dsi_22752

exon [2r_14020933_14021702_+]; CDS [2r_14020933_14021495_+]; exon [2r_14020575_14020872_+]; CDS [2r_14020575_14020872_+]; intron [2r_14020873_14020932_+]

##################################################------------------------------------------------------------################################################## GGGCGGCGAATTCTGGACGGATACTGCGATTGCTTTTATGCAGGGAGGAGGTGCGTTTGCTTGGTGTCATTAGAGAAATTCGAAATTACCTGGATCTATATATTTTATAGGAATCCGTGGCTCCGTCGATAAGAAGGCTGATGGAGTCATCAATGGCGCC ************************************************.....((.....(((((...(((....(((((........)))))))).)))))....))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M025 embryo	M053 female body	SRR902009 testis	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	M023 head	SRR618934 dsim w501 ovaries
....GGCGAATTCTGGACGGATACTGC.....................................................................................................................................	23	0	1	6.00	6	3	2	1	0	0	0	0	0	0
............................................................................................................................GTCGATAAGAAGGCTGATGGAGTC............	24	0	1	4.00	4	0	4	0	0	0	0	0	0	0
..............................................................................................................................CGATAAGAAGGCTGATGGAGTC............	22	0	1	3.00	3	2	0	1	0	0	0	0	0	0
....GGCGAATTCTGGACGGATAC........................................................................................................................................	20	0	1	2.00	2	0	2	0	0	0	0	0	0	0
..............................................................................................................................CGATAAGAAGGCTGATGGA...............	19	0	1	2.00	2	0	1	1	0	0	0	0	0	0
..................................................................................................................................AAGAAGGCTGATGGAGTC............	18	0	1	2.00	2	1	0	1	0	0	0	0	0	0
..............................................................................................................................CGATAAGAAGGCTGATGGAGT.............	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..............................................................................................................................CGATAAGAAGGCTGATGGAGTCATCAAT......	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..GCGGCGAATTCTGGACGGATACTGC.....................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0
...........TCTGGACGGATACTGCAATTGCTTT............................................................................................................................	25	1	1	1.00	1	0	0	0	0	0	1	0	0	0
...........................................................................................................................CGTCGATAAGAAGGCTGATGGA...............	22	0	1	1.00	1	0	0	1	0	0	0	0	0	0
................................................................................................................ATCCGTGGCTCCGTCGATAAGAAGG.......................	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0
............................................................................................................................GTCGATAAGAAGGCTGATGGG...............	21	1	1	1.00	1	1	0	0	0	0	0	0	0	0
....GGCGAATTCTGGACGGATACTG......................................................................................................................................	22	0	1	1.00	1	0	0	0	1	0	0	0	0	0
..GCGGCGAATTCTGGGCGGATACTGC.....................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0	0	0	0	0
...........................GATTGCTTTTATGCAGGGAGGAGGA............................................................................................................	25	1	1	1.00	1	0	0	1	0	0	0	0	0	0
.GGCGGCGAATTCTGGACGGAT..........................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0
............CTGGACGGATACTGCGATTGC...............................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..GCGGCGAATTCTGGACGGATACTG......................................................................................................................................	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0
......CGAATTCTGGACGGATACTGCG....................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0
....GGCGAATTCTGGACGGAT..........................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0
.........................................................................................................................TCCGTCGATAAGAAGGCTGAT..................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..............GGACGGATACTGCGATTG................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0
....GGCGAATTCTGGACGGATACTGCG....................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................GATAAGAAGGCTGATGGA...............	18	0	1	1.00	1	0	0	0	0	1	0	0	0	0
............................................................................................................................GTCGATAAGAAGGCTGATGGA...............	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0
............................................................................................................................GTCGAGAAGAAGGCTGATGGA...............	21	1	1	1.00	1	0	0	1	0	0	0	0	0	0
.....GCGAATTCTGGACGGATACTGC.....................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0
................................................................................................................ATCCGTGGCTCCGTCGATAA............................	20	0	1	1.00	1	0	0	0	0	1	0	0	0	0
......CGAATTCTGGACGGATACTGC.....................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
............................................................................................................AGGAATCCGTCTCTCTGTC.................................	19	3	20	0.25	5	2	0	1	0	0	0	0	2	0
.........................................................TGCTTGGTGGCAATAGAGAGA..................................................................................	21	3	8	0.13	1	0	0	0	0	0	0	1	0	0
..................................................................................................................................AAGAACTCTGATGGAGT.............	17	2	16	0.06	1	0	0	0	0	0	1	0	0	0
...............................................GAGGTGCGTTCGCTT..................................................................................................	15	1	18	0.06	1	0	0	0	0	0	0	0	0	1

