ID:

dsi_22817

 Coordinate:

2l:19565142-19565291 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.4 -9.0 -8.7 -8.7

Flybase annnotation

three_prime_UTR [2l_19564589_19565639_+]; exon [2l_19564270_19565639_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
TTGTCAGTACCTGAATTTGTTAATTGTTTTGTGGCTGTCTAATTTACGCAAACTAACCGACTAACACCTACACTAATTCTGGATTGGAAATCTACTAGCATGTAGCAGTGACCACAACTAAAACACTAACCAAAGTAGATCGTTGCTCAAAGTATTATGCACTCCAAATGATCCAACCCGCTACCTTGCTGATCCCACAGATTCGAAAGATTGGCTCGTCTACTGCAGCCTGTACATGCAGGACTATGAC
**********************************************************************..........((........((((((((..(((...(((.......)))...))))))......)))))......))******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 M053
female body
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
..............................................................................................................................TAACCAAAGTAGATCGTTGCT....................................................................................................... 21 0 1 4.00 4 0 2 1 0 0 0 1 0 0 0 0
................................................CAAACTAACCGACTGGCACCT..................................................................................................................................................................................... 21 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................CACTAATTCTGGATTGGAAAT............................................................................................................................................................... 21 0 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0
............................................................CTAACACCTACACTAATTCTGGATTG.................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AACCAAAGTAGATCGTTGCTCAAAGT................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TGGCTCGTCTACTGCAGCC.................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GCTCGTCTACTCCAGCCT................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................AATTCTGGATTGGAAATCTACTAGC....................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CCACAGATTCGAAAGATTGG.................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AAAACACTAACCAAAGTAGATCGTT.......................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AACCAAAGTAGATCGTTGCTC...................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................ATTCGAAAGATTGGCTCG................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AACCAAAGTAGGGCGTTGCTCAAAGT................................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTCGTCTACTGCAGCCTGC................. 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................AACACCTACACTAATTCTGGATGG.................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................AACCAAAGTAGATCGTTGCTCAAAG.................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................ACACTAATTCTGGATTGGA.................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................TAAACACTAACCAAAGTAGATCGTTGC........................................................................................................ 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................ACTAATTCTGGATTGGAAATC.............................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGGATTGGAAATCTACTAGCATGTAG................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................TGTTAATTGTTTTGTGGCT...................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................ACAGATTCGAAAGATTGGCTC................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................AAAGTAGATCGTTGCTCAAAGT................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GCTCGTCTACTGCAGCCT................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CACAGATTCGAAAGATTGGCT.................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................TAGCATGTAGCAGTGACCACAACTAAAAC.............................................................................................................................. 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGATTCGAAAGATTGGCT.................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............AATTTGTTAATTGTTTTGTGGCTGTC................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................GTAGCAGTGACCACAACT................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................TGACCAAAGTAGATCGTTGCTA...................................................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................CACAGATTCGAAAGATTGGCTC................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................TAAAGTAATTCTGGATTGG................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................GTTAATTGTTTTGTGGCTGTC................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................TTGTTAATTGTTTTGTGGCT...................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CACAGATTCGAAAGATTGGCTT................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................CTCCAAATGATCCAACCCGCT.................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................ACTAATTCTGGATTGGAAATCTACT.......................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CTACTGCAGCCTGTACATGC........... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ACTGCAGCCTGTACATGC........... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCCCACAGATTCGAAAGATTGGCTCGTC.............................. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................TTGTTAATTGTTTTGTGGCC...................................................................................................................................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
.....................AATTGGTTTGCGGCTGTCT.................................................................................................................................................................................................................. 19 2 4 0.50 2 0 1 1 0 0 0 0 0 0 0 0
.....................AATTGGTTTGCGGCTGTC................................................................................................................................................................................................................... 18 2 14 0.21 3 0 2 0 1 0 0 0 0 0 0 0
.....................AATTGGTTTTTGGCTGTCT.................................................................................................................................................................................................................. 19 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TAACTTGCTGATCTCACGG.................................................. 19 3 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0
...............................TGACTGTCTAATTTA............................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.................................................................................GATTCGAAATCTACTGG........................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AACAGTCATGGACTTAAACAATTAACAAAACACCGACAGATTAAATGCGTTTGATTGGCTGATTGTGGATGTGATTAAGACCTAACCTTTAGATGATCGTACATCGTCACTGGTGTTGATTTTGTGATTGGTTTCATCTAGCAACGAGTTTCATAATACGTGAGGTTTACTAGGTTGGGCGATGGAACGACTAGGGTGTCTAAGCTTTCTAACCGAGCAGATGACGTCGGACATGTACGTCCTGATACTG
*******************************************************************************************************..........((........((((((((..(((...(((.......)))...))))))......)))))......))********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M024
male body
