dsi_2289

TATATGTTTCAGCTTCCGGAAGCAAGCCTATTTTCTCGCTTTGTTTTAAGGTATTTAAATTGTTGAGTGAATTGAATTTCTTGCTGTTTTCATTTTTGATCATAATTATTTTATGATTATTTATAGGTTTTATTCAAAGCGTCTACAAATCCTTAATACCCAACCATTCCTGGACC ************************************************.........(((.((((.............................(((((((((.....))))))))))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR553488 RT_0-2 hours eggs	M053 female body	GSM343915 embryo	M024 male body
..........AGCTTCCGGTAGCAAGC.....................................................................................................................................................	17	1	2	1.00	2	2	0	0	0	0	0	0	0
.............................................................................................................................................TCTACTAATCCTTAATACCAGA.............	22	3	1	1.00	1	0	0	1	0	0	0	0	0
..............................................................................................................................................CTACTAATCCTTAATACCAGA.............	21	3	1	1.00	1	0	1	0	0	0	0	0	0
..................................................................................................ATCATAATTATTTTATGG............................................................	18	1	3	0.33	1	0	0	0	1	0	0	0	0
............................................................................................TTTTTGATCAAAATTATTTTT...............................................................	21	2	6	0.17	1	0	0	0	0	1	0	0	0
...............................................................TGAGTGAATTGAATT..................................................................................................	15	0	7	0.14	1	1	0	0	0	0	0	0	0
.......................................................................................CTTCAGGTTTGATCATAATT.....................................................................	20	3	9	0.11	1	0	0	0	0	0	1	0	0
...........................CTATTTTCTCGTTTTGTGT..................................................................................................................................	19	2	13	0.08	1	0	0	0	0	0	0	1	0
.............................................................................................................................................GCTACAAGTCGTTAATACC................	19	3	14	0.07	1	0	0	0	0	0	0	0	1
.......................................................TGAATGGTTGAGTGAAGTGA.....................................................................................................	20	3	14	0.07	1	0	1	0	0	0	0	0	0
...........................................................................ATTTCTTGCTGTCTT......................................................................................	15	1	20	0.05	1	1	0	0	0	0	0	0	0
...................................................................................................................................................AATCCTAGATTCCCAACCA..........	19	3	20	0.05	1	0	0	0	0	1	0	0	0

ATATACAAAGTCGAAGGCCTTCGTTCGGATAAAAGAGCGAAACAAAATTCCATAAATTTAACAACTCACTTAACTTAAAGAACGACAAAAGTAAAAACTAGTATTAATAAAATACTAATAAATATCCAAAATAAGTTTCGCAGATGTTTAGGAATTATGGGTTGGTAAGGACCTGG ************************************************.........(((.((((.............................(((((((((.....))))))))))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	M053 female body	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
.............................................................................................................................................AGATGATTAGGAATTATGG................	19	1	1	2.00	2	1	1	0	0	0	0
..............................................................................................................................................GATGATTAGGAATTATGGTCT.............	21	3	1	2.00	2	0	2	0	0	0	0
............................................CAATTCCATAAATGTAACA.................................................................................................................	19	2	5	1.20	6	0	0	4	2	0	0
...........................................................................................................................................TGAGATGATTAGGAATTATGG................	21	3	2	1.00	2	2	0	0	0	0	0
............................................................................................................................................GAGATGATTAGGAATTATGG................	20	2	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................AGATGATTAGGAATTATGGTC..............	21	3	2	0.50	1	1	0	0	0	0	0
.............................................................................................................................................AGATGATTAGGAATTA...................	16	1	10	0.30	3	3	0	0	0	0	0
.............................................AATTCCCTAAATTTAAC..................................................................................................................	17	1	5	0.20	1	0	0	0	0	0	1
.............................................AATTCCATAAATGTAACAT................................................................................................................	19	2	13	0.15	2	0	0	0	0	2	0
...............................................................................................................................................ATGATTAGGAATTATGGTC..............	19	3	20	0.10	2	0	0	0	0	2	0
.............................................AATTCCATAAATGTAACATG...............................................................................................................	20	3	20	0.05	1	0	0	1	0	0	0
..............................................ATTCCATAAATGTAACAT................................................................................................................	18	2	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................................GGGAGTTATGGGCTGGTAA........	19	3	20	0.05	1	0	0	1	0	0	0

Species	Coordinate	ID	Alignment
droSim2	node_59901:1393-1568 +	dsi_2289	TATATGTTTCAGCTTCCGGAAGCAAGCCTATTTTCTCGCTTTGTT-------TTAAGGTATTTAAAT--------------TGTTGAGTGAAT-------------------------TGAATTTCTTGCTGTTTTCATT---------TTT-GATCATAATTATTTT-----ATGATTATTTATAGGTTTTATTCAAAG----------------------------------------------------------------------CGTCTACAAATCCTTAATACCCAACCATTCCTGGACC
droSec2	scaffold_5:1588121-1588200 +		CTTGATTTCC--------------------------TTTTTGATT-------TTAAGGCACTTTATC--------------TCTTGCCTAAAC-------------------------TGGTATTCTTGTTGTTT--------------CTT-AATAACAACTGTTT--------------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2L:7347931-7348088 -		CTTGATTTCC--------------------------TTTTTGATT-------TTAAGGCACTTTATC--------------TCTTGCCTAAAC-------------------------TGGTATTCTTGTTGTTT--------------CTT-AATAACAACTGTTTCCGCTATT-----CTTATCTCCTTTACTGAAATAATTGATGAATAGGCTTTATTTCTTGTA---------------------------------------------------------ATGACTGAAGAACTGTTTGAAT
droEre2	scaffold_4843:30330-30429 -		CTG-ATTTCT--------------------------TTGTTGTTT-------TGCAAATACTTTATC--------------TCTTGACTGAAT-------------------------TGAAGTTTTTGCTGCTT--------------TT--TATGATTATCCTTTCAGCTAATGATTACCTG----------------------------------------------------------------------------------------------------------------------ATGGT
droYak3	v2_chrUn_3391:9525-9604 +		CTTGATTTCC--------------------------TTTTTGATT-------TTAAGGCACTTTATC--------------TCTTGCCTAAAC-------------------------TGGTATTCTTGTTGTTT--------------CTT-AATAACAACTGTTT--------------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409010:708-815 -		CTTAATTTCT--------------------------CTGTTGGTT-------TTCAGGCACTTTATT--------------TCTTCTCTATAT-------------------------TGATATTCTTGCTGTTT--------------CTT-TATAACAACTCTTTCAGCTTGT-----TTTAACTCTTTTACTGAAAG-----------------------------------------------------------------------------------------------------------
droBia1	scf7180000301470:164213-164378 +		TAAACTGATAGGCTTGGA--AATAAATTTTTT----TAATTGGTT-------CTGAAT--TTCGAA-TTAAATTTTATCAAAATCGAAAAAAT-------------------------T---------------ATATCTTTCGTGTTTTTTTCACATATAACCTTTTAGCTTG---------------------------------------------------GAAATAACATTTTTTAAAT---------------------------TTTTATGAA-------CTTAGAAAAAGGGTCTACAA
droTak1	scf7180000414300:10986-11173 -		TATAAGCTTCGGCTGGCCGAAGGTAGCTTCCTTTCTTGTTTTA-TTTTCA---------ATTTGTA-TGTATTTAAT---------GTGTTTTTATATGTTTTATATTTTAAATGTTTTATTCTCCTTAGTATTC--------------TT--CATAATCGCC----TACCT-------------------T------------------------------------------------------------ATGGGAATGTTTTTCTACTCGCTGCCAATATTTTTGATACAAGCATTTCTGGGAC
droEle1	scf7180000490173:1590-1754 -		TATTAACTTCGGCTTGCCGAAGTTTGCTTCCTTTCTTGTTTTT-TATTAA---------ATTTTAACTGTTAACAAC---------AAACAATTAAATGTTTAGTATAATTTAAG----------------------------------TTT-TATCAAAATAACTTC-----AT----TT----------T------------------------------------------------------------ATTAAGTTGTTTTTAAAAAGGATGTAAACTCAATATAAACAAAC---------AT
droRho1	scf7180000779825:1631-1791 +		TATAAACTTCGGCTTGCCGAAGTTTGCTTCCTTTCTTGTTTTT-AGTTAATTCCAAAG--TTAGTA-GGTATTTTAGAAAGGACCAGAAGAAC-------------------------T---------------ATATTTTTTGAATA-TTT-GATAATAGTATT-TT-----AT-------T------------AA----------------------------CAAGTAGTATTTTTCCGAAA-------------------------CTTCCATAAATAC----------------------CT
droFic1	scf7180000449599:13318-13452 +		TATAAGCTTCGGCTTGCCGAACCCAACTTCCTTTCTTGTTTTA-T-------TTAAAGGATTTGAAT--------------TTTCGGTTAAAT-------------------------CGTTCGTATTTTTAACT--------------T-----------------------A---------------------------------------------------TTAATGGTATCTATCGAATTCCTATTTAATTTAT-------------------------------------TTTTATTGAAA
droKik1	scf7180000299832:2258-2364 +		CTTAATTTCT--------------------------CTGTTGGTT-------TTCAGGCACCTTATT--------------TCTTCTCTAAAT-------------------------TGATATTCTTGCTGTTT--------------CTT-TATAACCACCCTTTCAGCTTGT-----TTTAACT-TTTTAATGAAAG-----------------------------------------------------------------------------------------------------------
