ID:

dsi_22797

 Coordinate:

2r:5609560-5609709 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.2 -29.7 -29.7

Flybase annnotation

exon [2r_5608977_5609559_-]; CDS [2r_5608977_5609559_-]; intron [2r_5609560_5609873_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTGCCCACTCTCACTTTCACCATCGGCTGGGGGGGCTAGTGTTACAGTCCAATGGTGATCAATAGATTTCCAATCTAAGTCGGCCAGTCTGTGTAATATCGATTCTAAATGATCATTGTTTGTTTCGAGCGCGCCGAAAGGATGCATTAATTCGAATCGTACTTGCTCTGAGGTCAAATGTTTTTCGTTTGTTTATCAGCCTGCGCCTGCACACCCAGAACGATGGCGAGATACTGCTGGACTACTCGA
**************************************************...(((((((...((((((...)))))).))).))))......((((...((((((.((.((((((((.(((....((....))...))).)))).)))).)).))))))...)))).((((...((((((.....))))))....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
....................................................................................................................................................................................................................................GAGATACTGCTGGACTACTC.. 20 0 1 13.00 13 6 7 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GAGATACTGCTGGACTACT... 19 0 1 6.00 6 3 3 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TGCGCCTGCACACCCAGAACGATGGC...................... 26 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TGCACACCCAGAACGATGGCGAGA.................. 24 0 1 3.00 3 0 0 0 0 0 2 0 0 1 0 0 0 0
................................................................................................................................................................................................................TGCACACCCAGAACGATGGCGAGATAC............... 27 0 1 3.00 3 0 0 0 0 0 0 2 0 0 1 0 0 0
...................................................................................................................................................................................................................................CGAGATACTGCTGGACTACTC.. 21 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CGAGATACTGCTGGACTACT... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GGCGAGATACTGCTGGACTACTCGA 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GCGAGATACTGCTGGACTACT... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................GAATCGTACTTGCTCTGAGGT........................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GATGGCGAGATACTGCTGGACTACT... 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AACGATGGCGAGATACTGCTGGACTACT... 28 0 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACGATGGCGAGATACTGCTGGACTACT... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GAACGATGGCGAGATACTGCTGGACC...... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................CCGAATCGTACTTGCTCTGAGGTCA......................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GAACGATGGCGAGATACTGCTGGA........ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................TGCTCTCTGGACAAATGTTTTT................................................................ 22 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACGATGGCGAGATACTGCTGGACTACG... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTGCACACCCAGAACGAT......................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................................................TGGCGAGATACTGCTGGACT...... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TGGCGAGATACTGCTGGACTACTCGA 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................CGCCTGCACACCCAGAACGATGGCG..................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................CTGCACACCCAGAACGATGGCGA.................... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................CACCCAGAACGATGGCGAGA.................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................GGCGAGATACTGCTGGACC...... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CTTCACACCCAGAACTGTGGCGA.................... 23 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................CACCCAGAACGATGGCGAGATACTGCAA.......... 28 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................AGAACGATGGCGAGATACTGCT........... 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................GCGAGATACTGCTGGACTAC.... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GAACGATGGCGAGATACTGCTG.......... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATGGCGAGATACTGCTGGACTAC.... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GATACTGCTGGACTACTCGA 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................GAAGGGATGCATTTATTAGA.............................................................................................. 20 3 6 0.33 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................TCGAGCGCCCCGCAAGG............................................................................................................ 17 2 7 0.29 2 0 0 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................GTTTTTCGTTTGTTAATCAA.................................................. 20 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................TCGATTCTTAATGAGGATTG................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................TGGGGGCTAGCGTTAC............................................................................................................................................................................................................ 16 2 10 0.10 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................GCGGTGGCGAGATGCTGCTGG......... 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................GTTCCAATCCAAGTCGG...................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................TTCGAATCTAAGTCGGGGA................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................TCTGTTTAACAGCCTGC............................................. 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

AAACGGGTGAGAGTGAAAGTGGTAGCCGACCCCCCCGATCACAATGTCAGGTTACCACTAGTTATCTAAAGGTTAGATTCAGCCGGTCAGACACATTATAGCTAAGATTTACTAGTAACAAACAAAGCTCGCGCGGCTTTCCTACGTAATTAAGCTTAGCATGAACGAGACTCCAGTTTACAAAAAGCAAACAAATAGTCGGACGCGGACGTGTGGGTCTTGCTACCGCTCTATGACGACCTGATGAGCT
**************************************************...(((((((...((((((...)))))).))).))))......((((...((((((.((.((((((((.(((....((....))...))).)))).)))).)).))))))...)))).((((...((((((.....))))))....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
 O002
Head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
..............................................................................................................................................................GGATGAACTAGGCTCCAGTTT....................................................................... 21 3 1 3.00 3 3 0 0 0 0 0 0 0
................................................................................................................................................................ATGGACTAGGCTCCAGTTT....................................................................... 19 3 13 2.92 38 8 23 0 0 0 7 0 0
....................................................................................................................................................................................................................GTGGGTCTTGCTACCGCT.................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................GTTTACAAAAAGCAAACA......................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................GGATGGACTAGACTCCAGTT........................................................................ 20 3 4 0.75 3 2 1 0 0 0 0 0 0
.........................................................CAGGTTTTCTAAAGGTTAGA............................................................................................................................................................................. 20 3 16 0.63 10 0 0 1 0 8 0 0 1
............................................................................................................................................................................................................TCGGACGAATGGGTCTTGCT.......................... 20 3 6 0.17 1 0 0 0 0 0 0 1 0
..................................................................................................................................................................GGACTAGACTCCAGTT........................................................................ 16 2 20 0.15 3 2 1 0 0 0 0 0 0
.........................................................CGAGTTTTCTAAAGGTTAGAA............................................................................................................................................................................ 21 3 8 0.13 1 0 0 0 0 1 0 0 0
................................................................................................................................................................ATGAACTAGGCTCCAGT......................................................................... 17 2 9 0.11 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................GCTAAGAAATAGTCGGAC.............................................. 18 2 10 0.10 1 0 0 0 0 0 1 0 0
.........................................................CTGGTTTTCTAAAGGTTA............................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................TGGACTAGACTCCAGTT........................................................................ 17 2 13 0.08 1 0 1 0 0 0 0 0 0
...............................................................................................................................ACCGCGCGGCTTTCCTA.......................................................................................................... 17 2 16 0.06 1 1 0 0 0 0 0 0 0
...........................................................GGTTTTCTAAAGGTTAGA............................................................................................................................................................................. 18 2 16 0.06 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................ACGAGACTCCAGCATA...................................................................... 16 2 17 0.06 1 0 0 0 0 0 1 0 0
....................................................................AAGGTTAAATTCAGC....................................................................................................................................................................... 15 1 18 0.06 1 0 1 0 0 0 0 0 0
...........................................................GGTTATCTAAAGGTT................................................................................................................................................................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0
............................ACCCCCGAGATCACAA.............................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 1 0

Generated: 04/23/2015 at 07:09 PM