...................................................................................................................................................................GGTTTACTAGGTTGGGCGATG.................................................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0
............................................................................................................................................................................GGTTGGGCGGTGGAACGACTA......................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................TGCAGATGACGTCGGGCATGT.............. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGTCTAAGCTTTCTAACCGAG................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................CGTCTAAGCTTTCTAACCGAG................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................TGATTGGCTGGTTGTGGATGT.................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................TCTAGCAACGAGTTTCATAAT............................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................ATGTGGAACGACTAGGGTGTCT................................................. 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................ACGGCTAGGGTGTCTAAGCTT........................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................GGGACGGCTAGGGTGTCTAA............................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0
..........................................................GTAATTGTGGATGTGATTA............................................................................................................................................................................. 19 2 2 0.50 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................TAGGTTGCGCGATGGAT............................................................... 17 2 6 0.17 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................TAGGTTGGGCAATGG................................................................. 15 1 6 0.17 1 0 0 0 0 1 0 0 0 0
...............................................................CGGGGATATGATTAAGAC......................................................................................................................................................................... 18 3 20 0.15 3 0 0 0 0 0 0 0 2 1
...............................................................................................................................................................................................................................ACGTCGGAGATGTAAGTTC........ 19 3 16 0.13 2 0 0 2 0 0 0 0 0 0
...............................................................................................................................TCGGATTCATCTAGCATCG........................................................................................................ 19 3 10 0.10 1 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................GCTTGGGCGTTGGAAC.............................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0
....................................................................................ACCTTGGGATGATCGT...................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................ATGGATCGACTAGTGCGT................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:19565092-19565341 + dsi_22817 TTGTCAGTACCTGAATTT-------GTTAAT-TGTTT-----------TGTGGC----------------------------------TGTCTAATTTA-CGCAA----------------ACTAACCGACT--------AAC-ACCTACACTAATTCTGGATTGGAAAT-CTACTAGCATGTAGC-----------AGTGACCACAACTAAA----------------------------------------------------------------------A-----------------------------CACTAA-CCAAAGTAG--ATCGTTGCTCAAAGTATTATG---CAC-TCC-AA-ATGATCCAACCC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCCTGTACATGCAGGACTATGAC
droSec2 scaffold_7:3685844-3686101 + TTGTCAGTACCTGAATTT-------GTTAAT-TGTTT-----------TGTGGC----------------------------------TGTCTAATTTA-CGCAA----------------ACTAACCGACT--------AAC-ACCTACACTAATTCTGGATTGGAAAT-CTACTAGCATGTAGC-----------AGTGACCACAACTAAAAC----AAC-------T---------------------------------------------------AAA-----------------------------CACTAA-CCAAAGTAG--ATCGTTGCTCAAAGTATTATG---CAA-TCC-AA-ATGATCCAACCC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCCTCTACTGCAGCCTGTACATGCAGGACTATGAC
dm3 chr2L:20073187-20073427 + TTGTCAGTACCTGAATTT-------GTTAAT-TG--------------------------------------------------------TCTAATTTA-CGCAA----------------ACTAACCAACT--------AAC-ACCTACACTTATTCTGGATTGGAAAT-CTACTAGCATGTAGC-----------AGTAACCACAACTAAA----------------------------------------------------------------------A-----------------------------CACTAA-ACAAAGTAGAGATCGTTGCTCAAAGTATTATG---CAA-TCC-AA-ATCATTCAACCC-----------------GCTACCTTG------CTGAT-TCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGTCTGTACATGCAGGACTATGAC
droEre2 scaffold_4845:4257211-4257454 - TTTTGAGTACCTGATTTT-------GTTAAT-TGTTT-----------TGTGGC----------------------------------TATCTAGTTTA-CGCAA----------------ACTAACAAATT--------AAC-ACCTACACTAATCCTGGATTGGAAAT-CTACTAGCTCCTACC-----------AGAAACCACAACTAAA----------------------------------------------------------------------A-----------------------------CACTAA-TCAAAGTAG--ATCGTTGCTCAAAGTATTATG---CCA-TTC-AA-ATGATCCAACCC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCTTGTACATGCAGGAC------
droYak3 2R:6537382-6537635 + TTGTCAGTACCTGACTTT-------GTAAAT-TGTTT-----------TGTGGC----------------------------------TATCTAGTTTA-CGCAA----------------ACTAACAAACT--------AAC-ACCTTTACTCATCCTGGATGGGAAAT-CTACTAGCTCCTACT-TACTACTGGTAGTAACCACAACTAAA----------------------------------------------------------------------A-----------------------------CACTAA-TCAAAGTAG--ATCGTTGTTCAAAGTATTATG---CCA-TTC-AA-ATGATCCAAACC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCTTGTACATGCAGGAC------
droEug1 scf7180000409752:1066780-1067056 + TTGTCAGTACCTGAATGTCTTATTTGTTTTT-T-CTT-----------TGTGGTT--------------------------ATTATTCTCTCTAATCTT-TGCAA----------------ACTAACAAACTAACAACCTAAC-ATCT--ACTAATTCTGGATTGAAAATGCTACTAACT---A--------TATAAACTAACCACAACTAACCC---C--C------AAGA-------------------------------------------------GTG-----------------------------CACTAA-TCAAAGTAG--ATCATTGCTCAAAGTATCATA---AAATTTCAAA-ATGATCCAAACC-----------------GCTAACTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCCTGTACATGCAGGAC------
droBia1 scf7180000302408:983151-983415 + TTGTCGGTACCTGAATGTTTTATTTGTTATT-TGTTT-----------TGTGGTA--------------------------AATGTTCTCTCTAATCTT-TGCAA----------------ACTCACAACCT--------AAC-ACCT--ACTAATTCTGGATTGAAAAG-CCA------TGTAAC-AACT------ACTAACCGCAACTAAACC---C----------AAA-------------------------------------------------GTA-----------------------------CACTAA-CCCAAGTAG--ATCGTTGCTCAAAGTATGATA---AAACTTC-AA-ATGATCCGAACC-----------------GCTACCTTG------CTGATCCCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCCTGTACATGCAGGAC------
droTak1 scf7180000415115:416649-416913 - TTGTCTGTACCTGAATGTTT-------TACT-TGTTT-----------TGTGGTT--------------------------AATGTTCTCTCTAACCTTGTGCAA----------------ACTCACAACCT--------AAACACCT--ACTAATTCTGGATTGAAACG-CTACTAATC--TACTAAACT------ACTAACCACAATTTAACC---C--C-------A-A------------------------------------------------GCTA-----------------------------CACTAA-TCAAAGTAG--AAGATTGCTCAAAGTATGATT---ACATTTC-AA-ATGATCCACAAC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCCTGTACATGCAGGAC------
droEle1 scf7180000491046:2892601-2892847 - TTGTCAGTACCTGAATGTTA-------CGTT-TCTTT-----------TGTGGCT--------------------------AATGTTCTCTCCAATCTT-TGCTT----------------GCTAACAACCT--------AAC-ACAC--ACTAATTCTTGATTAAAACG-CTACTA------------------------ATCACAACTAAACA---A--T-------AAA-------------------------------------------------CTA-----------------------------AACTAA-ACAAAGTAG--ATCATTGCTCGAAATATGATA---AAATTGC-AA-ATTATCCTAACC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCAAAAGATTGGCTCGACTACTGCAGTTTGTACATGCAGGAT------
droRho1 scf7180000780010:25495-25726 - TTGTCAGTACCTGAATGTTA-------AATT-TGATT-----------TGTGGTT--------------------------AATATTCTCTCCAATCTT-TGCGA----------------ACTAACAACTT--------AAC-ACAT--ACTAACTATGGATTAAAA----------------------------------------CTAAACC---C--T-------AAA-------------------------------------------------CCA-----------------------------TACTAA--CAAAGTAG--ATAATTGCTCAAAGTATAATAG--ACATATT-AA-ATGATCCTAACC-----------------GCTGCCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGTTTGTACATGCAGGAC------
droFic1 scf7180000454082:573089-573354 + TTGAAAGTACCTGAGTGTTT-------TACT-TGTTT-----------TGTGCTT--------------------------AATACTCTCTCTAATCTT-GGCAAACCAACAAACCAACAAACTAACAACCT--------AAC-AACT--ACTAATTCTCGATTAACACA-GCACT------TAAC-----ACT---ACT------AACTAAAAC----AAA-------TAA-------------------------------------------------GTA-----------------------------CACTAA-TCAAAGTAG--ATCGTTGCTCAAAGT-TGATA---CGT-TCC-AA-ATGATCCAAATC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGACTACTGCAGCCTGTACATGCAGGAC------
droKik1 scf7180000302382:919595-919747 + TACTAAC----AAG---------------------T-------------------------------------------------------------------------------------------------------------------------AT-GATTAA-------------------------------AATAACCCA-----------------------AAC-------------------------------------------------CCA-----------------------------CACTAA-TCACAGTAG--CTAGTTGCTCAAAGTATGATA---CAATTTC-----------AATCC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCAAAAGATTGGCTCATCTACTGCAGCCTGTATATGCAGGACCACGAC
droAna3 scaffold_12916:8738121-8738350 - TTGTCAGTACCTGAAAGTTA--------CGT-TGTTT-----------CGAGGTTCG------------------------AATGTTCTCTGTTATCTT-CACAA----------------CCTTACGACCC--------AAC-AACATTACTA-----------------------------------------------ACCA-AACTAACCAACTC--G-------T-A------------------------------------------------GTTG-----------------------------AACTAA-CCAAAGTAG--ATCTTTGCTCAAACTATAATA---CAATTTC-AA-GTGATTGAAATC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCCTGTACATGCAGGAT------
droBip1 scf7180000396535:1278725-1278961 - TTGTCGGTACCTGAATGTTA--------AGT-TGTTT-----------CGAGGTT--------------------------AATGTTCTCTGTTATCTT-C------------------------ACGACCT--------AAC-ACACTTACTAACTCTGGCCCGGG----CCACTAACC-----------------------AACCAATAAAGT----AAACTAACCCT-A------------------------------------------------GATG-----------------------------AACTAA-CCAAAGTAG--ATCTTTGCTCAAAGTTTAGTA---CGATATC-----------TTATC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCCTGTACATGCAGGAC------
dp5 4_group4:3588485-3588675 - CCG----TACCTGA---------------------TT-----------TGTAGC----------------------------------CTTCTA-----------------------------------------------AC--CCCTTACTAATCCTTAGCCAAATCA-TTACTAACA-----------------------CACGACTAA-----------------------------------------------------------------------C-----------------------------GACTAATCCGAAGTAG--AAGTTTGCTCAAAAAACCACAATATGTTTTC-----------AAAAT-----------------GCCATTTGC------CTGAATCCC--ACAGATACAAAAGATTGGCTTAACTACTGCAGACTATACCTGCAGCA---GGAT
droPer2 scaffold_10:2617530-2617720 - CCG----TACCTGA---------------------TT-----------TGTAGC----------------------------------CTTCTA-----------------------------------------------AC--CCCTTACTAATCCTTAGCCAAATCA-TTACTAACA-----------------------CACGACTAA-----------------------------------------------------------------------C-----------------------------GACTAATCCGAAGTAG--AAGTTTGCTCAAAAAACCACAATATGTTTTC-----------AAAAT-----------------GCCATTTGC------CTGAATCCC--ACAGATACAAAAGATTGGCTTAACTACTGCAGACTATACCTGCAGCA---GGAT
droWil2 scf2_1100000004884:690993-691243 + TACTAAGAATTTTCCTCTTGTTTTTGAGTTA-A-TTC-----------AGTC---CGACTGCCTTTTACTAAAAAAAAATTATTGTGCTCG-----------------------------------------------------------ACTAATCTTGGCT------------------------------------------------------------------------------------------------------------------------GAACTGATTTCTTAGTACTTACTCAATTTTTACTAA-CCAATCTAG--CATGTTGTATGTAGTTTCTCA---CAC-TGA-ATATTTACCTAATCT-----------------GCTAACTTGACAACGATGAT-CCCCTACAGATTCCAAAGATTGGCAAATCTATTGCAGCCTGTACATGCAGGACTAT---
droVir3 scaffold_12723:4604873-4604937 + TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------CTGAT-CCC--ACAGATTCGAAAGATTGGCACATCTACTGCAGCTTATACGTGCAGGATTACGAC
droMoj3 scaffold_6500:10571435-10571499 + TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------CTGAT-CCC--ACAGATTCGAAAGATTGGCACATCTATTGCAGCTTATACATGCAGGATTACGAC
droGri2 scaffold_15126:3559495-3559707 + TTCCCAT-A------TTT-------ATTTAATTTCTTGACTGCACTCATATGG--------------------------------------------TA-AGCAA----------------ACTAATC----------------------------------------------------------------------------CA-----------------------AACCTGTAAAAGATAACTATGCATCCCACTTTACTAATCCACTTACTTTCCGTTG-----------------------------GCCCAA-TCACA---------------------------------------A-AAGTTTCCAATTCCTACATTTAAATGCATATTTCATTG------CTGATCCCC--ACAGATTCGAAAGATTGGCATATCTACTGCAGCCTATACATGCA----------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTGTCAGTACCTGAATTT-------GTTAAT-TGTTT-----------TGTGGC----------------------------------TGTCTAATTTA-CGCAA----------------ACTAACCGACT--------AAC-ACCTACACTAATTCTGGATTGGAAAT-CTACTAGCATGTAGC-----------AGTGACCACAACTAAA----------------------------------------------------------------------A-----------------------------CACTAA-CCAAAGTAG--ATCGTTGCTCAAAGTATTATG---CAC-TCC-AA-ATGATCCAACCC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCCTGTACATGCAGGACTATGACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................TAA-CCAAAGTAG--ATCGTTGCT.......................................................................................................................................2114.00421000010000000000
.....................................................................................................................................................CACTAATTCTGGATTGGAAAT-................................................................................................................................................................................................................................................................................................................2112.00210000000000010000
..................................................................................................................................CT--------AAC-ACCTACACTAATTCTGGATTG......................................................................................................................................................................................................................................................................................................................2612.00200200000000000000
.............................................................................................................................................................................................................................................................................................................................AA-CCAAAGTAG--ATCGTTGCTCAAAGT.................................................................................................................................2612.00200200000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTCGTCTACTGCAGCC....................1911.00101000000000000000