CCCGCCGCTTAAGACCTGCCTATGACGCTAACGAAAATACGTCCCTCCTCCACGCAAACGAACCACAGTAATCTCTTTAAGCTTTAATGGACCTAGATATATAAAATATCCTTAGGCACCGAGGCAGCTATTCTTCCGACTACCTCAGTAGTTACCGCGG ************************************************.....((.....(((((...(((....(((((........)))))))).)))))....))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	M024 male body	SRR618934 dsim w501 ovaries	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries
.......................................................................................................................CGAGGCAGCTATTCTTCCGAC....................	21	0	1	1.00	1	0	1	0	0	0
................................................................................................................TAGGCACCGAGGCAGCTATT............................	20	0	1	1.00	1	1	0	0	0	0
......................................................................................................................................TCCGACTACCTCAGTAGTTACC....	22	0	1	1.00	1	1	0	0	0	0
..............................................................................................................CTTAGGTACCGAGGAAGTTAT.............................	21	3	4	0.25	1	0	0	1	0	0
.......................................................................................................................CGATCCAGCTATTGTTCCGA.....................	20	3	4	0.25	1	0	0	0	1	0
..CGCCGCTTAACACTCGCCTAT.........................................................................................................................................	21	3	5	0.20	1	0	0	1	0	0
...................CTATGACGCTAGCGAA.............................................................................................................................	16	1	5	0.20	1	0	0	1	0	0
...................................AAGACGTCCTTCCTCCA............................................................................................................	17	2	20	0.05	1	0	0	0	0	1
....................................................................................................ATAAAATAGCCTTAGGGA..........................................	18	2	20	0.05	1	0	0	1	0	0
...................CAATGACGCTAGCGAA.............................................................................................................................	16	2	20	0.05	1	0	0	1	0	0
...........................................................................................................................GCAGCTGCTTTTCCGACTA..................	19	3	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:14020823-14020982 +	dsi_22752	GGGCGGCGAATTCTGGACGGATACTGCGATTG----CTTTTATGCAGGGAGGAGGTGCGTTTG-CTTGGTGTCATTAGAGA----AATT-------------C--------------GAAA----TTACC-----------TGGATCT-ATATA--TTTTATAGGAATCCGTGGCTCCGTCGATAAGAAGGCTGATGGAGTCATCA-ATGGCGCC
droSec2	scaffold_1:10866569-10866728 +		GGGCGGAGAATTCTGGACGGATACTGCGATTG----CTTTTATGCAGGGAGGAGGTGCGTTTG-CTTGGTGTCATTAGAGA----AATT-------------C--------------GAAA----TTACC-----------TGGATCT-ACATA--TTTTATAGGAATCCGTGGCTCCGTCGATAAGAAGGCTGATGGAGTCATCA-ATGGCGCC
dm3	chr2R:13368769-13368929 +		GGGCGGCGAATTCTGGACAGATACTGCGATTG----CTTTTATGCAGGGAGGAGGTGTGTTTTATTTGGTGTCATTAGAGA----AATT-------------C--------------GAAA----TTACG-----------TGGATCT-ACATA--TTTTATAGGAATCCGTGGCTCCGTCGATAAGAAGGATGATGGAGTCATCA-ATGGCGCC
droEre2	scaffold_4845:12486119-12486276 -		GGGTGGAGAATTCTGGACGGATGCTTCGATTG----CCTTTATGCAGGGAGGAGGTGCGTTTG-CTTGGTGTCATTAGAGA-----GTT-------------C--------------GAAA----TCATA-----------TGAATCT-A-CGT--CTATTCAGGAATCCGTGGATCCATCGATAAGACCGCAGATGGAATCATCA-ATGGGGCC
droYak3	2R:18095812-18095969 -		GGGCGGTGAATTCTGGACGGATACTGCGATTG----CCTTTATGCAGGGAGGAGGTGCGTTTG-CTTGGTGTCATTAGTGA-----TTT-------------C--------------GAAA----TTACC-----------TGAATCC-G-CGT--CTATTTAGGAATCCGTTCCTCCATCGATAAGAAGGCAGATGGTGTCATCA-ATGGGGCC
droEug1	scf7180000409672:1739653-1739807 -		GGGTGGAGAATTCTGGACGGATGCACCGATTG----CCTTTATGCAGGGAGGAGGTGGGTTCA-ATTAGCTTGATTAGAAA----GATC-------------A--------------AAAG----ATA------------CTGA---T-A-AAA--TCCTTTAGGAATTCGAGCCTCCGTTGAAAAGCAAGCCGATGGAGCCATCA-ATGGAGCC
droBia1	scf7180000301754:5621480-5621636 +		GGGCGGAGAGTTCTGGACAGATGCACCGATTG----CCTTTATGCAGGGCGGAGGTGGGTTGC-AG--GAGTGACCAGTTG-----TAT-------------G----------AAAA---C----AAG---------A--CTAAGCTT-G-AAT--CCCTTTAGGAATCCGCGCCTCCGTCGATAAGCAGGCGGATGGAGCCATCA-ATGGGGCC
droTak1	scf7180000415138:373693-373854 -		GGGTGGAGAATTCTGGACAGATGCACCAATTG----CCTTTATGCAGGGAGGAGGTGGGTTCA-ATCAGTAATA--TGTTG----GGAG-------------T--------TAAAAT---C----TAG---------ATATTAA-CTTGA-AAT--CCTTTTAGGGATTCGCGCTTCCGTCGATAAGCAGTCGGATGGAGCCATCA-ATGGGGCC
droEle1	scf7180000491214:912267-912413 -		GGACAGAAACTCTTGGACAGATGCACCCATAGGACTCATTAATGCAGGGGGTAAGTGATTGAG-TCTTGAGG-ATTAATGA-----TCT-------------T--------------TAAA----T---------------------------T--GGAATTAGCCATTAGAACTTCGGTTGAATCCGGGGAAACGGGAGCCATCA-CAGAGGCC
droRho1	scf7180000776786:79621-79780 +		GGGTGGGGAGTTCTGGACGGATGCATCTATCG----CCTTTATGCAGGGAGGAGGTGGGTTTCGCCCGGATTAGACAGAGC----AA-C-------------C--------------GAAC---GT-----------T--CTGACCTT-G-TATTCACTCTCAGGAATCCGCGGCTCTGTCGATAAGCAGGCGGATGGAGTCATCA-ATGGAGCC
droFic1	scf7180000453948:2083278-2083442 -		GGGTGGCGAGTTCTGGACGGACACCCCGATCG----CCCTAATGCAGGGAGGAGGTGGGTACT-CGAG------------C------------AGACCTTTCTATTAGAGAT--CA-ACTGAGAGT-----------A--ATGACCTT-G-AAC--TCCCCCAGGAATCCGCGCCTCTGTTGATAAGCAGGACGATGGAGCCATCA-ATGGGGCC
droKik1	scf7180000302385:869212-869371 -		GGGTGGCGATTACTGGACAGATGCATCCATTG----CCTTGATTCAGGGAGGCGGTGAGCTGT-TCGAAAGAAAAAATAATAACTGGTT------------------------------AA----CTACC-----------CTAATGT-A-ATC--TCCTTCAGCTATTCGGGCCTCTGTGGAGAAGGAAAACGATGGAGCCATTA-ACGGAGCC
droAna3	scaffold_13266:8865570-8865726 +		GGGCGGCGATTTCTGGACAGATGCTGCGATTG----CTTTCATGCAGGGAGGAGGTTGTATTT-CAA-GAAATATGAACTA-----TTG-------------A-----------AAA---A----TATA-----------TTTAAACC-A-TCT--CTTTTTAGGTATTCGCAGCTCCATTGAAAAACGATCTGATGGGTCCATAA-CCGACAAC
droBip1	scf7180000395028:7267-7423 +		GGGCGGCGATTTCTGGACTGATGCCGCCATTT----CTTTGATGCAGGGAGGAGGTTGTATTT-ATAA--ATATTTAAAGA-----CTT-------------A----------AAGA---A----TAT---------A--TTTAAACC-A-CAT--ATTTGTAGGTATTCGCAGCTCCATTGAAAAACGATCGGATGGATCTATAA-CCGACAAT
dp5	3:4827315-4827479 +		GGGCGGCGACTACTGGACCGATGCGGCAATCG----CAGTTATTGTGGGAGGCGGTTCGTAGG-ATGC-----T--CC----AATGCTCCATTACACCCATTT--------------GTTA----TC-CT-----------TGAGTTT-TTGCA--ACTTGCAGGCATACGCAGCTCGATCGAGAAGAAGTCCGACGGCTCGATCA-CCGACAGC
droPer2	scaffold_2:5021271-5021435 +		GGGCGGCGACTACTGGACCGATGCGGCAATCG----CAGTCATTGTGGGAGGCGGTTCGTAGG-ATGC-----T--CC----AATGCTCCATTACACCCATTT--------------GTTA----TCCT------------TGAGTTC-TTTCA--ACTTGCAGGCATACGCAGCTCGATCGAGAAGAAGTCCGACGGCTCGATCA-CCGACAGC
droWil2	scf2_1100000004954:4497340-4497501 -		CGGAGGGGAATACTGGACTGATGCTTCTATTG----CTCTACTTCAAGGCGGCGGTAGGTAGT-AT--GTGTCTTTAGTGT----CCCG-------------T--------------GTCT----TAT-T-----AATCGTTCCCCTC-C-CTT--CCTTCTAGGCATACGAGCCAGCATTGACAAAGATGCGGATGGCAATATTA-CTGGCAGC
droVir3	scaffold_12875:12799342-12799497 -	dvi_6558	GGGTGGCGATTACTGGACAGATGCTCCTATAG----CTCTGCTGCAAGGCGGCGGTAAGTCTG-ACAGCTT---TGAGTTG-----GAG-------------C--------C--AAT---CTAAGT-----------C--C--AAAGT-T-TTA--TTTTGTAGGCATTCGCAGCTCCATTGACAAAAATGCGAACGGTTCCATTA-CGGGCAGC
droMoj3	scaffold_6496:20064965-20065124 -		GGGCGGCGACTACTGGACGGATGCACCCATAG----CTCTGCTCCAAGGAGGTGGTAAGTTTG-ACAA-------TTGCAT----ATTT-------------T--------------AATA----TTCCCATGATA-T--ATGAAATG-T-TTC--TCTTTTAGGAATACGAGCATCCATTGACAAGAATTCAATTGGTTCGATTA-CTGGCAGC
