ID:

dsi_2285

 Coordinate:

2r:5847086-5847151 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.0 -7.6 -7.6

Flybase annnotation

exon [2r_5846935_5847085_+]; CDS [2r_5846935_5847085_+]; CDS [2r_5847152_5847335_+]; exon [2r_5847152_5847335_+]; intron [2r_5847086_5847151_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------##################################################
CTGGTCAGATAAGTTCGGCAGAAGGCCCATCCTGCTATCCACGTTCACAGGTGAGAATGCCATATGAATACCTCATGATCTGGTGAACTCTATTAAGTATCTGATTTATTTCGTAGGCTATTTTATCAGCGCCATCATCCTGGTTGTTCTTACTCAAATAACGACT
**************************************************..(((...(((((((((.....)))))...))))...)))..........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
........ATAAGTTCGGCAGAAGGC............................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................TGAACTCTATTAAGTATC................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0
.......GATAAGTTCGGCAGAAGGC............................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................CTCATGATCTGGCGAACA............................................................................. 18 2 2 0.50 1 0 0 0 0 0 1 0
...........................................................................TGACCTGATGAACTCTATTA....................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0
...........................................................................TGATCTGATGAACTGTATTAA...................................................................... 21 2 2 0.50 1 0 0 0 1 0 0 0
.........TAACTTCGGGAGAAGGC............................................................................................................................................ 17 2 10 0.40 4 0 0 0 0 4 0 0
....................................................GAGAATGCCGTATGAGT................................................................................................. 17 2 5 0.20 1 0 0 0 0 0 0 1
.................................................................................................................TAGGCTATTGTATCA...................................... 15 1 6 0.17 1 0 0 0 1 0 0 0
.........................GCCATACTGCTATCCACTTT......................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 1
........ATAACTTCGGGAGAAGG............................................................................................................................................. 17 2 10 0.10 1 0 0 0 0 1 0 0
..........................CCATACTGCGATCCACTTTC........................................................................................................................ 20 3 14 0.07 1 0 0 0 0 1 0 0
...................................................................................................................................CTAGAATCCTGGTTGTTCT................ 19 3 15 0.07 1 0 0 0 0 1 0 0

Anti-sense strand reads

GACCAGTCTATTCAAGCCGTCTTCCGGGTAGGACGATAGGTGCAAGTGTCCACTCTTACGGTATACTTATGGAGTACTAGACCACTTGAGATAATTCATAGACTAAATAAAGCATCCGATAAAATAGTCGCGGTAGTAGGACCAACAAGAATGAGTTTATTGCTGA
**************************************************..(((...(((((((((.....)))))...))))...)))..........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
.....................................AGGTGCAAGTGTCCACTCTTACGGT........................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0
..........................GGTAGGACGATAGGTGCAAGT....................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................TATGGAGAACTAGAC.................................................................................... 15 1 5 1.00 5 5 0 0 0 0 0 0
....................................................................ATGGAGAACTAGACCA.................................................................................. 16 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................ACGAGAATGAGTTTA....... 15 1 16 0.56 9 1 4 0 3 1 0 0
....................................................................ATGGAGAACTAGACTACGTG.............................................................................. 20 3 3 0.33 1 1 0 0 0 0 0 0
....................................................................ATGGAGAACTAGACTAC................................................................................. 17 2 9 0.22 2 2 0 0 0 0 0 0
....................................................................ATGGAGAACTAGACC................................................................................... 15 1 5 0.20 1 0 0 0 0 1 0 0
....................................................................ATGGAGAACTAGACCACC................................................................................ 18 2 6 0.17 1 1 0 0 0 0 0 0
.................................................................................................................................GCGGTTGTAGGATCAACA................... 18 2 6 0.17 1 0 0 0 0 0 1 0
............................................................GTCTAGTTATGGAGAACTAG...................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0
......................TCCGGCTAGGACGAT................................................................................................................................. 15 1 6 0.17 1 1 0 0 0 0 0 0
....................................................................ATGGAGAACTAGACTACTAG.............................................................................. 20 3 7 0.14 1 1 0 0 0 0 0 0
.....................TTCCGGCTAGGACTACAGGT............................................................................................................................. 20 3 7 0.14 1 0 0 1 0 0 0 0
.........................................................ACTGTATACTAATGGAG............................................................................................ 17 2 8 0.13 1 1 0 0 0 0 0 0
...................................................................................................................................GGTTGTAGGACCAAC.................... 15 1 20 0.10 2 0 0 0 1 0 0 1
................................................................................................................................................ACGAGAATGAGTTTATG..... 17 2 20 0.05 1 0 0 0 1 0 0 0
....................................................................................................................................GTAGTAGGACGTACATGAA............... 19 3 20 0.05 1 0 0 0 0 0 1 0

Generated: 04/24/2015 at 01:17 AM