droAna3	scaffold_13230:402233-402316 -		TTTTATAT----------------------------------------------AAATTATTTAATA--------------TGTTCAATTAAT-------------------------TCAATTTAAAAAAATTTTAATTTT---------T-ATTTATACAAGTTAT-----GTAATTAGTT---------------------------------------------------------------------------------------------------------------------------A
droBip1	scf7180000393546:13300-13362 +		TTAAAATTAT--------------------------TTA-------------------------CAT--------------TATTGAATAATT-------------------------T--TAATTTCTTAATTT--------------CTT-AAGAATAATTTC-----------------------------------------------------------------------------------------------------------------------------------------TTAAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TATATGTTTCAGCTTCCGGAAGCAAGCCTATTTTCTCGCTTTGTT-------TTAAGGTATTTAAAT--------------TGTTGAGTGAAT-------------------------TGAATTTCTTGCTGTTTTCATT---------TTT-GATCATAATTATTTT-----ATGATTATTTATAGGTTTTATTCAAAG----------------------------------------------------------------------CGTCTACAAATCCTTAATACCCAACCATTCCTGGACC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................ATCATAATTATTTT-----ATGG..................................................................................................................................	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TGAGTGAAT-------------------------TGAATT.......................................................................................................................................................................................	15	7	0.14	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CTTGATTTCC--------------------------TTTTTGATT-------TTAAGGCACTTTATC--------------TCTTGCCTAAAC-------------------------TGGTATTCTTGTTGTTT--------------CTT-AATAACAACTGTTT--------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................TTTGATT-------TTAAGGCACTTTAT.................................................................................................................................................................................................................................................	21	12	7.92	95	0	3	91	1
............................................T-------TTAAGGCACTTTATC--------------TCTTG.............................................................................................................................................................................................................................	21	12	3.00	36	2	0	34	0
..........................................................................................AAC-------------------------TGGTATTCTTGTTGTTT--------------C.............................................................................................................................................................	21	16	1.56	25	1	0	24	0
.....................................TTTTGATT-------TTAAGGCACTTTA..................................................................................................................................................................................................................................................	21	12	1.50	18	1	1	16	0
....................................................................................TGCCTAAAC-------------------------TGGTATTCTTGT.................................................................................................................................................................................	21	16	1.38	22	0	0	22	0
...................................................................................TTGCCTAAAC-------------------------TGGTATTCTTGT.................................................................................................................................................................................	22	16	1.25	20	0	1	17	2
..........................................ATT-------TTAAGGCACTTTATC--------------TCT...............................................................................................................................................................................................................................	21	12	1.25	15	1	0	14	0
......................................................................................CCTAAAC-------------------------TGGTATTCTTGTTG...............................................................................................................................................................................	21	16	1.19	19	0	0	19	0
.........C--------------------------TTTTTGATT-------TTAAGGCACTT....................................................................................................................................................................................................................................................	21	12	1.17	14	2	0	12	0
.......................................TTGATT-------TTAAGGCACTTTATC--------------..................................................................................................................................................................................................................................	21	12	1.00	12	0	1	11	0
........................................................................................TAAAC-------------------------TGGTATTCTTGTTGTT.............................................................................................................................................................................	21	16	0.94	15	0	1	14	0
....................................................TTAAGGCACTTTATC--------------TCTTGC............................................................................................................................................................................................................................	21	12	0.92	11	1	0	10	0
..............................................................TTATC--------------TCTTGCCTAAAC-------------------------TGGT.........................................................................................................................................................................................	21	16	0.88	14	2	0	12	0
....................................TTTTTGATT-------TTAAGGCACTTT...................................................................................................................................................................................................................................................	21	12	0.75	9	0	0	9	0
...........................................................................................AC-------------------------TGGTATTCTTGTTGTTT--------------CT............................................................................................................................................................	21	16	0.69	11	0	1	10	0
.........................................................................................AAAC-------------------------TGGTATTCTTGTTGTTT--------------..............................................................................................................................................................	21	16	0.69	11	2	1	8	0
.......................................TTGATT-------TTAAGGCACTTTAT.................................................................................................................................................................................................................................................	20	12	0.67	8	0	1	7	0
.............................................................TTTATC--------------TCTTGCCTAAAC-------------------------TGG..........................................................................................................................................................................................	21	12	0.58	7	3	0	4	0
....................................TTTTTGATT-------TTAAGGCACTTTA..................................................................................................................................................................................................................................................	22	12	0.58	7	0	0	7	0
........................................TGATT-------TTAAGGCACTTTATC--------------T.................................................................................................................................................................................................................................	21	12	0.50	6	2	0	4	0
.......................................................................................CTAAAC-------------------------TGGTATTCTTGTTGT..............................................................................................................................................................................	21	16	0.50	8	2	0	6	0
.........................................................................................................................TATTCTTGTTGTTT--------------CTT-AATA......................................................................................................................................................	21	16	0.50	8	0	0	8	0
.......................................................................................CTAAAC-------------------------TGGTATTCTTGTTG...............................................................................................................................................................................	20	16	0.44	7	0	0	7	0
CTTGATTTCC--------------------------TTTTTGATT-------TT.............................................................................................................................................................................................................................................................	21	16	0.44	7	1	0	6	0