droGri2	scaffold_15245:7572040-7572197 +		GGGCGGTGATTATTGGACAGACGCAGCGATTG----CTCTACATCAGGGTGGAGGTAAGGCTTATTAAATGTGCATGATAA----AA-T-------------T--------------GTA-----TAAAA-----------TGTTTC--T-CTT--TATTCCAGGCATACGTAGCTCAATTGAAAGGAAATCCGATGGCATTATCACACAGAGCG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GGGCGGCGAATTCTGGACGGATACTGCGATTG----CTTTTATGCAGGGAGGAGGTGCGTTTG-CTTGGTGTCATTAGAGA----AATT-------------C--------------GAAA----TTACC-----------TGGATCT-ATATA--TTTTATAGGAATCCGTGGCTCCGTCGATAAGAAGGCTGATGGAGTCATCA-ATGGCGCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....GGCGAATTCTGGACGGATACTGC............................................................................................................................................................................................	23	1	6.00	6	0	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................GTCGATAAGAAGGCTGATGGAGTC.............	24	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CGATAAGAAGGCTGATGGAGTC.............	22	1	3.00	3	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....GGCGAATTCTGGACGGATAC...............................................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CGATAAGAAGGCTGATGGA................	19	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................AAGAAGGCTGATGGAGTC.............	18	1	2.00	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CGATAAGAAGGCTGATGGAGT..............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CGATAAGAAGGCTGATGGAGTCATCA-AT......	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GCGGCGAATTCTGGACGGATACTGC............................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CGTCGATAAGAAGGCTGATGGA................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................ATCCGTGGCTCCGTCGATAAGAAGG........................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................GTCGATAAGAAGGCTGATGGG................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GGCGAATTCTGGACGGATACTG.............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................GATTG----CTTTTATGCAGGGAGGAGGA...............................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.GGCGGCGAATTCTGGACGGAT.................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CTGGACGGATACTGCGATTG----C..................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GCGGCGAATTCTGGACGGATACTG.............................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......CGAATTCTGGACGGATACTGCG...........................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GGCGAATTCTGGACGGAT.................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TCCGTCGATAAGAAGGCTGAT...................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GGACGGATACTGCGATTG----...................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....GGCGAATTCTGGACGGATACTGCG...........................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GATAAGAAGGCTGATGGA................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................GTCGATAAGAAGGCTGATGGA................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GCGAATTCTGGACGGATACTGC............................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................ATCCGTGGCTCCGTCGATAA.............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......CGAATTCTGGACGGATACTGC............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GGGCGGAGAATTCTGGACGGATACTGCGATTG----CTTTTATGCAGGGAGGAGGTGCGTTTG-CTTGGTGTCATTAGAGA----AATT-------------C--------------GAAA----TTACC-----------TGGATCT-ACATA--TTTTATAGGAATCCGTGGCTCCGTCGATAAGAAGGCTGATGGAGTCATCA-ATGGCGCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................CGATAAGAAGGCTGATGGA................	19	1	6.00	6	0	2	3	1
....................................................................................................................................................................................CGATAAGAAGGCTGATGGAGTC.............	22	1	2.00	2	0	1	1	0
.....................................................................................................................................................................................GATAAGAAGGCTGATGGA................	18	1	2.00	2	0	0	2	0
.....................................................................................................................................................................................GATAAGAAGGCTGATGGAGTCATC..........	24	1	2.00	2	0	1	1	0
.................................................................................................................................................................................CGTCGATAAGAAGGCTGATGGA................	22	1	2.00	2	0	0	2	0
..................................................................................................................................................................................GTCGATAAGAAGGCTGATGGA................	21	1	1.00	1	0	0	1	0
......................................................................................................................................................................................ATAAGAAGGCTGATGGAGTCAT...........	22	1	1.00	1	0	0	1	0
.........................................................................................................................................................................CGTGGCTCCGTCGATAAGAAGGCTGAT...................	27	1	1.00	1	0	0	1	0
.........ATTCTGGACGGATACTGC............................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.......GAATTCTGGACGGATACTGCG...........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.................................................................................................................................................................................CGTCGATAAGAAGGCTGATGG.................	21	1	1.00	1	0	0	1	0
.....GAGAATTCTGGACGGATACTGCGATTG----C..................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
.................................................................................................................................................................................CGTCGATAAGAAGGCTGATGGAG...............	23	1	1.00	1	0	0	1	0
..........................................................................................................................................................................GTGGCTCCGTCGATAAGAAGG........................	21	1	1.00	1	0	1	0	0
..................................................................................................................................................................................GTCGATAAGAAGGCTGATGGAGTC.............	24	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................TAAGAAGGCTGATGGAGTCATC..........	22	1	1.00	1	0	1	0	0
......AGAATTCTGGACGGATACTGC............................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
....GGAGAATTCTGGACGGATACTGCGATTG----...................................................................................................................................................................................	28	1	1.00	1	1	0	0	0
......................ACTGCGATTG----CTTTTATGCAGGGAGG...................................................................................................................................................................	26	1	1.00	1	0	0	1	0
......................................................................................................................................................................................ATAAGAAGGCTGATGGAGTC.............	20	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................AAGGCTGATGGAGTCATCA-ATGGCGC.	26	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................GATGGAGTCATCA-ATGGCG..	19	1	1.00	1	0	0	0	1
..................................................................................................................................................................................GTCGATAAGAAGGCTGATGGAGTCATC..........	27	1	1.00	1	1	0	0	0
...........................GATTG----CTTTTATGCAGGGAGGA..................................................................................................................................................................	22	1	1.00	1	0	1	0	0

