ID:

dsi_22749

 Coordinate:

3l:17605546-17605774 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-65.0 -65.0 -64.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
Gypsy8-I_Dpse-intLTRGypsy-
mature
  1. 2l:3603405-3603420 +
  2. 2l:4626181-4626196 -
  3. 2l:7023698-7023713 -
  4. 2l:9350619-9350634 +
  5. 2l:16066865-16066880 +
  6. 3l:1566084-1566099 -
  7. dsi_22749  3l:17605688-17605703 -
  8. 3l:20033353-20033368 -
  9. 3r:818683-818698 -
  10. 3r:5353518-5353533 -
  11. 3r:6273831-6273846 -
  12. 3r:8938367-8938382 +
  13. 3r:16154158-16154173 +
  14. 3r:16990891-16990906 -
  15. dsi_10651  3r:17170608-17170623 -
  16. 3r:17339097-17339112 +
  17. 3r:18132455-18132470 +
  18. 3r:22955462-22955477 -
  19. 3r:24948384-24948399 +
  20. x:19954762-19954777 +
star

Sense Strand Reads

AGCAGCATGTCCGCGTGATCCGCGATGGCCGGCTGTACGATGAAGCCACGGTGGTGGTGGCTGCCCGTCGGCATTCGGTGTCGCCACCCCACNANGCCACAACAGCAGCAGCAGCATCAAGCGCAGCAGCAGCATCAATCGCATCAGCAGCATGTGATCGCCAGCGTTAGTTCTAGCAGCAGCTCATCGGCCATTGGATCGGGCGGCTCTTCTTCATCGCACATCTTTCGCACGCCCGTGGTTTCCAGCAGCAGCAGCAGCAATATTCACCACCAGCAGCAACAGCAACAGCAGCAATCGGTGATGCGGCCACCTCCGCCGCCGCCGCC
**************************************************.(((((((((((((.(((.(((....((((....))))................((.((.((.((.......)).)).)).))....(((((((.......))))))).))).))).........((.((.(((....(((((......((((((((......................)).)))))))))))...))).)).)).)))))......))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
....................................................................................................................................................................................................................................................................................................AGCAATCGGTGATGCGGC................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................CCCGTGGGTTCCAGCAGA............................................................................. 18 2 5 0.60 3 1 0 0 0 0 2 0 0
..........................................................................................................................................................................................................................................CCCGTGGGTTCCAGCAGAAGCAT........................................................................ 23 3 2 0.50 1 0 0 1 0 0 0 0 0
........................................................................................................................................................TGTGATCGGCATCGTTAGTT............................................................................................................................................................. 20 2 3 0.33 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................AGCGGAAACAGCAACAGCAGCATTC.............................. 25 3 3 0.33 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................CCGCGGCAGCAAAATTCACCA......................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................CAGCAGCAGCGGCCATATTC............................................................. 20 2 3 0.33 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................ATGTCATCGCCAGGGTT................................................................................................................................................................. 17 2 15 0.20 3 0 1 0 2 0 0 0 0
.....................................................................................................................................................GTATGTCATCGCCAGGGTT................................................................................................................................................................. 19 3 13 0.15 2 0 0 0 2 0 0 0 0
........................................................................................................................................................................................CATCGGGCAATGAATCGGGC............................................................................................................................. 20 3 8 0.13 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................GCAAGTCATCGCCAGGGTT................................................................................................................................................................. 19 3 19 0.05 1 0 0 0 1 0 0 0 0