....................................TTTTTGATT-------TTAAGGCACTT....................................................................................................................................................................................................................................................	20	12	0.42	5	0	0	5	0
............................................................................................C-------------------------TGGTATTCTTGTTGTTT--------------CTT-..........................................................................................................................................................	21	16	0.38	6	1	1	4	0
........................................................................................................................GTATTCTTGTTGTTT--------------CTT-AAT.......................................................................................................................................................	21	16	0.38	6	1	0	5	0
......................................TTTGATT-------TTAAGGCACTTTATC--------------..................................................................................................................................................................................................................................	22	12	0.33	4	0	1	3	0
........CC--------------------------TTTTTGATT-------TTAAGGCACT.....................................................................................................................................................................................................................................................	21	12	0.33	4	0	0	4	0
...............................................................TATC--------------TCTTGCCTAAAC-------------------------TGGTA........................................................................................................................................................................................	21	16	0.25	4	3	0	1	0
.......TCC--------------------------TTTTTGATT-------TTAAGGCAC......................................................................................................................................................................................................................................................	21	16	0.25	4	1	0	3	0
....................................TTTTTGATT-------TTAAGGCACT.....................................................................................................................................................................................................................................................	19	12	0.25	3	0	0	3	0
......................................................................................................................TGGTATTCTTGTTGTTT--------------CTT-A.........................................................................................................................................................	21	16	0.25	4	0	0	4	0
.....................................................TAAGGCACTTTATC--------------TCTTGCC...........................................................................................................................................................................................................................	21	12	0.25	3	2	0	1	0
.........................................GATT-------TTAAGGCACTTTATC--------------TC................................................................................................................................................................................................................................	21	12	0.25	3	0	0	3	0
.........................................................................................................................TATTCTTGTTGTTT--------------CTT-AAT.......................................................................................................................................................	20	16	0.25	4	0	0	4	0
...........................................TT-------TTAAGGCACTTTATC--------------TCTT..............................................................................................................................................................................................................................	21	12	0.25	3	0	0	3	0
.....TTTCC--------------------------TTTTTGATT-------TTAAGGC........................................................................................................................................................................................................................................................	21	16	0.25	4	0	0	3	1
....ATTTCC--------------------------TTTTTGATT-------TTAAGG.........................................................................................................................................................................................................................................................	21	16	0.25	4	1	0	3	0
.................................................................................................................................TTGTTT--------------CTT-AATAACAACTGT..............................................................................................................................................	21	16	0.19	3	0	0	3	0
......TTCC--------------------------TTTTTGATT-------TTAAGGCA.......................................................................................................................................................................................................................................................	21	16	0.19	3	0	0	3	0
..................................................................................................................................TGTTT--------------CTT-AATAACAACTGTT.............................................................................................................................................	21	16	0.19	3	2	0	1	0
............................................................CTTTATC--------------TCTTGCCTAAAC-------------------------TG...........................................................................................................................................................................................	21	12	0.17	2	2	0	0	0
.......TCC--------------------------TTTTTGATT-------TTAAGGCACT.....................................................................................................................................................................................................................................................	22	12	0.17	2	0	0	2	0
...........................................TT-------TTAAGGCACTTTATC--------------TCTTG.............................................................................................................................................................................................................................	22	12	0.17	2	0	0	2	0
.....................................TTTTGATT-------TTAAGGCACTTTAT.................................................................................................................................................................................................................................................	22	12	0.17	2	0	0	2	0
.........................................GATT-------TTAAGGCACTTTATC--------------T.................................................................................................................................................................................................................................	20	12	0.17	2	0	0	2	0
....................................TTTTTGATT-------TTAAGGCACTTTATC--------------..................................................................................................................................................................................................................................	24	12	0.17	2	0	0	2	0
.....................................TTTTGATT-------TTAAGGCACTTT...................................................................................................................................................................................................................................................	20	12	0.17	2	0	0	2	0
..........................................................................................................................ATTCTTGTTGTTT--------------CTT-AATAA.....................................................................................................................................................	21	16	0.13	2	0	0	2	0
......................................................................................CCTAAAC-------------------------TGGTATTCTTGTT................................................................................................................................................................................	20	16	0.13	2	0	0	2	0
...GATTTCC--------------------------TTTTTGATT-------TTAAG..........................................................................................................................................................................................................................................................	21	16	0.13	2	0	0	2	0
........................................................................................TAAAC-------------------------TGGTATTCTTGTTGT..............................................................................................................................................................................	20	16	0.13	2	0	0	2	0
....ATTTCC--------------------------TTTTTGATT-------TTAAG..........................................................................................................................................................................................................................................................	20	16	0.13	2	0	0	2	0