dm3

GGGCGGCGAATTCTGGACAGATACTGCGATTG----CTTTTATGCAGGGAGGAGGTGTGTTTTATTTGGTGTCATTAGAGA----AATT-------------C--------------GAAA----TTACG-----------TGGATCT-ACATA--TTTTATAGGAATCCGTGGCTCCGTCGATAAGAAGGATGATGGAGTCATCA-ATGGCGCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................GTCGATAAGAAGGATGATGGA................	21	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CGATAAGAAGGATGATGGA................	19	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................GTCGATAAGAAGGATGATGGAGTC.............	24	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GATAAGAAGGATGATGGA................	18	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................CCGTCGATAAGAAGGATGATGGA................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CGTCGATAAGAAGGATGATGGA................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0	0	0
..................AGATACTGCGATTG----CTTTT..............................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GATAAGAAGGATGATGGAGTC.............	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	3	0	0	0	0	0	0	0	0
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.............TGGACAGATACTGCGATTG----CT.................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TTTGGTGTCATTAGAGA----A.................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................ATCCGTGGCTCCGTCGATAAGA...........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........TCTGGACAGATACTGCGAT.........................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........TTCTGGACAGATACTGAC...........................................................................................................................................................................................	18	4	0.75	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GCAGGGAGGAGGTGTGGA..........................................................................................................................................................	18	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................TAGAGA----AATT-------------C--------------GAAA----TTAGA-----------G.........................................................................	21	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CT-ACATA--TTTTATAGGTG................................................	18	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GGGTGGAGAATTCTGGACGGATGCTTCGATTG----CCTTTATGCAGGGAGGAGGTGCGTTTG-CTTGGTGTCATTAGAGA-----GTT-------------C--------------GAAA----TCATA-----------TGAATCT-A-CGT--CTATTCAGGAATCCGTGGATCCATCGATAAGACCGCAGATGGAATCATCA-ATGGGGCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.GGTGGAGAATTCTGGACGGATGCTT.............................................................................................................................................................................................	25	1	5.00	5	1	0	0	0	4	0	0
....GGAGAATTCTGGACGGATGCTTC............................................................................................................................................................................................	23	1	3.00	3	0	0	0	2	1	0	0
......................................................................................................................................................................ATCCGTGGATCCATCGAT...............................	18	1	2.00	2	0	0	0	0	0	2	0
..........................CGATTG----CCTTTATGCAGGGAGGA..................................................................................................................................................................	23	1	2.00	2	0	0	0	0	2	0	0
..........................CGATTG----CCTTTATGCAGGGAGGAGGA...............................................................................................................................................................	26	1	2.00	2	1	0	0	0	0	1	0
GGGTGGAGAATTCTGGACGGATGCTT.............................................................................................................................................................................................	26	1	2.00	2	1	0	0	0	1	0	0
..................GGATGCTTCGATTG----CCTTTATGCA.........................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
....................ATGCTTCGATTG----CCTTTATGCAGGGA.....................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................AAGACCGCAGATGGAATCATCA-ATG.....	25	1	1.00	1	0	0	0	0	1	0	0
............CTGGACGGATGCTTCGATTG----C..................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.........ATTCTGGACGGATGCTTCGATT........................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................ATAAGACCGCAGATGGAATC.............	20	1	1.00	1	0	0	0	0	0	1	0
..GTGGAGAATTCTGGACGGATG................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
....GGAGAATTCTGGACGGATGCTT.............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..........................CGATTG----CCTTTATGCAGGGAG....................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
..........................CGATTG----CCTTTATGCAGGGAGGAGG................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0
......................GCTTCGATTG----CCTTTATGCAGGGA.....................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................ATCCGTGGATCCATCGATAAGAC..........................	23	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................AATCCGTGGATCCATCGATAAGAC..........................	24	1	1.00	1	0	1	0	0	0	0	0
.........ATTCTGGACGGATGCTTCGATTG----CCTTT..............................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..GTGGAGAATTCTGGACGGATGCTT.............................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.GGTGGAGAATTCTGGACGGATGC...............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................GATAAGACCGCAGATGGAATC.............	21	1	1.00	1	0	0	0	0	1	0	0