.........................................................................................................................CGCAGCAGCAGCATCA................................................................................................................................................................................................ 16 0 20 0.05 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................CAGGGATAGTTCTAGC........................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 1 0
........................................................................................................................................................TGTGATCGGCATCGTTAAT.............................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................GTTTCCGGCAGCAGCAGG....................................................................... 18 2 20 0.05 1 0 1 0 0 0 0 0 0
...............................................................CCCGTCGGCTGTCGGTG......................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0
....................................................................................................................................................AGTATGTCATCGCCAGC.................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................................CAGCAACAGCAACAGCAGC.................................. 19 0 20 0.05 1 1 0 0 0 0 0 0 0
...........................GCAGGCTGTACTATGA.............................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

TCGTCGTACAGGCGCACTAGGCGCTACCGGCCGACATGCTACTTCGGTGCCACCACCACCGACGGGCAGCCGTAAGCCACAGCGGTGGGGTGNTNCGGTGTTGTCGTCGTCGTCGTAGTTCGCGTCGTCGTCGTAGTTAGCGTAGTCGTCGTACACTAGCGGTCGCAATCAAGATCGTCGTCGAGTAGCCGGTAACCTAGCCCGCCGAGAAGAAGTAGCGTGTAGAAAGCGTGCGGGCACCAAAGGTCGTCGTCGTCGTCGTTATAAGTGGTGGTCGTCGTTGTCGTTGTCGTCGTTAGCCACTACGCCGGTGGAGGCGGCGGCGGCGG
**************************************************.(((((((((((((.(((.(((....((((....))))................((.((.((.((.......)).)).)).))....(((((((.......))))))).))).))).........((.((.(((....(((((......((((((((......................)).)))))))))))...))).)).)).)))))......))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M025
embryo
......................................................................................................................................................................................................................................GTGCGGGCTCCAAAG.................................................................................... 15 1 4 12.00 48 48 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GGGCACCAAATGACGTCGTT........................................................................... 20 3 3 8.33 25 25 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GGGCACCAAATGACGTCGTTGT......................................................................... 22 3 2 6.50 13 13 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GGGCACCAAATGACGTCGTTG.......................................................................... 21 3 2 4.00 8 8 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GGGCACCAAATGACGTCGT............................................................................ 19 2 2 2.50 5 5 0 0 0 0 0 0
..............................................................................................................................................................GCGGTCGCAAGCAAGA........................................................................................................................................................... 16 1 2 2.00 4 0 4 0 0 0 0 0
..........................................................................................................................................................................................................................................GGGCACCAAATGACGTCG............................................................................. 18 2 3 1.33 4 4 0 0 0 0 0 0
...............................................................................................................................................................CGGTCGCAAGCAAGA........................................................................................................................................................... 15 1 9 1.00 9 3 4 1 0 0 1 0