............................................................................................C-------------------------TGGTATTCTTGTTGTTT--------------CT............................................................................................................................................................	20	16	0.13	2	1	0	1	0
..........................................................................................................................ATTCTTGTTGTTT--------------CTT-AAT.......................................................................................................................................................	19	16	0.13	2	0	0	2	0
...................................................................................TTGCCTAAAC-------------------------TGGTATTCTTG..................................................................................................................................................................................	21	16	0.13	2	2	0	0	0
....................................................TTAAGGCACTTTATC--------------TCTTGCC...........................................................................................................................................................................................................................	22	12	0.08	1	1	0	0	0
........................................TGATT-------TTAAGGCACTTTATC--------------TCTTGCC...........................................................................................................................................................................................................................	27	12	0.08	1	1	0	0	0
..........................................ATT-------TTAAGGCACTTTATC--------------TC................................................................................................................................................................................................................................	20	12	0.08	1	0	0	1	0
........................................TGATT-------TTAAGGCACTTTATC--------------..................................................................................................................................................................................................................................	20	12	0.08	1	0	0	0	1
....................................................TTAAGGCACTTTATC--------------TCTTG.............................................................................................................................................................................................................................	20	12	0.08	1	0	0	1	0
...........................................................ACTTTATC--------------TCTTGCCTAAAC-------------------------T............................................................................................................................................................................................	21	12	0.08	1	1	0	0	0
.............................................................TTTATC--------------TCTTGCCTAAAC-------------------------TGGT.........................................................................................................................................................................................	22	12	0.08	1	0	0	1	0
............................................................CTTTATC--------------TCTTGCCTAAAC-------------------------TGG..........................................................................................................................................................................................	22	12	0.08	1	0	0	1	0
........CC--------------------------TTTTTGATT-------TTAAGGCACTTTATC--------------..................................................................................................................................................................................................................................	26	12	0.08	1	0	0	1	0
......................................................AAGGCACTTTATC--------------TCTTGCC...........................................................................................................................................................................................................................	20	12	0.08	1	0	0	1	0
......................................TTTGATT-------TTAAGGCACTTTA..................................................................................................................................................................................................................................................	20	12	0.08	1	0	0	1	0
........................................TGATT-------TTAAGGCACTTTA..................................................................................................................................................................................................................................................	18	12	0.08	1	0	0	1	0
..........................................................CACTTTATC--------------TCTTGCCTAAAC-------------------------.............................................................................................................................................................................................	21	12	0.08	1	0	0	1	0
............................................................................................................................TCTTGTTGTTT--------------CTT-AATAACA...................................................................................................................................................	21	16	0.06	1	1	0	0	0
........................................................................................TAAAC-------------------------TGGTATTCTTGTTGTTT--------------..............................................................................................................................................................	22	16	0.06	1	0	0	1	0
..............................................................TTATC--------------TCTTGCCTAAAC-------------------------TGG..........................................................................................................................................................................................	20	16	0.06	1	1	0	0	0
.......TCC--------------------------TTTTTGATT-------TTAAGG.........................................................................................................................................................................................................................................................	18	16	0.06	1	0	0	1	0
.......................................................................................CTAAAC-------------------------TGGTATTCTTGTTGTT.............................................................................................................................................................................	22	16	0.06	1	0	0	1	0
......................................................................................CCTAAAC-------------------------TGGTATTCTTGTTGTTT--------------..............................................................................................................................................................	24	16	0.06	1	0	0	1	0
..............................................................................................................................TTGTTGTTT--------------CTT-AATAACA...................................................................................................................................................	19	16	0.06	1	1	0	0	0
.....TTTCC--------------------------TTTTTGATT-------TTAAGGCAC......................................................................................................................................................................................................................................................	23	16	0.06	1	0	0	0	1
CTTGATTTCC--------------------------TTTTTGATT-------T..............................................................................................................................................................................................................................................................	20	16	0.06	1	0	0	1	0
..........................................................................................AAC-------------------------TGGTATTCTTGTTGTTT--------------..............................................................................................................................................................	20	16	0.06	1	0	0	1	0
.............................................................................................................................CTTGTTGTTT--------------CTT-AATAACA...................................................................................................................................................	20	16	0.06	1	0	0	1	0
...................................................................................TTGCCTAAAC-------------------------TGGTATTCTTGTTG...............................................................................................................................................................................	24	16	0.06	1	0	0	1	0
........CC--------------------------TTTTTGATT-------TTAAGGCA.......................................................................................................................................................................................................................................................	19	16	0.06	1	0	0	1	0