droYak3

GGGCGGTGAATTCTGGACGGATACTGCGATTG----CCTTTATGCAGGGAGGAGGTGCGTTTG-CTTGGTGTCATTAGTGA-----TTT-------------C--------------GAAA----TTACC-----------TGAATCC-G-CGT--CTATTTAGGAATCCGTTCCTCCATCGATAAGAAGGCAGATGGTGTCATCA-ATGGGGCC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................................GAAGGCAGATGGTGTCATCA-ATGGGGCC	28	1	30.00	30	0	0	0	0	0	0	0	0	0	0	30
.................................................................................................................................................................................CATCGATAAGAAGGCAGATGGT................	22	1	9.00	9	0	2	0	0	0	0	7	0	0	0	0
..................................................................................................................................................................................ATCGATAAGAAGGCAGATGGT................	21	1	7.00	7	0	0	0	0	0	0	7	0	0	0	0
.......GAATTCTGGACGGATACTGC............................................................................................................................................................................................	20	1	5.00	5	0	0	0	0	0	0	5	0	0	0	0
....................................................................................................................................................................................CGATAAGAAGGCAGATGGT................	19	1	4.00	4	0	0	0	0	0	0	4	0	0	0	0
...........................GATTG----CCTTTATGCAGGGAGGA..................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	4	0	0	0	0
.......GAATTCTGGACGGATACTGCGATT........................................................................................................................................................................................	24	1	3.00	3	0	0	1	0	0	0	2	0	0	0	0
....GGTGAATTCTGGACGGATACTGCGATTG----C..................................................................................................................................................................................	29	1	3.00	3	1	0	0	0	0	0	2	0	0	0	0
...........................GATTG----CCTTTATGCAGGGAGGAG.................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.....................................CTTTATGCAGGGAGGAGGA...............................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.................................................................................................................................................................................CATCGATAAGAAGGCAGAT...................	19	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
........AATTCTGGACGGATACTGCGATTG----CCT................................................................................................................................................................................	27	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0
...........................GATTG----CCTTTATGCAGGGAGGAGGA...............................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
.............................TTG----CCTTTATGCAGGGAGGA..................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................TCCGTTCCTCCATCGATAA.............................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
....GGTGAATTCTGGACGGATACTGCGAT.........................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
....GGTGAATTCTGGACGGAT.................................................................................................................................................................................................	18	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0
....GGTGAATTCTGGACGGATACTGCG...........................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................CCATCGATAAGAAGGCAGATGGTGTC.............	26	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
.........ATTCTGGACGGATACTGCGATTG----C..................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................CCATCGATAAGAAGGCAGATGGT................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
......................................................................................................................................................................ATCCGTTCCTCCATCGATAAGAAG.........................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...........................GATTG----CCTTTATGCAGGGA.....................................................................................................................................................................	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................ATCCGTTCCTCCATCGATAAGAA..........................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..............................TG----CCTTTATGCAGGGAGGAGG................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
....................................................................................................................................................................................CGATAAGAAGGCAGATGGTGTCATCA-AT......	28	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................................AATCCGTTCCTCCATCGATAA.............................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
........................TGCGATTG----CCTTTATGCAGGGAGGAGG................................................................................................................................................................	27	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
....GGTGAATTCTGGACGGATACTGCGATTG----...................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.....................................CTTTATGCAGGGAGGAGG................................................................................................................................................................	18	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................AATCCGTTCCTCCATCGATAAGAAGGCA......................	28	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................GCAGATGGTGTCATCA-ATGGGGC.	23	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
........................................................................................................................................................................CCGTTCCTCCATCGATAAGA...........................	20	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...............................G----CCTTTATGCAGGGAGGAG.................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............CTGGACGGATACTGCGATTG----C..................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................GAATCCGTTCCTCCATCGATAAGAAGGC.......................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................CCTTTATGCAGGGAGGAGG................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................CTGCGATTG----CCTTTATGCAGGGAGGAG.................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................ATCGATAAGAAGGCAGATGGTGT..............	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................CGATTG----CCTTTATGCAGGGAGGAGG................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GTTCCTCCATCGATAAGAAGGCA......................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................ATAAGAAGGCAGATGGTGTCATCA-AT......	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......GAATTCTGGACGGATACTGCGATTG----CCT................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................TACTGCGATTG----CCTTTATGCAGGGAGGA..................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................AATCCGTTCCTCCATCGATAAGAAGG........................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................ATTG----CCTTTATGCAGGGAGGA..................