..............................................................................................................................................................GCGGTCGCAAGCAAGAT.......................................................................................................................................................... 17 1 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................GCGGTCGCAAGCAAG............................................................................................................................................................ 15 1 6 0.83 5 0 3 2 0 0 0 0
...............................................................................................................................................................CGGTCGCAAGCAAGAT.......................................................................................................................................................... 16 1 2 0.50 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................AGAGTGCGGGCTCCAAAG.................................................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................................................................CAGCGGTCGCAATCAGGA........................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 1 0 0
..............................GCGATATGCTACTTCGG.......................................................................................................................................................................................................................................................................................... 17 2 3 0.33 1 0 0 1 0 0 0 0
..............................................................................................................................................................GCGGTTGCAATCAAG............................................................................................................................................................ 15 1 3 0.33 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................TCGTTATGAGTGGTCGTCG.................................................... 19 2 4 0.25 1 0 0 0 1 0 0 0
...................GACGCTACCGGCTGACAAGCT................................................................................................................................................................................................................................................................................................. 21 3 6 0.17 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TGAGTGCTGGTCGTCGCTGTC............................................ 21 3 6 0.17 1 1 0 0 0 0 0 0
...................................................................................................................................................................................GTCGAGTAGCCAGTA....................................................................................................................................... 15 1 14 0.14 2 0 0 0 0 0 2 0
.............................................................................................................................................................GGCGGTCGCAAGCAAGA........................................................................................................................................................... 17 2 15 0.13 2 0 2 0 0 0 0 0
................................................................................................................................................................GGTCGCAATCAAGATTC........................................................................................................................................................ 17 2 10 0.10 1 0 1 0 0 0 0 0
..............................................................................................................................................................GCGGTCGCAAGCAAGAC.......................................................................................................................................................... 17 2 13 0.08 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................CCGCCGACAAGAAGTAT............................................................................................................... 17 2 13 0.08 1 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................ATGGTCGTCGTCTTCGTCGTTAT................................................................ 23 2 13 0.08 1 0 0 0 1 0 0 0