.................................................................TC--------------TCTTGCCTAAAC-------------------------TGGTATT......................................................................................................................................................................................	21	16	0.06	1	0	0	1	0
.....................................................................................GCCTAAAC-------------------------TGGTATTCTTGTTG...............................................................................................................................................................................	22	16	0.06	1	0	0	1	0
..........................................................................................................................ATTCTTGTTGTTT--------------CTT-AATA......................................................................................................................................................	20	16	0.06	1	0	0	1	0
...............................................................TATC--------------TCTTGCCTAAAC-------------------------TGGT.........................................................................................................................................................................................	20	16	0.06	1	1	0	0	0
.................................................................................TCTTGCCTAAAC-------------------------TGGTATTCT....................................................................................................................................................................................	21	16	0.06	1	1	0	0	0
...........................................................................................AC-------------------------TGGTATTCTTGTTGTTT--------------C.............................................................................................................................................................	20	16	0.06	1	0	0	1	0
.........................................................................................................................TATTCTTGTTGTTT--------------CTT-AA........................................................................................................................................................	19	16	0.06	1	0	0	1	0
..............................................................................................................................TTGTTGTTT--------------CTT-AATAACAAC.................................................................................................................................................	21	16	0.06	1	1	0	0	0
....................................................................................................................................TTT--------------CTT-AATAACAACTGTTT--------------------------------------------------------------------------------------------------------------------------------------------	20	16	0.06	1	0	0	1	0
...........................................................................................AC-------------------------TGGTATTCTTGTTGTTT--------------..............................................................................................................................................................	19	16	0.06	1	0	0	1	0
..............................................................TTATC--------------TCTTGCCTAAAC-------------------------TGGTA........................................................................................................................................................................................	22	16	0.06	1	1	0	0	0

dm3

CTTGATTTCC--------------------------TTTTTGATT-------TTAAGGCACTTTATC--------------TCTTGCCTAAAC-------------------------TGGTATTCTTGTTGTTT--------------CTT-AATAACAACTGTTTCCGCTATT-----CTTATCTCCTTTACTGAAATAATTGATGAATAGGCTTTATTTCTTGTA---------------------------------------------------------ATGACTGAAGAACTGTTTGAAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................TGACTGAAGAACTGTTTGAAT	21	20	32.90	658	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	651	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................A---------------------------------------------------------ATGACTGAAGAACTGTTTGA..	21	20	6.15	123	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	111	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TTTTGATT-------TTAAGGCACTTTATC--------------TCT...............................................................................................................................................................................................................................	26	20	3.95	79	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	35	0	0	0	0	0	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................A---------------------------------------------------------ATGACTGAAGAACTGTTTGAAT	23	20	3.55	71	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................TTTGATT-------TTAAGGCACTTTATC--------------TCT...............................................................................................................................................................................................................................	25	20	3.20	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33	0	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TACTGAAATAATTGATGAATAGGCTT..........................................................................................	26	20	2.35	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TA---------------------------------------------------------ATGACTGAAGAACTGTTTGAAT	24	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TTTTGATT-------TTAAGGCACTTTATC--------------..................................................................................................................................................................................................................................	23	20	1.50	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................TAATTGATGAATAGGCT...........................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................TTATC--------------TCTTGCCTAAAC-------------------------TGGTATTCT....................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................GTTT--------------CTT-AATAACAACTGTTT............................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................CTAAAC-------------------------TGGTATTCTTGTTGTT.............................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TTCCGCTATT-----CTTATCTCCTTTAC.................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................GTTT--------------CTT-AATAACAACTGTTTCCG.........................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................CTTTACTGAAATAATTGATG...................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................TT-------TTAAGGCACTTTATC--------------TCTGC.............................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TAATTGATGAATAGGCTTTATTTCTT..................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CTG-ATTTCT--------------------------TTGTTGTTT-------TGCAAATACTTTATC--------------TCTTGACTGAAT-------------------------TGAAGTTTTTGCTGCTT--------------TT--TATGATTATCCTTTCAGCTAATGATTACCTG----------------------------------------------------------------------------------------------------------------------ATGGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................GTTGTTT-------TGCAAATACTTTATC--------------TCT...............................................................................................................................................................................................................................	25	3	0.33	1	1	0	0	0	0	0	0

droYak3

CTTGATTTCC--------------------------TTTTTGATT-------TTAAGGCACTTTATC--------------TCTTGCCTAAAC-------------------------TGGTATTCTTGTTGTTT--------------CTT-AATAACAACTGTTT--------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................TGATT-------TTAAGGCACTTTATC--------------TCTTGCC...........................................................................................................................................................................................................................	27	10	5.30	53	0	11	42	0	0	0	0	0	0	0	0
......................................TTTGATT-------TTAAGGCACTTTATC--------------TCTTGCC...........................................................................................................................................................................................................................	29	10	3.30	33	0	3	30	0	0	0	0	0	0	0	0
......................................TTTGATT-------TTAAGGCACTTTATC--------------TCT...............................................................................................................................................................................................................................	25	10	3.20	32	0	18	14	0	0	0	0	0	0	0	0
.......................................TTGATT-------TTAAGGCACTTTATC--------------TCTTGCC...........................................................................................................................................................................................................................	28	10	2.70	27	0	1	26	0	0	0	0	0	0	0	0
.....................................TTTTGATT-------TTAAGGCACTTTATC--------------TCT...............................................................................................................................................................................................................................	26	10	2.00	20	0	9	11	0	0	0	0	0	0	0	0