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................AGATGGTGTCATCA-ATGG....	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CGATAAGAAGGCAGATGGTGT..............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........AATTCTGGACGGATACTGCGATT........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................GCGATTG----CCTTTATGCAGGGAGGAGG................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................ATAAGAAGGCAGATGGTGT..............	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................ACTGCGATTG----CCTTTATGCAGGGAGGA..................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................ATAAGAAGGCAGATGGTGTCATC..........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................CCATCGATAAGAAGGCAGATGGTGTCA............	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......GAATTCTGGACGGATACTGCGATTG----C..................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................GATTG----CCTTTATGCAGGGAGGAGG................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................TG----CCTTTATGCAGGGAGGAGT................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................CTGCGATTG----CCTTTATGCAGGGAGGAGGA...............................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................CGATAAGAAGGCAGATGGTGTCAT...........	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....GGTGAATTCTGGACGGATACTGC............................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................AAGAAGGCAGATGGTGTCATCA-ATGGG...	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................ATCGATAAGAAGGCAGATGGTGTCATC..........	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................CTCCATCGATAAGAAGGCAGATGGTGTC.............	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................ACTGCGATTG----CCTTTATGCAGGGAGGAG.................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................GTTCCTCCATCGATAAGAAGG........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................CCTCCATCGATAAGAAGGCAGATG..................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................AATCCGTTCCTCCATCGATAAGAAG.........................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................GGAATCCGTTCCTCCATCGATAAGAA..........................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..GCGGTGAATTCTGGACGGATACT..............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GTTCCTCCATCGATAAGAAGGCAGAT...................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....GGTGAATTCTGGACGGATA................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................ATACTGCGATTG----CCTTTATGCAGGGAGGA..................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GCGGTGAATTCTGGACGGATACTGC............................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GGCAGATGGTGTCATCA-ATGGGGCC	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......GAATTCTGGACGGATACTGCGATTG----CCTT...............................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........ATTCTGGACGGATACTGCGATTG----CCT................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................TG----CCTTTATGCAGGGAGGAGGA...............................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................ATCCGTTCCTCCATCGATAAGAAGGC.......................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................ATTG----CCTTTATGCAGGGAGGAGG................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................CCATCGATAAGAAGGCAGAT...................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........ATTCTGGACGGATACTGC............................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....GTGAATTCTGGACGGATACTGCGATTG----...................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....GTGAATTCTGGACGGATACTGCGATTG----C..................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................G----CCTTTATGCAGGGAGGAGG................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AAGGCAGATGGTGTCATCA-ATGGG...	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....GTGAATTCTGGACGGATACTG.............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.GGCGGTGAATTCTGGACGGAT.................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................ATTG----CCTTTATGCAGGGAGGAGGA...............................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................ATCCGTTCCTCCATCGATAAGAAGGCAGAT...................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................ATCGATAAGAAGGCAGATGGTGTCATCA-AT......	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................GGCAGATGGTGTCATCA-ATGGG...	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................ATCCGTTCCTCCATCGATAAGAAGGCA......................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................AATCCGTTCCTCCATCGATAAGAAGGC.......................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......GAATTCTGGACGGATACTGCGATTG----...................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................CGGATACTGCGATTG----CCT................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................CCATCGATAAGAAGGCAGATGGTGT..............	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................CATCGATAAGAAGGCAGATGGTGTCATC..........	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....GGTGAATTCTGGACGGATACT..............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GGGTGGAGAATTCTGGACGGATGCACCGATTG----CCTTTATGCAGGGAGGAGGTGGGTTCA-ATTAGCTTGATTAGAAA----GATC-------------A--------------AAAG----ATA------------CTGA---T-A-AAA--TCCTTTAGGAATTCGAGCCTCCGTTGAAAAGCAAGCCGATGGAGCCATCA-ATGGAGCC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGGCGGAGAGTTCTGGACAGATGCACCGATTG----CCTTTATGCAGGGCGGAGGTGGGTTGC-AG--GAGTGACCAGTTG-----TAT-------------G----------AAAA---C----AAG---------A--CTAAGCTT-G-AAT--CCCTTTAGGAATCCGCGCCTCCGTCGATAAGCAGGCGGATGGAGCCATCA-ATGGGGCC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGGTGGAGAATTCTGGACAGATGCACCAATTG----CCTTTATGCAGGGAGGAGGTGGGTTCA-ATCAGTAATA--TGTTG----GGAG-------------T--------TAAAAT---C----TAG---------ATATTAA-CTTGA-AAT--CCTTTTAGGGATTCGCGCTTCCGTCGATAAGCAGTCGGATGGAGCCATCA-ATGGGGCC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGACAGAAACTCTTGGACAGATGCACCCATAGGACTCATTAATGCAGGGGGTAAGTGATTGAG-TCTTGAGG-ATTAATGA-----TCT-------------T--------------TAAA----T---------------------------T--GGAATTAGCCATTAGAACTTCGGTTGAATCCGGGGAAACGGGAGCCATCA-CAGAGGCC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGGTGGGGAGTTCTGGACGGATGCATCTATCG----CCTTTATGCAGGGAGGAGGTGGGTTTCGCCCGGATTAGACAGAGC----AA-C-------------C--------------GAAC---GT-----------T--CTGACCTT-G-TATTCACTCTCAGGAATCCGCGGCTCTGTCGATAAGCAGGCGGATGGAGTCATCA-ATGGAGCC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGGTGGCGAGTTCTGGACGGACACCCCGATCG----CCCTAATGCAGGGAGGAGGTGGGTACT-CGAG------------C------------AGACCTTTCTATTAGAGAT--CA-ACTGAGAGT-----------A--ATGACCTT-G-AAC--TCCCCCAGGAATCCGCGCCTCTGTTGATAAGCAGGACGATGGAGCCATCA-ATGGGGCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGGTGGCGATTACTGGACAGATGCATCCATTG----CCTTGATTCAGGGAGGCGGTGAGCTGT-TCGAAAGAAAAAATAATAACTGGTT------------------------------AA----CTACC-----------CTAATGT-A-ATC--TCCTTCAGCTATTCGGGCCTCTGTGGAGAAGGAAAACGATGGAGCCATTA-ACGGAGCC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GGGCGGCGATTTCTGGACAGATGCTGCGATTG----CTTTCATGCAGGGAGGAGGTTGTATTT-CAA-GAAATATGAACTA-----TTG-------------A-----------AAA---A----TATA-----------TTTAAACC-A-TCT--CTTTTTAGGTATTCGCAGCTCCATTGAAAAACGATCTGATGGGTCCATAA-CCGACAAC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................CGCAGCTCCATTGAAAAACGATCTGATGG.................	29	1	1.00	1	1	0	0	0	0	0