.........................................................................................................................................................AATTCTGGATTGGAAAT-CTACTAGC........................................................................................................................................................................................................................................................................................................2511.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CC--ACAGATTCGAAAGATTGG....................................2011.00110000000000000000
..................................................................................................................................................................................................................AAA----------------------------------------------------------------------A-----------------------------CACTAA-CCAAAGTAG--ATCGTT..........................................................................................................................................2511.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................AA-CCAAAGTAG--ATCGTTGCTC......................................................................................................................................2111.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGAAAGATTGGCTCG................................1811.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGTCTACTGCAGCCTGC.................1911.00110000000000000000
.............................................................................................................................................................................................................................................................................................................................AA-CCAAAGTAG--ATCGTTGCTCAAAG..................................................................................................................................2511.00100100000000000000
....................................................................................................................................................ACACTAATTCTGGATTGGA....................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
......................................................................................................................................................ACTAATTCTGGATTGGAAAT-C...............................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.............................................................................................................................................................CTGGATTGGAAAT-CTACTAGCATGTAG..................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.................T-------GTTAAT-TGTTT-----------TGTGGC----------------------------------T..................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATTCGAAAGATTGGCTC.................................2111.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................AAAGTAG--ATCGTTGCTCAAAGT.................................................................................................................................2211.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTCTACTGCAGCCT...................1811.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................C--ACAGATTCGAAAGATTGGCT..................................2111.00110000000000000000
...............................................................................................................................................................................TAGCATGTAGC-----------AGTGACCACAACTAAA----------------------------------------------------------------------A-----------------------------C.................................................................................................................................................................2911.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCGAAAGATTGGCT..................................1811.00100010000000000000
.............AATTT-------GTTAAT-TGTTT-----------TGTGGC----------------------------------TGTC...............................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.....................................................................................................................................................................................GTAGC-----------AGTGACCACAACT.........................................................................................................................................................................................................................................................................1811.00100000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................C--ACAGATTCGAAAGATTGGCTC.................................2211.00100100000000000000
.........................GTTAAT-TGTTT-----------TGTGGC----------------------------------TGTC...............................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
................TT-------GTTAAT-TGTTT-----------TGTGGC----------------------------------T..................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................C--ACAGATTCGAAAGATTGGCTT.................................2211.00110000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................C-TCC-AA-ATGATCCAACCC-----------------GCT.............................................................................2111.00100000000001000000
......................................................................................................................................................ACTAATTCTGGATTGGAAAT-CTACT...........................................................................................................................................................................................................................................................................................................2511.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCAGCCTGTACATGC...........2011.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCAGCCTGTACATGC...........1811.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................T-CCC--ACAGATTCGAAAGATTGGCTCGTC..............................2811.00100000001000000000
................TT-------GTTAAT-TGTTT-----------TGTGGC----------------------------------C..................................................................................................................................................................................................................................................................................................................................................................................................2020.50100100000000000000
droSec2
TTGTCAGTACCTGAATTT-------GTTAAT-TGTTT-----------TGTGGC----------------------------------TGTCTAATTTA-CGCAA----------------ACTAACCGACT--------AAC-ACCTACACTAATTCTGGATTGGAAAT-CTACTAGCATGTAGC-----------AGTGACCACAACTAAAAC----AAC-------T---------------------------------------------------AAA-----------------------------CACTAA-CCAAAGTAG--ATCGTTGCTCAAAGTATTATG---CAA-TCC-AA-ATGATCCAACCC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCCTCTACTGCAGCCTGTACATGCAGGACTATGACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................C--ACAGATTCGAAAGATTGGCTT.................................2211.0011000
...................................................................................................................................................................................ATGTAGC-----------AGTGACCACAACTAAAAC----AAC-------......................................................................................................................................................................................................................................................2811.0011000