....................................................................................................................................................................................TCGACTAGCCGGTAA...................................................................................................................................... 15 1 14 0.07 1 0 0 0 0 0 1 0
.................................................................................................GTGTTGTCGTCGTCG......................................................................................................................................................................................................................... 15 0 20 0.05 1 0 0 0 1 0 0 0
...................................................................................................GTTGTCGTCGTCGTCG...................................................................................................................................................................................................................... 16 0 20 0.05 1 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................GTCGTCGTTGTCGTTGTCG..................................... 19 0 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:17605496-17605824 - dsi_22749 AGCAGCAT---GT--CC----------------GCGT-GATCCGCGATGGCCGGCT--------------GTA-CGATGAAGCCACGGTG--------------------------------------------------------------------GTGGTGGCT---GCCCGTCGGCATTCGGTGTCGCCACC-CCACNANGCC---------------------------ACAAC------------------------------AGCAGCA--------------------------------------------------------------------------GCAGCATCAAGCGC---------------------------AGCAGCA---------GCATCAATC----------------------GCAT---------CAGCAGCATGTGATCGCCAGCGTTAG-------------TTCTAGCAG---C------AGCTCATC----GGCCATTGGATCGGGCGGCTCTTCTTCATCGCACATCTTTCGCACGCCCGTGGTTTCCAGCAGCAGCAG--------------------------------------------CAGCAATATTCACCACCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------A---------------TCGGTGATGCGGCCACCTCCGCCGCCG---CCGCC
droSec2 scaffold_19:47035-47337 - T-------------------------------------------------------------------------C---GC----------AAGTTTGTGGTTAGCACCAGCACGCGACACGTTAATGTGATCGCCTCCAATCACTTTCAACA-------------------------------------------------------------------------------------AC------------------------------AGCAGCA--------------------------------------------------------------------------GCAGCATCAAGCGC---------------------------AGCAGCAG---------CATCAATC----------------------GCATCAGCAGCATCAGCAGCATGTGATCGCCAGCGTTAG-------------TTCTAGCAG---C------AGCTCATC----GGCCGTTGGATCGGGCGGATCTTCTTCTTCGCACATCTTTCGCACGCCCGTGGTTTCCAGCAGCAGCAG--------------------------------------------CAGCAATATGCACCACCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------A---------------TCGGTGATGCGGCCACCTCCGCCGCCG---CCTCC
dm3 chr3L:18051453-18051822 - AACAGTAC---ATCTCC--------------A-CTGGTGTTCC------------ACCACCCACGGCAGCGGCTC---GG----------AAGTTTGTGGTTAGCACCAGCACGCGACACGTTAATGTGATCGCCTCCAATCACTTTCAACA-------------------------------------------------------------------------------------AC------------------------------AGCAGCA--------------------------------------------------------------------------GCAGCACCAAGCACAGCAGCATC------------------AGCAGCAGCATCAGCAGCATCAGCA----------------------ACAT---------CAGCAGCATGTGATCGCCAGCGTTAG-------------TTCTAGCAG---C------AGCTCATC----GGCCATTGGATCAGGCGGCTCTTCTTCTTCGCACATCTTTCGCACGCCCGTGGTTTCCAGCAGCAGCAG--------------------------------------------CAGCAATATGCACCATCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------ATCGAGCCTGGGCAACTCGGTGATGCGGCCACCTCCGCCGCCG---CCTCC
droEre2 scaffold_4784:15838121-15838466 + GG----------------------------------------------------------------------------------------AAGTTTGTGGTCAGCACCAGCACGCGGCACGTTAACGTGATCGCCTCCAATCACTTTCAGCA-------------------------------------------------------------------------------------AC------------------------------AG------------TCGCA------------------------------------------TCA-----------------GCAGCATCAGTCGC---------------------------ATCAGCAGCATCAGCAGCATCAGAC----------------------GCAT---------CAGCAGCATGTGATCGCCAGCGTTAG-------------TTCTAGCAG---C------AGCTCATC----GGCCATTGGATCGGGCGGCTCTTCTTCTTCGCACATCTTTCGCACGCCCGTGGTATCCAGCAGCAGCAGCA-----GCAGCGGC---AACAG------------------CAGCAGCAACATGCACCAACAGCAGCAG------------------------------------------------------------------------------------------------------CAGCAACAGCA---------------------------------------------------------------------------------GCAGCAGCAGCA-------------GTCGAGCCTGGGCAACTCGGTGATGCGGCCACCCCCGCCGCCG---CCTCC