droBip1

GGGCGGCGATTTCTGGACTGATGCCGCCATTT----CTTTGATGCAGGGAGGAGGTTGTATTT-ATAA--ATATTTAAAGA-----CTT-------------A----------AAGA---A----TAT---------A--TTTAAACC-A-CAT--ATTTGTAGGTATTCGCAGCTCCATTGAAAAACGATCGGATGGATCTATAA-CCGACAAT	Size	Hit Count	Total Norm	Total
No Reads

dp5

GGGCGGCGACTACTGGACCGATGCGGCAATCG----CAGTTATTGTGGGAGGCGGTTCGTAGG-ATGC-----T--CC----AATGCTCCATTACACCCATTT--------------GTTA----TC-CT-----------TGAGTTT-TTGCA--ACTTGCAGGCATACGCAGCTCGATCGAGAAGAAGTCCGACGGCTCGATCA-CCGACAGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........TACTGGACCGATGCGGCAAT.........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........CTACTGGACCGATGCGGCAAT.........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GGGCGGCGACTACTGGACCGATGCGGCAATCG----CAGTCATTGTGGGAGGCGGTTCGTAGG-ATGC-----T--CC----AATGCTCCATTACACCCATTT--------------GTTA----TCCT------------TGAGTTC-TTTCA--ACTTGCAGGCATACGCAGCTCGATCGAGAAGAAGTCCGACGGCTCGATCA-CCGACAGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

CGGAGGGGAATACTGGACTGATGCTTCTATTG----CTCTACTTCAAGGCGGCGGTAGGTAGT-AT--GTGTCTTTAGTGT----CCCG-------------T--------------GTCT----TAT-T-----AATCGTTCCCCTC-C-CTT--CCTTCTAGGCATACGAGCCAGCATTGACAAAGATGCGGATGGCAATATTA-CTGGCAGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................................................................TGACAAAGATGCGGATGGC................	19	1	5.00	5	0	0	5	0	0
..................................................................................................................................................................................ATTGACAAAGATGCGGATGGC................	21	1	3.00	3	0	0	3	0	0
....................................................................................................................................................................................TGACAAAGATGCGGATGGCA...............	20	1	3.00	3	0	0	2	1	0
..................................................................................................................................................................................ATTGACAAAGATGCGGATGGCA...............	22	1	2.00	2	0	0	1	1	0
........AATACTGGACTGATGCTTCTATTG----CT.................................................................................................................................................................................	26	1	2.00	2	0	0	1	1	0
.........ATACTGGACTGATGCTTCTATTG----CT.................................................................................................................................................................................	25	1	2.00	2	0	0	1	1	0
......................................................................................................................................................................ATACGAGCCAGCATTGACAAA............................	21	1	2.00	2	0	0	2	0	0
............................................................................................................................................................................GCCAGCATTGACAAAGATGCG......................	21	1	2.00	2	0	0	1	1	0
......................................................................................................................................................................ATACGAGCCAGCATTGACAAAGATG........................	25	1	2.00	2	0	0	0	2	0
............................ATTG----CTCTACTTCAAGGCGGCGGC...............................................................................................................................................................	24	1	2.00	2	0	0	1	1	0
..................................................................................................................................................................................ATTGACAAAGATGCGGATGG.................	20	1	2.00	2	0	0	2	0	0
...................................................................................................................................................................................TTGACAAAGATGCGGATGG.................	19	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................CAAAGATGCGGATGGCAAT.............	19	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................ACGAGCCAGCATTGACAAAGAT.........................	22	1	1.00	1	0	0	0	1	0
....GGGGAATACTGGACTGATGCTTCT...........................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
....GGGGAATACTGGACTGATGCTTCTATTG----...................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................ATGCGGATGGCAATATTA-CTGGC...	23	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................ATTGACAAAGATGCGGAT...................	18	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................CAAAGATGCGGATGGCAATATTA-CTG.....	26	1	1.00	1	0	0	0	1	0
.........ATACTGGACTGATGCTTCTATTG----CTCTA..............................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
.........ATACTGGACTGATGCTTCTATT........................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................ATTGACAAAGATGCGGATG..................	19	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................TGACAAAGATGCGGATGGCAAT.............	22	1	1.00	1	0	0	1	0	0
.....................................................................................................................................................................................GACAAAGATGCGGATGGCA...............	19	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................GACAAAGATGCGGATGGCAAT.............	21	1	1.00	1	0	0	1	0	0
............................ATTG----CTCTACTTCAAGGCGGC..................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.........ATACTGGACTGATGCTTCT...........................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
...........................TATTG----CTCTACTTCAAGGCGGC..................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
..........TACTGGACTGATGCTTCTATTG----CTCTA..............................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................ATGCGGATGGCAATATTA-CTGGCA..	24	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................GACAAAGATGCGGATGGCAATAT...........	23	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................AGCATTGACAAAGATGCGGATGGCA...............	25	1	1.00	1	0	0	1	0	0
.......GAATACTGGACTGATGCTTCT...........................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...............GACTGATGCTTCTATTG----CT.................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.........ATACTGGACTGATGCTTCTATTG----...................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
..........TACTGGACTGATGCTTCTATTG----CT.................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................GACAAAGATGCGGATGGC................	18	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................CATTGACAAAGATGCGGATGGC................	22	1	1.00	1	0	0	1	0	0
...............................G----CTCTACTTCAAGGCGGCGGC...............................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.........ATACTGGACTGATGCTTCTATTG----CTC................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.....................TGCTTCTATTG----CTCTACTTCAAGGC.....................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................ATACGAGCCAGCATTGACAAAGAT.........................	24	1	1.00	1	0	0	0	1	0