................................TGTTT-----------TGTGGC----------------------------------TGTCTAATTT.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..................................................................................................................................................................................................................................................................................................................................................................................................................................C--ACAGATTCGAAAGATTGGCTCCT...............................2411.0010010
............................AAT-TGTTT-----------TGTGGC----------------------------------TGTCT..............................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................TTG------CTGAT-CCC--ACAGATTCG.............................................2011.0011000
...................................................................................................................................................................TGGAAAT-CTACTAGCATGT....................................................................................................................................................................................................................................................................................................1911.0010010
dm3
TTGTCAGTACCTGAATTT-------GTTAAT-TG--------------------------------------------------------TCTAATTTA-CGCAA----------------ACTAACCAACT--------AAC-ACCTACACTTATTCTGGATTGGAAAT-CTACTAGCATGTAGC-----------AGTAACCACAACTAAA----------------------------------------------------------------------A-----------------------------CACTAA-ACAAAGTAGAGATCGTTGCTCAAAGTATTATG---CAA-TCC-AA-ATCATTCAACCC-----------------GCTACCTTG------CTGAT-TCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGTCTGTACATGCAGGACTATGACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................TA-CGCAA----------------ACTAACCAACT--------AA.............................................................................................................................................................................................................................................................................................................................................2018.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................C--ACAGATTCGAAAGATTGGCT..................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000210000000010
.........................................................................................................................................................................................................................................................................................................................CACTAA-ACAAAGTAGAGATCGTTGC........................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TTGGAAAT-CTACTAGCATGTAGC-----------......................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGAT-TCC--ACAGATTCGAAAGATTGGC...................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATTGGCTCGTCTACTG.........................1911.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................AGAGATCGTTGCTCAAAGT.................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................ACCAACT--------AAC-ACCTACACTTATT..............................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................C-ACCTACACTTATTCTGGATTGGAAAT-C...............................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGATTGGCTCGTCTACTGC........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................A-ACAAAGTAGAGATCGTTGCT.......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GAT-TCC--ACAGATTCGAAAGATTGGCT..................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TACCTTG------CTGAT-TCC--ACAGATTCGAAA..........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................G------CTGAT-TCC--ACAGATTCGAAAGATTGGC...................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CC--ACAGATTCGAAAGATTGGCTCGG...............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCGAAAGATTGGCTCGTCT.............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TGGAAAT-CTACTAGCATGT....................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TA-CGCAA----------------ACTAACCAACT--------AAC-...........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................T-TCC--ACAGATTCGAAAGATTG.....................................2111.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................AA-ACAAAGTAGAGATCGTTGC........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................AT-TCC--ACAGATTCGAAAGATTGGCTC.................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
............................................................................................................................................................TCTGGATTGGAAAT-CTACTAGCATG.....................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TG---CAA-TCC-AA-ATCATTCAACC..................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................AAAGTAGAGATCGTTGCTCAA....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................CTAA-ACAAAGTAGAGATCGTTGC........................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGAAAGATTGGCTCGT...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTCTGTACATGCAGGAC......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AA-TCC-AA-ATCATTCAACCC-----------------GC..............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................AACT--------AAC-ACCTACACTTATTCTGG..........................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................CTACACTTATTCTGGATTGGAAA..................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAAAGATTGGCTCGTCTACTGCAG......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................CAAAGTAGAGATCGTTGCTCA.....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGATTGGCTCGTCTACT..........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................TTCAACCC-----------------GCTACCTTG------CTGAT-TCC--ACAG..................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TTGGAAAT-CTACTAGCATGTA...................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................CATTCAACCC-----------------GCTACCTTG------CT...............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TTA-CGCAA----------------ACTAACCAACA--------C..............................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................AGTAGAGATCGTTGCTATC....................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTTTGAGTACCTGATTTT-------GTTAAT-TGTTT-----------TGTGGC----------------------------------TATCTAGTTTA-CGCAA----------------ACTAACAAATT--------AAC-ACCTACACTAATCCTGGATTGGAAAT-CTACTAGCTCCTACC-----------AGAAACCACAACTAAA----------------------------------------------------------------------A-----------------------------CACTAA-TCAAAGTAG--ATCGTTGCTCAAAGTATTATG---CCA-TTC-AA-ATGATCCAACCC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCTTGTACATGCAGGAC------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................ATT--------AAC-ACCTACACTAATCCTGGAC........................................................................................................................................................................................................................................................................................................................2511.0010100000