...........................................TT-------TTAAGGCACTTTATC--------------TCTTGCC...........................................................................................................................................................................................................................	24	10	1.20	12	0	1	11	0	0	0	0	0	0	0	0
....................................TTTTTGATT-------TTAAGGCACTTTATC--------------TCT...............................................................................................................................................................................................................................	27	9	1.11	10	0	3	7	0	0	0	0	0	0	0	0
.....................................................TAAGGCACTTTATC--------------TCTTGCCTAAAC-------------------------T............................................................................................................................................................................................	27	9	0.89	8	0	1	1	0	0	0	0	0	0	0	6
.................................................................TC--------------TCTTGCCTAAAC-------------------------TGGTATTCTTG..................................................................................................................................................................................	25	11	0.73	8	0	8	0	0	0	0	0	0	0	0	0
.........................................GATT-------TTAAGGCACTTTATC--------------TCTTGCC...........................................................................................................................................................................................................................	26	10	0.70	7	0	0	7	0	0	0	0	0	0	0	0
..TGATTTCC--------------------------TTTTTGATT-------TTAAGGCACT.....................................................................................................................................................................................................................................................	27	10	0.70	7	0	0	1	0	0	0	0	0	0	0	6
...............................................................TATC--------------TCTTGCCTAAAC-------------------------TGGTATTCTTG..................................................................................................................................................................................	27	11	0.55	6	0	6	0	0	0	0	0	0	0	0	0
..TGATTTCC--------------------------TTTTTGATT-------TTAAGGCACTT....................................................................................................................................................................................................................................................	28	8	0.50	4	0	3	1	0	0	0	0	0	0	0	0
......................................TTTGATT-------TTAAGGCACTTTATC--------------TCC...............................................................................................................................................................................................................................	25	10	0.50	5	0	0	5	0	0	0	0	0	0	0	0
...............................................................TATC--------------TCTTGCCTAAAC-------------------------TGGTATTCT....................................................................................................................................................................................	25	11	0.45	5	0	4	1	0	0	0	0	0	0	0	0
........................................TGATT-------TTAAGGCACTTTATC--------------TCTTGCCT..........................................................................................................................................................................................................................	28	9	0.44	4	0	0	4	0	0	0	0	0	0	0	0
......................................TTTGATT-------TTAAGGCACTTTATC--------------TCTT..............................................................................................................................................................................................................................	26	10	0.40	4	0	0	4	0	0	0	0	0	0	0	0
......................................TTTGATT-------TTAAGGCACTTTATC--------------TCTTGC............................................................................................................................................................................................................................	28	10	0.40	4	0	2	2	0	0	0	0	0	0	0	0
..............................................................TTATC--------------TCTTGCCTAAAC-------------------------TGGTATTCT....................................................................................................................................................................................	26	11	0.36	4	0	3	1	0	0	0	0	0	0	0	0
............................................T-------TTAAGGCACTTTATC--------------TCTTGCCTAAAC-------------------------T............................................................................................................................................................................................	29	9	0.33	3	0	0	3	0	0	0	0	0	0	0	0
......................................................................................................................TGGTATTCTTGTTGTTT--------------CTT-AATAAC....................................................................................................................................................	26	13	0.31	4	0	0	4	0	0	0	0	0	0	0	0
........................................TGATT-------TTAAGGCACTTTATC--------------TCTTG.............................................................................................................................................................................................................................	25	10	0.30	3	0	3	0	0	0	0	0	0	0	0	0
......................................TTTGATT-------TTAAGGCACTTTATC--------------TC................................................................................................................................................................................................................................	24	10	0.30	3	0	1	2	0	0	0	0	0	0	0	0
.......................................TTGATT-------TTAAGGCACTTTATC--------------TCT...............................................................................................................................................................................................................................	24	10	0.30	3	0	2	1	0	0	0	0	0	0	0	0
...........................................................................................................................TTCTTGTTGTTT--------------CTT-AATAACAAC.................................................................................................................................................	24	16	0.25	4	0	3	1	0	0	0	0	0	0	0	0
.........................................................................................................................TATTCTTGTTGTTT--------------CTT-AATAACAAC.................................................................................................................................................	26	13	0.23	3	0	1	2	0	0	0	0	0	0	0	0
...........................................TT-------TTAAGGCACTTTATC--------------TCTTGCCT..........................................................................................................................................................................................................................	25	9	0.22	2	0	0	2	0	0	0	0	0	0	0	0
..TGATTTCC--------------------------TTTTTGATT-------TTAAGGCAC......................................................................................................................................................................................................................................................	26	10	0.20	2	0	1	1	0	0	0	0	0	0	0	0
.......................................TTGATT-------TTAAGGCACTTTATC--------------TCTT..............................................................................................................................................................................................................................	25	10	0.20	2	0	0	2	0	0	0	0	0	0	0	0
.....................................TTTTGATT-------TTAAGGCACTTTATC--------------TCTT..............................................................................................................................................................................................................................	27	10	0.20	2	0	1	1	0	0	0	0	0	0	0	0
......................................TTTGATT-------TTAAGGCACTTTATC--------------TCTTG.............................................................................................................................................................................................................................	27	10	0.20	2	0	2	0	0	0	0	0	0	0	0	0
....................................................TTAAGGCACTTTATC--------------TCTTGCC...........................................................................................................................................................................................................................	22	10	0.20	2	0	1	1	0	0	0	0	0	0	0	0
.TTGATTTCC--------------------------TTTTTGATT-------TTAAGGCAC......................................................................................................................................................................................................................................................	27	10	0.20	2	0	0	2	0	0	0	0	0	0	0	0
.............................................................TTTATC--------------TCTTGCCTAAAC-------------------------TGGTATTCT....................................................................................................................................................................................	27	11	0.18	2	0	2	0	0	0	0	0	0	0	0	0