droVir3

GGGTGGCGATTACTGGACAGATGCTCCTATAG----CTCTGCTGCAAGGCGGCGGTAAGTCTG-ACAGCTT---TGAGTTG-----GAG-------------C--------C--AAT---CTAAGT-----------C--C--AAAGT-T-TTA--TTTTGTAGGCATTCGCAGCTCCATTGACAAAAATGCGAACGGTTCCATTA-CGGGCAGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................TATAG----CTCTGCTGCAAGGC.....................................................................................................................................................................	19	2	1.50	3	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GTAAGTCTG-ACAGCTT---TGAA.........................................................................................................................................	20	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CTATAG----CTCTGCTGCAAGG......................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................ATGCGAACGGTTCCATTA-........	18	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................CCTATAG----CTCTGCTGCAAGGCGGCGGC...............................................................................................................................................................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................CTATAG----CTCTGCTGCAAGGCGGCGGC...............................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......GATTACTGGACAGATGCT..............................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AAAATGCGAACGGTTCCATTA-CGGGC...	26	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AG----CTCTGCTGCAAGGCGGCGGC...............................................................................................................................................................	22	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....GGCGATTACTGGACAGATGCT..............................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................G----CTCTGCTGCAAGGCGGCGGC...............................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GATTACTGGACAGATGCTCCTATAG----CT.................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GACAAAAATGCGAACGGTC...............	19	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ATGCTCCTATAG----CTCTGCTGC..........................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................AACGGTTCCATTA-CGGGC...	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..GTGGCGATTACTGGACAGATGCTC.............................................................................................................................................................................................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GCGATTACTGGACAGATGCTCCTATAG----...................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................GACAAAAATGCGAACGGTTC..............	20	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GCTCCTATAG----CTCTGCTGCAAGG......................................................................................................................................................................	23	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ATTGACAAAAATGCGAACGGTT...............	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................CTATAG----CTCTGCTGCAAGGCGGC..................................................................................................................................................................	23	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GTGGCGATTACTGGACAGAT.................................................................................................................................................................................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GCGATTACTGGACAGATGCT..............................................................................................................................................................................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................ATGCGAACGGTTCCATTA-CGGGC...	23	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGGCGGCGACTACTGGACGGATGCACCCATAG----CTCTGCTCCAAGGAGGTGGTAAGTTTG-ACAA-------TTGCAT----ATTT-------------T--------------AATA----TTCCCATGATA-T--ATGAAATG-T-TTC--TCTTTTAGGAATACGAGCATCCATTGACAAGAATTCAATTGGTTCGATTA-CTGGCAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................ATACGAGCATCCATTGACAA.............................	20	1	5.00	5	1	0	0	1	0	3
......................................................................................................................................................................ATACGAGCATCCATTGACAAGA...........................	22	1	5.00	5	4	0	0	0	0	1
.......................CACCCATAG----CTCTGCTCCAAGGAGGT..................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
.........CTACTGGACGGATGCACCC...........................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
......................................CTGCTCCAAGGAGGTGGA...............................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................ATACGAGCATCCATTGACAAGAA..........................	23	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................TACGAGCATCCATTGACAAGAATTC.......................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................ACAAGAATTCAATTGGTTCG.............	20	1	1.00	1	1	0	0	0	0	0
...CGGCGACTACTGGACGGATGCACCC...........................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................TCTGCTCCAAGGAGGTGGA...............................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................GACAAGAATTCAATTGGTT...............	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................GACAAGAATTCAATTGGTTCGA............	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................ACGAGCATCCATTGACAAG............................	19	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................ATACGAGCATCCATTGACAAGAATTC.......................	26	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................GAATTCAATTGGTTCGATTA-CTGGCAGC	28	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................TACGAGCATCCATTGACAAGA...........................	21	1	1.00	1	1	0	0	0	0	0
...............GACGGATGCACCCATAG----CTCTGCTC...........................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................GAATACGAGCATCCATTGACAAGA...........................	24	1	1.00	1	1	0	0	0	0	0
..............................AG----CTCTGCTCCAAGGAGGA..................................................................................................................................................................	19	2	0.50	1	1	0	0	0	0	0

droGri2

GGGCGGTGATTATTGGACAGACGCAGCGATTG----CTCTACATCAGGGTGGAGGTAAGGCTTATTAAATGTGCATGATAA----AA-T-------------T--------------GTA-----TAAAA-----------TGTTTC--T-CTT--TATTCCAGGCATACGTAGCTCAATTGAAAGGAAATCCGATGGCATTATCACACAGAGCG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................ACAGACGCAGCGATTG----CTCTACA............................................................................................................................................................................	23	1	1.00	1	1	0
....................................................................................................................................................................................TGAAAGGAAATCCGATGGCATTAT...........	24	1	1.00	1	1	0

dsi_22752

2r:14020873-14020932 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads