	1	1.00	1	0	1	0	0	0	0	0	0
.............................................................................................................................................TCAACCTCTAGGCCTGAACAGTGGCGTG............	28	1	1	1.00	1	0	0	0	1	0	0	0	0
.............................................................................................................................................TCAAACTCTAGGCCTGAACAGTGGCGTG............	28	0	1	1.00	1	0	0	0	1	0	0	0	0
...........................................................................................................................................CCTCAAACTCTAGGCCTGAACAGT..................	24	0	1	1.00	1	0	1	0	0	0	0	0	0
..........................................................................................................................................ACCTCAAACTCTAGGCCTGAACAGT..................	25	0	1	1.00	1	0	1	0	0	0	0	0	0
......................................................TTAACTGTTCGCTTCTCGCAC..........................................................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0
..................................GCTATTGATATAAAAGGTG................................................................................................................................	19	2	3	0.67	2	0	0	0	0	2	0	0	0
.............CTGCGGCTGGAGGAC.........................................................................................................................................................	15	0	2	0.50	1	0	1	0	0	0	0	0	0
............CCTGCGGCTGGATCACC........................................................................................................................................................	17	2	20	0.15	3	0	2	0	0	0	0	0	1
...........ACCTGCGGCTGGATCACCC.......................................................................................................................................................	19	3	20	0.15	3	3	0	0	0	0	0	0	0
.........................................................................................................................AATTCTCTGGTTGACTCA..........................................	18	2	7	0.14	1	1	0	0	0	0	0	0	0

Anti-sense strand reads

TTTCTCCGTGCTGGACGCCGACCTCCTGGTGATACGATACCTATAGTTTCCACGAATTGACAAGCGAAGAGCGTGTGTGAAGTGTGAATGTGTGTAGGGTTGGTTTGGGTGTTAGCTTTGTTTAAGAGATCAACTAAGTGGAGTTTGAGATCCGGACTTGTCACCGCACTCGTAACCGCCT ************************************************((((.................))))........................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	O001 Testis	M053 female body	M024 male body
..............................................................................GAGGTGTGAAGGTATGTAGGGT.................................................................................	22	3	1	2.00	2	2	0	0	0	0	0	0
.........................ATGGTGATACGATACC............................................................................................................................................	16	1	1	2.00	2	0	2	0	0	0	0	0
.........................ATGGTGATACGATACCT...........................................................................................................................................	17	1	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................GTAGGGTTGGTCTGGGT.......................................................................	17	1	1	1.00	1	0	0	1	0	0	0	0
..................................................................................TGTGAATGTGTGTAGGGTTGGT.............................................................................	22	0	1	1.00	1	0	0	0	0	1	0	0
..............................................................................GAGGTGTGAATATATGTAGGGT.................................................................................	22	3	2	0.50	1	1	0	0	0	0	0	0
.............................................................................................GTAGGGTTGGTCTGGGTTT.....................................................................	19	2	9	0.11	1	0	0	1	0	0	0	0
....................................................................GAGCGTGTGTACAGTCTGA..............................................................................................	19	3	20	0.10	2	0	0	0	2	0	0	0
........................................................................................................................................................CGGACTTGTCCCCGGACTTG.........	20	3	12	0.08	1	0	0	0	0	0	1	0
..............................................................................................TAGGGTTGTTTTGGTGGTTA...................................................................	20	3	20	0.05	1	0	0	0	0	0	0	1
...........................................................................................CTGTAGGGTTAGTTCGGG........................................................................	18	3	20	0.05	1	0	0	1	0	0	0	0
...........................................................................................................................AAGGGATCAACCAATTGGA.......................................	19	3	20	0.05	1	0	0	0	1	0	0	0
........................CCTGGTGATATGATAGCT...........................................................................................................................................	18	2	20	0.05	1	0	0	1	0	0	0	0

Generated: 04/24/2015 at 10:35 AM