....................................................................................TGCCTAAAC-------------------------TGGTATTCTTGTTGT..............................................................................................................................................................................	24	12	0.17	2	0	1	1	0	0	0	0	0	0	0	0
.TTGATTTCC--------------------------TTTTTGATT-------TTAAGGCACTT....................................................................................................................................................................................................................................................	29	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................TCTTGTTGTTT--------------CTT-AATAACAAC.................................................................................................................................................	23	16	0.13	2	0	1	1	0	0	0	0	0	0	0	0
......TTCC--------------------------TTTTTGATT-------TTAAGGCACTTTATC--------------..................................................................................................................................................................................................................................	28	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
...........................................TT-------TTAAGGCACTTTATC--------------TCTTGCCTA.........................................................................................................................................................................................................................	26	9	0.11	1	0	0	0	1	0	0	0	0	0	0	0
....................................TTTTTGATT-------TTAAGGCACTTTATC--------------..................................................................................................................................................................................................................................	24	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
......................................................AAGGCACTTTATC--------------TCTTGCCTAAAC-------------------------TGG..........................................................................................................................................................................................	28	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
....................................TTTTTGATT-------TTAAGGCACTTTATC--------------TCC...............................................................................................................................................................................................................................	27	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
....................................................TTAAGGCACTTTATC--------------TCTTGCCTAAAC-------------------------.............................................................................................................................................................................................	27	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................TAAGGCACTTTATC--------------TCTTGCCTAAAC-------------------------TGG..........................................................................................................................................................................................	29	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
.......................................TTGATT-------TTAAGGCACTTTATC--------------TCTTGCCT..........................................................................................................................................................................................................................	29	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
.TTGATTTCC--------------------------TTTTTGATT-------TTAAGGCA.......................................................................................................................................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................CACTTTATC--------------TCTTGCCTAAAC-------------------------TGG..........................................................................................................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...........................................TT-------TTAAGGCACTTTATC--------------TCTTGC............................................................................................................................................................................................................................	23	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
.....................................TTTTGATT-------TTAAGGCACTTTATC--------------TCC...............................................................................................................................................................................................................................	26	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
..TGATTTCC--------------------------TTTTTGATT-------TTAAGGCA.......................................................................................................................................................................................................................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
CTTGATTTCC--------------------------TTTTTGATT-------TTAAGGCAC......................................................................................................................................................................................................................................................	28	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
......................................TTTGATT-------TTAAGGCACTTTATC--------------TCTTT.............................................................................................................................................................................................................................	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................TC--------------TCTTGCCTAAAC-------------------------TGGTATTCTTGTTG...............................................................................................................................................................................	28	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................TAAGGCACTTTATC--------------TCTTGCC...........................................................................................................................................................................................................................	21	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
.......................................TTGATT-------TTAAGGCACTTTATC--------------TCTTG.............................................................................................................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.........................................GATT-------TTAAGGCACTTTATC--------------TCT...............................................................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
............................................T-------TTAAGGCACTTTATC--------------TCTTGCC...........................................................................................................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................CACTTTATC--------------TCTTGCCTAAAC-------------------------TGGTA........................................................................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.....TTTCC--------------------------TTTTTGATT-------TTAAGGCACT.....................................................................................................................................................................................................................................................	24	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
..TGATTTCC--------------------------TTTTTGATT-------TTAAGGCACC.....................................................................................................................................................................................................................................................	27	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
..TGATTTCC--------------------------TTTTTGATT-------TTAAGGC........................................................................................................................................................................................................................................................	24	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