................................TGTTT-----------TGTGGC----------------------------------TATCTAGTTTA-CGCA...................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
...........................................................................................................................................................................................................................................................................................A-----------------------------CACTAA-TCAAAGTAG--ATCGT...........................................................................................................................................2111.0011000000
...TGAGTACCTGATTTT-------GTTAAT-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
............GATTTT-------GTTAAT-TGTTT-----------TGTGGC----------------------------------T..................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................AACCC-----------------GCTACCTTG------CTGAT-CCC--AC....................................................2411.0010100000
............GATTTT-------GTTAAT-TGTTT-----------TGTGGC----------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
.........................................................................................................................................................AATCCTGGATTGGAAAT-CTA.............................................................................................................................................................................................................................................................................................................2011.0010000100
.........................................................................................................................................................................................................................................................................................................................CACTAA-TCAAAGTAG--ATC.............................................................................................................................................1811.0010000001
.........................................................................................................................................................................................................................................................................................................................................................................C-AA-ATGATCCAACCC-----------------GCTACC..........................................................................2111.0011000000
................................................................................................................................................................................................................................................................................................................................................................................GATCCAACCC-----------------GCTACCTTG------CT...............................................................2111.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACTGCAGCTTGTACA..............1911.0010100000
............................AAT-TGTTT-----------TGTGGC----------------------------------TATCT..............................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
......................................................................................................................................................................................................GAAACCACAACTAAA----------------------------------------------------------------------A-----------------------------CACTAC-...........................................................................................................................................................2211.0011000000
...........................TAAT-TGTTT-----------TGTGGC----------------------------------TATCTAGT...........................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................ATGATCCAACCC-----------------GCTACCTTG------.................................................................2111.0011000000
droYak3
TTGTCAGTACCTGACTTT-------GTAAAT-TGTTT-----------TGTGGC----------------------------------TATCTAGTTTA-CGCAA----------------ACTAACAAACT--------AAC-ACCTTTACTCATCCTGGATGGGAAAT-CTACTAGCTCCTACT-TACTACTGGTAGTAACCACAACTAAA----------------------------------------------------------------------A-----------------------------CACTAA-TCAAAGTAG--ATCGTTGTTCAAAGTATTATG---CCA-TTC-AA-ATGATCCAAACC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCTTGTACATGCAGGAC------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................AAACC-----------------GCTACCTTG------CTGAT-...........................................................1911.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTGGCTCGTCTACT..........................1911.00100100000000
..........................................................................................................................................................ATCCTGGATGGGAAAT-CTACTAGCTCCT....................................................................................................................................................................................................................................................................................................2811.00100100000000
.............................................................................................................................................................................................................................................................................................................................AA-TCAAAGTAG--ATCGTTGTTC......................................................................................................................................2111.00101000000000
......................................................................................................................................................................................................GTAACCACAACTAAA----------------------------------------------------------------------A-----------------------------CACT..............................................................................................................................................................2011.00101000000000
.............................................................................................................................................................................................................................................................................................................................AA-TCAAAGTAG--ATCGTTGTT.......................................................................................................................................2011.00100000010000
...........................................................................................................................................................................CTACTAGCTCCTACT-TACTACTGGT......................................................................................................................................................................................................................................................................................2511.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................AACC-----------------GCTACCTTG------CTGAT-CC.........................................................2011.00101000000000
