ID:

dsi_22750

 Coordinate:

3l:15807810-15807959 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTTGCTCGTGCCTTTATAAATATATACATAAGAGTGTCAAAAATATAAATGTAAGGAAACATATATTTATGTAAAATATTAAGAAATATCATTACTTTTTAAATATGCATTTAAGTTACAAAGTAAATGTGTCCGTCCGTCTGAACATCGAGAGATAGCCAACAACTGTATTTTTGTTTAACAATATATTCTATTTTAATATTTTTCCTCTGTGTACTGATGTAATTTTGATATATCGATGGCTGGTAAT
**************************************************....(((.((((.(((((.(((((..(((((((((.((....)).))))))).........))..)))))))))).)))).)))....((.((((((..((((.((((.......)))).))))))))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
...............................................AATGTAAGGAGACATA........................................................................................................................................................................................... 16 1 6 0.50 3 3 0 0 0 0 0 0
.TTGCTCTTGCCTGTATAA....................................................................................................................................................................................................................................... 18 2 4 0.50 2 0 2 0 0 0 0 0
................................................ATGTAAGGAGACATA........................................................................................................................................................................................... 15 1 7 0.29 2 2 0 0 0 0 0 0
..TGCTCGTGCCTTGAT......................................................................................................................................................................................................................................... 15 1 4 0.25 1 0 0 0 1 0 0 0
...........................................................................................................................................................TAGCCGACAACTGTATGTTTTTT........................................................................ 23 3 4 0.25 1 0 0 1 0 0 0 0
...................................................................................................................................................TCGAGAGATATCGAAC....................................................................................... 16 2 20 0.20 4 4 0 0 0 0 0 0
......................................................................................................................................................AGTGATAGCAAACAACTGTATTTT............................................................................ 24 2 6 0.17 1 0 0 0 0 1 0 0
...................................................................................................................................................TCGAGAGATATCGAACA...................................................................................... 17 2 12 0.08 1 1 0 0 0 0 0 0
......................................AAAAATATAAATGTA..................................................................................................................................................................................................... 15 0 15 0.07 1 0 0 0 0 0 1 0
..........................................................................................................................................GGCTGCACGTCGAGAGATA............................................................................................. 19 3 15 0.07 1 1 0 0 0 0 0 0
.................................................................................................................................................CGTCGAGAGATATCGAACA...................................................................................... 19 3 18 0.06 1 1 0 0 0 0 0 0
...........................................................................................................................................GCCGAACGTCGAGAGATA............................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0
..............................................................................................................................................GAACATCGAGCGATCGC........................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0
..........................................................................AATATTAACGAATATCATTA............................................................................................................................................................ 20 2 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

CAACGAGCACGGAAATATTTATATATGTATTCTCACAGTTTTTATATTTACATTCCTTTGTATATAAATACATTTTATAATTCTTTATAGTAATGAAAAATTTATACGTAAATTCAATGTTTCATTTACACAGGCAGGCAGACTTGTAGCTCTCTATCGGTTGTTGACATAAAAACAAATTGTTATATAAGATAAAATTATAAAAAGGAGACACATGACTACATTAAAACTATATAGCTACCGACCATTA
**************************************************....(((.((((.(((((.(((((..(((((((((.((....)).))))))).........))..)))))))))).)))).)))....((.((((((..((((.((((.......)))).))))))))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR902009
testis
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................ACGTAAATTCAATGTTTC............................................................................................................................... 18 0 1 2.00 2 1 0 1 0 0 0 0 0 0
........................................................................................................TACGTAAATTCAATGTTTC............................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................................ATACGTAAATTCAATGTT................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................AGCTCTCTATCAGTTTTTGACATAAAAT........................................................................... 28 3 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................AACACAGGCAGGCAGAGTTGT....................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................AAAAACAAATGGCTATATAAGGT......................................................... 23 3 4 0.50 2 0 1 0 0 0 0 1 0 0
.....................................................................................................................................GCAGGCAAACTTGTAGCTCT................................................................................................. 20 1 4 0.25 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................AAAAGGAGGCCCATGACT.............................. 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................AAAACAAATGGCTATATAAGGT......................................................... 22 3 10 0.20 2 0 1 0 0 0 0 0 1 0
............................................................................................................................................................................................................AAGGAGACCCATGAC............................... 15 1 7 0.14 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................AAACAAAATGTTATCTAGGAT......................................................... 21 3 7 0.14 1 0 0 0 0 0 0 0 1 0
...........................................................................................AAGGAAAAATTGATAGGTAAAT......................................................................................................................................... 22 3 9 0.11 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AAAGGAGACCCATGA................................ 15 1 11 0.09 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................AAAGGAGGCCCATGACT.............................. 17 2 14 0.07 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................AAAGGAGTCCCATGACT.............................. 17 2 16 0.06 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................GAAAGGAGACCCATGA................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 09:16 PM