.TTGATTTCC--------------------------TTTTTGATT-------TTAAGGCACT.....................................................................................................................................................................................................................................................	28	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................TC--------------TCTTGCCTAAAC-------------------------TGGTATTCTTGT.................................................................................................................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................TTATC--------------TCTTGCCTAAAC-------------------------TGGTATTC.....................................................................................................................................................................................	25	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................TTTATC--------------TCTTGCCTAAAC-------------------------TGGTATTCTTG..................................................................................................................................................................................	29	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................TC--------------TCTTGCCTAAAC-------------------------TGGTATTCT....................................................................................................................................................................................	23	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................TTTATC--------------TCTTGCCTAAAC-------------------------TGGTATTCC....................................................................................................................................................................................	27	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................TCTTGCCTAAAC-------------------------TGGTATTCTTGT.................................................................................................................................................................................	24	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................TTATC--------------TCTTGCCTAAAC-------------------------TGGTATTCTTGT.................................................................................................................................................................................	29	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................TGCCTAAAC-------------------------TGGTATTCTTGTTGTTT--------------CC............................................................................................................................................................	28	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................TATC--------------TCTTGCCTAAAC-------------------------TGGTT........................................................................................................................................................................................	21	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................TTTATC--------------TCTTGCCTAAAC-------------------------TG...........................................................................................................................................................................................	20	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................TGCCTAAAC-------------------------TGGTATTCTTGTTGTT.............................................................................................................................................................................	25	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................TGCCTAAAC-------------------------TGGTATTCTTGTTGTTT--------------CT............................................................................................................................................................	28	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................TTTATC--------------TCTTGCCTAAAC-------------------------TGGTATT......................................................................................................................................................................................	25	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................TC--------------TCTTGCCTAAAC-------------------------TGGTA........................................................................................................................................................................................	19	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................TTATC--------------TCTTGCCTAAAC-------------------------TGGTA........................................................................................................................................................................................	22	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................TATC--------------TCTTGCCTAAAC-------------------------TGGTA........................................................................................................................................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................TAAAC-------------------------TGGTATTCTTGTTGTTT--------------CTT-AAT.......................................................................................................................................................	28	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................TGGTATTCTTGTTGTTT--------------CTT-AATAACA...................................................................................................................................................	27	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................AAAC-------------------------TGGTATTCTTGTTGTTT--------------..............................................................................................................................................................	21	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................C-------------------------TGGTATTCTTGTTGTTT--------------CTT-..........................................................................................................................................................	21	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................TGGTATTCTTGTTGTTT--------------CTT-AATAACAAC.................................................................................................................................................	29	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................C-------------------------TGGTATTCTTGTTGTTT--------------CTT-AATAAC....................................................................................................................................................	27	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................TTCTTGTTGTTT--------------CTT-AATAACAA..................................................................................................................................................	23	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................TTCTTGTTGTTT--------------CTT-AATAACA...................................................................................................................................................	22	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................TTCTTGTTGTTT--------------CTT-AATAAC....................................................................................................................................................	21	17	0.06	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

CTTAATTTCT--------------------------CTGTTGGTT-------TTCAGGCACTTTATT--------------TCTTCTCTATAT-------------------------TGATATTCTTGCTGTTT--------------CTT-TATAACAACTCTTTCAGCTTGT-----TTTAACTCTTTTACTGAAAG-----------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TAAACTGATAGGCTTGGA--AATAAATTTTTT----TAATTGGTT-------CTGAAT--TTCGAA-TTAAATTTTATCAAAATCGAAAAAAT-------------------------T---------------ATATCTTTCGTGTTTTTTTCACATATAACCTTTTAGCTTG---------------------------------------------------GAAATAACATTTTTTAAAT---------------------------TTTTATGAA-------CTTAGAAAAAGGGTCTACAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TATAAGCTTCGGCTGGCCGAAGGTAGCTTCCTTTCTTGTTTTA-TTTTCA---------ATTTGTA-TGTATTTAAT---------GTGTTTTTATATGTTTTATATTTTAAATGTTTTATTCTCCTTAGTATTC--------------TT--CATAATCGCC----TACCT-------------------T------------------------------------------------------------ATGGGAATGTTTTTCTACTCGCTGCCAATATTTTTGATACAAGCATTTCTGGGAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TATTAACTTCGGCTTGCCGAAGTTTGCTTCCTTTCTTGTTTTT-TATTAA---------ATTTTAACTGTTAACAAC---------AAACAATTAAATGTTTAGTATAATTTAAG----------------------------------TTT-TATCAAAATAACTTC-----AT----TT----------T------------------------------------------------------------ATTAAGTTGTTTTTAAAAAGGATGTAAACTCAATATAAACAAAC---------AT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TATAAACTTCGGCTTGCCGAAGTTTGCTTCCTTTCTTGTTTTT-AGTTAATTCCAAAG--TTAGTA-GGTATTTTAGAAAGGACCAGAAGAAC-------------------------T---------------ATATTTTTTGAATA-TTT-GATAATAGTATT-TT-----AT-------T------------AA----------------------------CAAGTAGTATTTTTCCGAAA-------------------------CTTCCATAAATAC----------------------CT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TATAAGCTTCGGCTTGCCGAACCCAACTTCCTTTCTTGTTTTA-T-------TTAAAGGATTTGAAT--------------TTTCGGTTAAAT-------------------------CGTTCGTATTTTTAACT--------------T-----------------------A---------------------------------------------------TTAATGGTATCTATCGAATTCCTATTTAATTTAT-------------------------------------TTTTATTGAAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTTAATTTCT--------------------------CTGTTGGTT-------TTCAGGCACCTTATT--------------TCTTCTCTAAAT-------------------------TGATATTCTTGCTGTTT--------------CTT-TATAACCACCCTTTCAGCTTGT-----TTTAACT-TTTTAATGAAAG-----------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTTTATAT----------------------------------------------AAATTATTTAATA--------------TGTTCAATTAAT-------------------------TCAATTTAAAAAAATTTTAATTTT---------T-ATTTATACAAGTTAT-----GTAATTAGTT---------------------------------------------------------------------------------------------------------------------------A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TTAAAATTAT--------------------------TTA-------------------------CAT--------------TATTGAATAATT-------------------------T--TAATTTCTTAATTT--------------CTT-AAGAATAATTTC-----------------------------------------------------------------------------------------------------------------------------------------TTAAT	Size	Hit Count	Total Norm	Total
No Reads

-9.6	-9.4	-9.0	-8.7

dsi_2289

node_59901:1443-1518 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads