ID:

dsi_22782

 Coordinate:

3l:7991892-7992041 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7992042_7992200_+]; exon [3l_7992042_7992200_+]; intron [3l_7991331_7992041_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCAGCCCAGATCAAAGTATCTTTTTTTGTACAGGACTTAGGAATTTTTGATTTTTTTTCTATTTCTCGTGTGGCACTTGACATTTATATATTTTTCTTTTCTTTCATTTTGCGAATCCACCAAACACGTACCAACCAACCACCTCAACAACAACAACCACAACTACTCAACCACTCACCATATCTACTCTCTCATGCAAGTTACTCGTTTTTTAGATTCTTGAGCAAAACGGTCACCAGCTACCTGCCCA
**************************************************................(((((((...(((.((...........................))))).....))..)))))........................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
.........................TTGTACAGGACTTAGG................................................................................................................................................................................................................. 16 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................................................AGATTCTTGAGCAAAACGG.................. 19 0 1 1.00 1 0 1 0 0
.....................................................................................................TTTCACTTTGCGAATCCTC.................................................................................................................................. 19 2 2 0.50 1 0 0 1 0
................................GGATTTATGAATTTTTGATT...................................................................................................................................................................................................... 20 2 8 0.13 1 0 0 0 1
....................................TTATGAATTTTTGATT...................................................................................................................................................................................................... 16 1 20 0.05 1 1 0 0 0

Anti-sense strand reads

GGTCGGGTCTAGTTTCATAGAAAAAAACATGTCCTGAATCCTTAAAAACTAAAAAAAAGATAAAGAGCACACCGTGAACTGTAAATATATAAAAAGAAAAGAAAGTAAAACGCTTAGGTGGTTTGTGCATGGTTGGTTGGTGGAGTTGTTGTTGTTGGTGTTGATGAGTTGGTGAGTGGTATAGATGAGAGAGTACGTTCAATGAGCAAAAAATCTAAGAACTCGTTTTGCCAGTGGTCGATGGACGGGT
**************************************************................(((((((...(((.((...........................))))).....))..)))))........................................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
.............................................................................................................................................................................GAGTGGTATAGATGAGAGAGT........................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..TCGGGTCTAGTTTCATAGAAG................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................TAACTGTTATAGATGAGAGAGT........................................................ 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................................................................................AAGTTAAAGGCTTAGGTGGTT............................................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0 0 0
..........................................................................................................AAAAGGCTTAGGTGGTTA.............................................................................................................................. 18 2 7 0.29 2 1 0 0 0 0 0 1 0 0
..................................................AAAAAAAGGATAAAGGGCAC.................................................................................................................................................................................... 20 2 5 0.20 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TATAGATCAAAGAGTACG..................................................... 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0
............................................AAAACTAGCAAAAAGATAAA.......................................................................................................................................................................................... 20 2 8 0.13 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................TGAATGTTATAGATGAGAAAG......................................................... 21 3 8 0.13 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................CAAGGTTGGATGATGGAGT........................................................................................................ 19 3 10 0.10 1 0 0 1 0 0 0 0 0 0
......................AAAAAAATGTCCTGAACC.................................................................................................................................................................................................................. 18 2 13 0.08 1 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................GAGTTGGTGAGTGTTGTGGA................................................................. 20 3 13 0.08 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................GAGTTGGTGAATGTTGTAGA................................................................. 20 3 16 0.06 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................TCTAAGAAGTCGTTT...................... 15 1 18 0.06 1 0 0 0 1 0 0 0 0 0
................................................................................................................................AGGGTTGGATGATGGAGT........................................................................................................ 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................ACGAGTTGGTGAATGG....................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................CTAAAAATTTAAGAACTC.......................... 18 2 20 0.05 1 0 0 0 0 1 0 0 0 0

Generated: 04/24/2015 at 10:35 AM