.....................................................................................................................................................................................................AGTAACCACAACTAAA----------------------------------------------------------------------A-----------------------------CACT..............................................................................................................................................................2111.00101000000000
....CAGTACCTGACTTT-------GTAAAT-TGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
........................................................................................TATCTAGTTTA-CGCAA----------------ACTAAC............................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.............................AT-TGTTT-----------TGTGGC----------------------------------TATCTA.............................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................G------CTGAT-CCC--ACAGATTCGAAAGATTG.....................................2611.00101000000000
........................................................................................................................................................................................CT-TACTACTGGTAGTAACC...............................................................................................................................................................................................................................................................................1911.00100100000000
.........................GTAAAT-TGTTT-----------TGTGGC----------------------------------C..................................................................................................................................................................................................................................................................................................................................................................................................1840.25100100000000
droEug1
TTGTCAGTACCTGAATGTCTTATTTGTTTTT-T-CTT-----------TGTGGTT--------------------------ATTATTCTCTCTAATCTT-TGCAA----------------ACTAACAAACTAACAACCTAAC-ATCT--ACTAATTCTGGATTGAAAATGCTACTAACT---A--------TATAAACTAACCACAACTAACCC---C--C------AAGA-------------------------------------------------GTG-----------------------------CACTAA-TCAAAGTAG--ATCATTGCTCAAAGTATCATA---AAATTTCAAA-ATGATCCAAACC-----------------GCTAACTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCCTGTACATGCAGGAC------SizeHit CountTotal NormTotal
No Reads
droBia1
TTGTCGGTACCTGAATGTTTTATTTGTTATT-TGTTT-----------TGTGGTA--------------------------AATGTTCTCTCTAATCTT-TGCAA----------------ACTCACAACCT--------AAC-ACCT--ACTAATTCTGGATTGAAAAG-CCA------TGTAAC-AACT------ACTAACCGCAACTAAACC---C----------AAA-------------------------------------------------GTA-----------------------------CACTAA-CCCAAGTAG--ATCGTTGCTCAAAGTATGATA---AAACTTC-AA-ATGATCCGAACC-----------------GCTACCTTG------CTGATCCCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCCTGTACATGCAGGAC------SizeHit CountTotal NormTotal
No Reads
droTak1
TTGTCTGTACCTGAATGTTT-------TACT-TGTTT-----------TGTGGTT--------------------------AATGTTCTCTCTAACCTTGTGCAA----------------ACTCACAACCT--------AAACACCT--ACTAATTCTGGATTGAAACG-CTACTAATC--TACTAAACT------ACTAACCACAATTTAACC---C--C-------A-A------------------------------------------------GCTA-----------------------------CACTAA-TCAAAGTAG--AAGATTGCTCAAAGTATGATT---ACATTTC-AA-ATGATCCACAAC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCCTGTACATGCAGGAC------SizeHit CountTotal NormTotal
No Reads
droEle1
TTGTCAGTACCTGAATGTTA-------CGTT-TCTTT-----------TGTGGCT--------------------------AATGTTCTCTCCAATCTT-TGCTT----------------GCTAACAACCT--------AAC-ACAC--ACTAATTCTTGATTAAAACG-CTACTA------------------------ATCACAACTAAACA---A--T-------AAA-------------------------------------------------CTA-----------------------------AACTAA-ACAAAGTAG--ATCATTGCTCGAAATATGATA---AAATTGC-AA-ATTATCCTAACC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCAAAAGATTGGCTCGACTACTGCAGTTTGTACATGCAGGAT------SizeHit CountTotal NormTotal
No Reads
droRho1
TTGTCAGTACCTGAATGTTA-------AATT-TGATT-----------TGTGGTT--------------------------AATATTCTCTCCAATCTT-TGCGA----------------ACTAACAACTT--------AAC-ACAT--ACTAACTATGGATTAAAA----------------------------------------CTAAACC---C--T-------AAA-------------------------------------------------CCA-----------------------------TACTAA--CAAAGTAG--ATAATTGCTCAAAGTATAATAG--ACATATT-AA-ATGATCCTAACC-----------------GCTGCCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGTTTGTACATGCAGGAC------SizeHit CountTotal NormTotal
No Reads
droFic1
TTGAAAGTACCTGAGTGTTT-------TACT-TGTTT-----------TGTGCTT--------------------------AATACTCTCTCTAATCTT-GGCAAACCAACAAACCAACAAACTAACAACCT--------AAC-AACT--ACTAATTCTCGATTAACACA-GCACT------TAAC-----ACT---ACT------AACTAAAAC----AAA-------TAA-------------------------------------------------GTA-----------------------------CACTAA-TCAAAGTAG--ATCGTTGCTCAAAGT-TGATA---CGT-TCC-AA-ATGATCCAAATC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGACTACTGCAGCCTGTACATGCAGGAC------SizeHit CountTotal NormTotal
No Reads
droKik1
TACTAAC----AAG---------------------T-------------------------------------------------------------------------------------------------------------------------AT-GATTAA-------------------------------AATAACCCA-----------------------AAC-------------------------------------------------CCA-----------------------------CACTAA-TCACAGTAG--CTAGTTGCTCAAAGTATGATA---CAATTTC-----------AATCC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCAAAAGATTGGCTCATCTACTGCAGCCTGTATATGCAGGACCACGACSizeHit CountTotal NormTotal
No Reads
droAna3
TTGTCAGTACCTGAAAGTTA--------CGT-TGTTT-----------CGAGGTTCG------------------------AATGTTCTCTGTTATCTT-CACAA----------------CCTTACGACCC--------AAC-AACATTACTA-----------------------------------------------ACCA-AACTAACCAACTC--G-------T-A------------------------------------------------GTTG-----------------------------AACTAA-CCAAAGTAG--ATCTTTGCTCAAACTATAATA---CAATTTC-AA-GTGATTGAAATC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCCTGTACATGCAGGAT------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCGAAAGATTGGCTCGTC..............................2212.002200000
...........................................................................................GTTATCTT-CACAA----------------CCTTACGACC........................................................................................................................................................................................................................................................................................................................................................2311.001010000
.............................GT-TGTTT-----------CGAGGTTCG------------------------AAT.......................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................ATC-----------------GCTACCTTG------CTGAT-CCC--ACAG..................................................2411.001100000
.............................................................................................................................................................................................................................G-------T-A------------------------------------------------GTTG-----------------------------AACTAA-CCAAAGTAG--ATCTT...........................................................................................................................................2711.001010000
........................................................................................................................................................................................................................................................................................................................................................................TC-AA-GTGATTGAAATC-----------------GCTACCTTG------CT...............................................................2711.001010000
droBip1
TTGTCGGTACCTGAATGTTA--------AGT-TGTTT-----------CGAGGTT--------------------------AATGTTCTCTGTTATCTT-C------------------------ACGACCT--------AAC-ACACTTACTAACTCTGGCCCGGG----CCACTAACC-----------------------AACCAATAAAGT----AAACTAACCCT-A------------------------------------------------GATG-----------------------------AACTAA-CCAAAGTAG--ATCTTTGCTCAAAGTTTAGTA---CGATATC-----------TTATC-----------------GCTACCTTG------CTGAT-CCC--ACAGATTCGAAAGATTGGCTCGTCTACTGCAGCCTGTACATGCAGGAC------SizeHit CountTotal NormTotal
No Reads
dp5
CCG----TACCTGA---------------------TT-----------TGTAGC----------------------------------CTTCTA-----------------------------------------------AC--CCCTTACTAATCCTTAGCCAAATCA-TTACTAACA-----------------------CACGACTAA-----------------------------------------------------------------------C-----------------------------GACTAATCCGAAGTAG--AAGTTTGCTCAAAAAACCACAATATGTTTTC-----------AAAAT-----------------GCCATTTGC------CTGAATCCC--ACAGATACAAAAGATTGGCTTAACTACTGCAGACTATACCTGCAGCA---GGATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................CCC--ACAGATACAAAAGATTGGC...................................2211.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GATACAAAAGATTGGCTTAACTACTGC........................2711.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTGGCTTAACTACTGCA.......................2211.0010100000000
.............................................................................................................................................................................ACTAACA-----------------------CACGACTAA-----------------------------------------------------------------------C-----------------------------GACT..............................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................CTAACA-----------------------CACGACTAA-----------------------------------------------------------------------C-----------------------------GACTA.............................................................................................................................................................2111.0010100000000
droPer2
CCG----TACCTGA---------------------TT-----------TGTAGC----------------------------------CTTCTA-----------------------------------------------AC--CCCTTACTAATCCTTAGCCAAATCA-TTACTAACA-----------------------CACGACTAA-----------------------------------------------------------------------C-----------------------------GACTAATCCGAAGTAG--AAGTTTGCTCAAAAAACCACAATATGTTTTC-----------AAAAT-----------------GCCATTTGC------CTGAATCCC--ACAGATACAAAAGATTGGCTTAACTACTGCAGACTATACCTGCAGCA---GGATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTATACCTGCAGCA---G...1811.001010000
......................................................................................................................................................................ATCA-TTACTAACA-----------------------CACGACTG........................................................................................................................................................................................................................................................................2111.001010000
droWil2
TACTAAGAATTTTCCTCTTGTTTTTGAGTTA-A-TTC-----------AGTC---CGACTGCCTTTTACTAAAAAAAAATTATTGTGCTCG-----------------------------------------------------------ACTAATCTTGGCT------------------------------------------------------------------------------------------------------------------------GAACTGATTTCTTAGTACTTACTCAATTTTTACTAA-CCAATCTAG--CATGTTGTATGTAGTTTCTCA---CAC-TGA-ATATTTACCTAATCT-----------------GCTAACTTGACAACGATGAT-CCCCTACAGATTCCAAAGATTGGCAAATCTATTGCAGCCTGTACATGCAGGACTAT---SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................AGTTA-A-TTC-----------AGTC---CGACTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
..............................................................................ATTATTGTGCTCG-----------------------------------------------------------ACTAATCT.............................................................................................................................................................................................................................................................................................................................2111.00100010
droVir3
TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------CTGAT-CCC--ACAGATTCGAAAGATTGGCACATCTACTGCAGCTTATACGTGCAGGATTACGACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................CC--ACAGATTCGAAAGATTGGC...................................2112.002001000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTTATACGTGCAGGAT......2112.002001000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCACATCTACTGCAGCTT...................2112.002001000000000000000000000000000000000001000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGAT-CCC--ACAGATTCGAAAGA........................................2111.001000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGCAGCTTATACGTGCAGGA.......2311.001000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGAAAGATTGGCACATCTA............................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACGTGCAGGATTACGA.2011.001000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACATCTACTGCAGCTTATA................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAAAGATTGGCACATCT.............................2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATTCGAAAGATTGGCACA................................2111.001000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTATACGTGCAGGATTAC...2111.001000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCACATCTACTGCAGCT....................2111.001000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGCACATCTACTGCAGC.....................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGCTTATACGTGCAGGA.......2111.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATTCGAAAGATTGGCAC.................................2111.001000001000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTGGCACATCTACTGCAG......................2111.001000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGCAGCTTATACGTGCA..........2111.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G------CTGAT-CCC--ACAGATTCGAAAGATTGGCACATCTATTGCAGCTTATACATGCAGGATTACGACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTCCCAT-A------TTT-------ATTTAATTTCTTGACTGCACTCATATGG--------------------------------------------TA-AGCAA----------------ACTAATC----------------------------------------------------------------------------CA-----------------------AACCTGTAAAAGATAACTATGCATCCCACTTTACTAATCCACTTACTTTCCGTTG-----------------------------GCCCAA-TCACA---------------------------------------A-AAGTTTCCAATTCCTACATTTAAATGCATATTTCATTG------CTGATCCCC--ACAGATTCGAAAGATTGGCATATCTACTGCAGCCTATACATGCA----------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATTG------CTGATCCCC--ACA...................................................2111.00110
.........................ATTTAATTTCTTGACTGCACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATTGGCATATCTACTGC........................2111.00110
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATTCGAAAGATTGGCATT................................2211.00110

Generated: 05/19/2015 at 01:22 AM