droYak3 3L:16006154-16006490 + GG----------------------------------------------------------------------------------------AAGTTTGTGGTCAGCACCAGCACGCGACACGTCAACGTGATCGCCTCCAATCACTTTCAACA-------------------------------------------------------------------------------------AC------------------------------AG------------TCGCA------------------------TCA---------G--------TCGCATCAGCCGCATCAGCAGCATCAGTCGC---------------------------ATCAGCAGCATCAGCAGCATCAGTC----------------------GCAT---------CAGCAGCATGTGATCGCCAGCGTTAG-------------TTCTAGCAG---C------AGCTCATC----GGCCATTGGATCGGGCGCCTCTTCTTCTTCGCACATCTTTCGCACGCCCGTGGTATCCAGCAGCAGCAG--------------------------------------------CAGCAACATGCAACACCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------GTCGAGCCTGGGCAACTCGGTGATGCGGCCACCTCCGCCGCCG---CCGCC
droEug1 scf7180000409471:1513099-1513483 + AATA-CAT---CT--CC--------------A-GTGGTGTTGC------------ACCACCCACGGCAGCGGCTC---GA----------AAATTTGTGGTTAGTACCAGCACGCGACACGTAAACGTGATTGCCTCCAACCACTTTCAG----------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------GCAACATCAATCGC---------------------------AGCAGCA---------ACATCCGGC----------------------GCAT---------CAACAAAATGTGATCGCCAGTGTTAG-------------TTCTAGTAG---T------GGCTCCTC----GTCCTCGGGACCAGCCGGCTCTTCTTCTTCGCACATCTTTCGCACGCCTGTCGTATCTAGCAGCAGCAGCA-----GCAGCAGCGGCAACAGCAACAACAACATTGCGCACAGCAGCAACATGCACCATCAGCAGCAA------------------------------------------------------------------------------------------------------CAGCAA------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------ATCGAACCTGGGCAACACGGTGATGCGGCCACCACCGCCACCG---CCTCC
droBia1 scf7180000302193:1354276-1354645 - AGCAATAT---GTCTCC--------------A-GCGGTGTTGC------------ACCGCCCACGGCAGCGGCTC---GG----------AAGCTGGTGGTTAGCACCAGCACGCGTCACGTGAACGTGATCGCCTCCAATCATTTCCAG----------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------GCAGCATCAGGTGC---------------------------AGCAGCAG---------CACCAGCC----------------------GCATCAGCAGCATCAGCAACATGTGATTGCCAGCGTTAG-------------TTCTAGCAG---T------GGCTCCTC----G------GGAGCAGCCGGCCCTTCTTCTGCGCACATCTTCCGCACGCCCGTGGTATCCAGCAGCAGCAGCA-----GCAACAGC---------------AACATGGCGCACAGCAGCAACATGCACCACCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCA-------------GGCGAACCTGGGCAGCTCGGTGATGCGGCCACCACCGCCGCCG---CCTCC
droTak1 scf7180000415794:305478-305792 - CA----------------------------------------------------------------------------GG----------AAGTTTGTGGTTAGCACCAGCACGCGACACGTAAACGTGATTGCCTCCAATCATTTCCAG----------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------GCAACATCAGTCGC---------------------------AGCAGCAG---CAGCAACATCAGTC----------------------GCATCAGCAACACCAGCAACATGTGATTGCCAGCGTTAG-------------TTCTAGTAG---T------GGCTC----------------------CGGCTCTTCTTCTTCGCACATCTTTCGCACGCCCGTGGTATCCAGCAGCAGCAGCA-----GCAACAGC---GGTGG------------------CAACAGCAACATGCACCACCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------ATCGAACCTGGGCAACTCGGTGATGCGGCCACCACCGCCGCCG---CCTCC
droEle1 scf7180000490993:951400-951735 - T-------------------------------------------------------------------------C---GC----------AAGTTTGTGGTTAGCACCAGCACGCGACACGTGAACGTGATTGCCGCGAATCAGTTTCAA----------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------GCAACATCAATCGC---------------------------AGCAGC---ATCAGCAACATCAGTC----------------------GCAT---------CAGCAACATGTGATTGCTAGCGTTAG-------------TTCTAGTAG---T------AGCTCCT----------TGGGATCAGCCGGCTCTTCTTCTTCGCACATCTTTCGCACGCCCGTGGTATCAAGCAGCAGCAGCA-----GCAGCAGTGCCAACAGCAAC---AACATTGGGCACAGCAGCAACATGCATCACCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCA-------------ATCGAACCTGGGCAACTCGGTGATGCGGCCACCACCGCCGCCG---CCTCC
droRho1 scf7180000779541:16198-16513 + AGCAACAT---GT--CC----------------GTGT-GATCCGCGATGGCCGCCT--------------GTA-CGATGAAACCACTGTG--------------------------------------------------------------------GTGGTGGCT---ACCCGTCGGCATTCGGTGTCGCCACCACCACTGCACC---------------------------ATCACTCCCGATCGGCGCCTGTATCGCCGGTGATTGCTAGGC--------------------------------------------------------------------------GTGGTG------------------------------------------------------------------GTGCTGCTGCCTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGATCAGCAGTATCAGCAAAGGCAGACGCCACCGCTGGCACCACCGCCGCCGCCTCCTCCACCCCCGCCTCCACCACCACCACCAC---AA---------------------CAGCA---ACAACAACAGCAGC---------AGCAACAA-----------------TACATCTCC----------------------------------------------------------------------AGTGGTGTTGC-ACCACCCACGGCA---GCGGC
droFic1 scf7180000454107:1643310-1643646 - AGCAGCAGTACATCTCC--------------A-GCGGGGTGGC------------ACCACCCACGGCAGCGGCTC---GG----------AAGTTTGTGGTTAGCACCAGCACGCGACACGTGAACGTGATTGCCGCGAACAGCTTCCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACATGTGATCGCCAGCGTTAG-------------TTCGAGCAG---T------GGCGCCTC----CTCCGTTGGGGCATCGGGCTCCTCCGCTTCGCACATCTTCCGCACGCCAGTGGTTTCAAGCAGCAGCAGCA-----GCAGCAGC---------------------------AGTGGCAACTTGCACCACCACCAGCAG------------------------------------------------------------------------------------------------------CAGCAACAGCT-----------------------------------------GCAG----------------------------------CAGCAGCAGCAACA-------------GGCGAACCTGGGCAACTCGGTGATGCGGCCCCCACCGCCACCG---CCTCC
droKik1 scf7180000302626:469636-469974 - GGCT----------------------------------------------------------------------C---GC----------AAGTTTGTGGTCAGCACTAGCACGCGACATGTAAACGTGATTGCCGCCAATCACTTCCAGCA----------------------------------------------------------------------------------ACAAC------------------------------AGCAGCA--------------------------------------------------------------------------GCAACACCAACAGC---------------------------AGCAGCA---------ACATC----------------------------AC---------CAGCAGCATGTGATTGCCAGTGTTAG-------------CTCTAGTAG---T------GGTTCC-------CCCAGTGGCTCCGCCAGCTCTTCTTCTGCCCACATCTTTCGCACGCCCGTGGTGTCCAGCTCTAGCTCTA-----GCTCCAGTTCGAGTTC------------------CAGCAGCAATCTGCAACACCACCAGCAA------------------------------------------------------------------------------------------------------CATCAGCAGCA--------------------------------------------G----------------------------------CAGCAGCAACAGCC-------------ACAGAATCTGGGCAGCTCGGTGATGCGGCCACCACCGCCTCCG---CCACC
droAna3 scaffold_13337:5173277-5173610 + AGCAACAT---GT--GC----------------GGGT-GATACGCGACGGGCGACT--------------GTA-CGATGAAGCCACTGTG--------------------------------------------------------------------GTGGTGGCA---GCTCGCAGGCACTCGGTGTCGCCACCACCGCTGCACC---------------------------ACCACTCGAGATCGGCGCCCGTTTCCCCGGTGATCGCCAGGA--------------------------------------------------------------------------GAAGCGTCTA---------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGAGCAGCAGTATCAGCAGCGACAGACGCCGCCCTTGGCGCCTCCTCCGCCCCCACCTCCGCCGCCACCTCCGCCACCGCCCCCCC------------A---------------------GCAACAGCAGCAGC---------AACAACAG-----------------TACATCTCAAGCGGAGTGCCACCACCCACAGCAGCGGCTAGAAAGTTTGTGGTTAGCACCAGT--------------------A------------------CG---CGGCA
droBip1 scf7180000396371:509046-509359 + AGCAACAT---GT--GC----------------GGGT-GATACGCGACGGGCGACT--------------GTA-CGATGAAGCCACTGTG--------------------------------------------------------------------GTGGTGGCA---GCTCGCAGGCATTCGGTGTCCCCACCACCGCTGCACC---------------------------ACCACTCGCGATCGGCGCCCGTCTCCCCGGTGATCGCCAGAA--------------------------------------------------------------------------GAAGCGGCGGG------------------------------------------------------------------------TAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGAGCAGCAGTATCAGCAGCGCCAGACGCCGCCCTTGGCACCTCCTCCGCCCCCACCTCCGCCACCACCTCCACCACCGCCCCCACAACAACAAC------------------------AGCA------GCAGCAACAACAGCAGCAGCAA-----------------TATATCTCT----------------------------------------------------------------------AGTGGTGTGGCA-CCAC--CCACTG---CAGCA
dp5 XR_group6:2095369-2095714 - AGCAGAAC---AC--GTACTACGAATTCAACAAGT-GGAATGC------------ACCGCTTAAGACGGAGAA-CAATGCGGCCTCTGTGTCGCCGGCGGCCACCATCAACATAC---------------------CCA------------------------------------------------------------------------------------------------------------------CATATCCCCA-------------------------------------------------GCA---------G--------ACGCAGCAGCAGCAACAGCAGCACCA------------------------------------------------AAGCCAGCA----------------------GCAGCAGCAGCACCTGCCGCA-------GCCG--------GCCCATCTGCAGTCCTCGCAGGCACAATCACATCTCACCCAGCTGGCGCAATATTATCCAGCCTTCCCCCAGCCCATTG-CCTCGCAGTACACGGCGTGCATGCAGCAGCAGCA-----GCAACAGC----------------------------------------AACAGCAGCAACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCA-------------------------------------GCAAGCATATACGCAACAG---CAGCA
droPer2 scaffold_20:802610-802859 - AGCAGCAT---GT--GC----------------GGGT-CATCCGGGATGGTCGGCT--------------GTA-CGATGAAGCCACTGTG--------------------------------------------------------------------GTGGTTGGTGGGGCACGTCGTCTGTCCGTGTCGCCGCCACCGCTCCACC---------------------------ATCACTCGCGCTCTGCGCCCGTGTCCCCCGTGATCAACAGAC--------------------------------------------------------------------------GTGGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCAGGT---------------ACCACCGTGTCCGGTGGCTACATGGATCAGCAGCAGCAATATCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCGCCAGACGCC-------------A---------------CCATTGGCGCCGCCACCACCGCCTCCA---CCGCC
droWil2 scf2_1100000004768:2244235-2244517 + AGCAGCAT---CT--TC--------------A-TCAT-CATCCTAG------------------------------------------------------------CCATCAC-------------------------AGTCAGACGCAGCA----------------------------------------------------------------TCAGCAGCTGTCACAGCA--------------------------------------------------------------------------------------------------------------------GCAGCAACAACAAC---AGCAGCAACAGCAACAACAACAGCAGCAGCA---------ACATCAACA----------------------GCAT---------CA-------------GCCAGCGC-AT-------------CACCTGCAA---C------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAGCCATCTCATCATCCACTTCCTCACACACCGCACCCGCTTCATCATC---------------------A--AACAACAGCAACAGC---------AGCAGCTCTGCAACATCAACTGCAA----------------------------------CCGCAACAACAACA-------------GC-------------------GTGGCGGCGG--ACTGCCTGGAGCGCCGCC
droVir3 scaffold_13052:1898150-1898485 - AGCAGCAA---CA--TC--------------A-ACAA-CAGCCGCTGCAGCAG-CAGCACCAACAACA-------------GCCACCGTA--------------------------------------------------------------------GCAGCCGCT---GCA-------------------------------------------GCTTCAGCAGTCGCAGCA---GC------------------------------AG------------CA-------------CAGCAACATCAACAGCAACAGCAACAGCCGCAGCA-----------------GCAGCA---------------------------------------------------GCAGCAGCAGCAGCAGCAGCAGTAATTAGCTGCAGCAGCAGCAGCAGCAGCA-------GCAG----TAATTAGCTGCAGCAGCAGCAGCCGCAGC---------------------------------------------------------------AGCAGCAGCA----------------GCCGC--------------A----------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCCGCAG------CAGCA------------------------GCAGCAGCAG-----------------TAGTAATTAGCTGCAGCAGCAA------------CAGCCGCAGCAGCA-------------G---------------CAGCAGCCGCAGCAGCAGCCGCAGCAG---CAACA
droMoj3 scaffold_6500:16033258-16033552 - AGCAGCAA---CA--GC--------------A-GCAG-CAGCAGCAACAGCAG-TA------------------------------------------------------------------------------------GCAGCAGCAGCAACAGCAGCAG----------------------------------------------------------------------------------------------------------------CAGCAACAGCGGCAGCAGCAGCAACAGCAACAGCAGCAGCA---------G--------CAGCAACAGCAGCAACAGCAGCAGCA------------------------------------------------GCAACAGCA----------------------GCAGCAGCAGCAACAGCAGCA-------GCAG--------CAGCAACAGCAGCAGCAGCAGCAAC---------------------------------------------------------------AGCAGCAGCA----------------ACAGC--------------A---GTAG-----------------------------------------------------------------------------------------------CAG--------------------CAG------CAGCAACAGCAGCAGCAGCAACAGCA-----------------------------------------GCAG-------------CAGCAGCAA------------CAGCAACAGCAGCA-------------G---------------CAGCAGCAGCAGCAACAGCAGCAACAG---CAGCA
droGri2 scaffold_3013:3983-4311 - AGCAGCAG---CG--GC--------------A-GCGG-CAGCGGCAGCAGCAG-CAGCAGCAGCGGCA-------------GCAGCAGCA--------------------------------------------------------------------GCAGCAGCA---GCTC---------------------------------TGGTCAGCAGCAGCAGCAGCTGCAGCA---GC------------------------------AG------------CAGCAGCAGCGGCAGCAGCA-----------------------------------------------GCAGCAGC---------------------------------AGCGGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCA-------GCGGCAGCAGCAGCAGCAGCAGCA-------GCAG--------CAGCAGCAGCGGCAGCAGCAGCAGC---------------------------------------------------------------GGCAGCGGCA----------------GCGGC--------------A---GCAG-----------------------------------------------------------------------------------------------CAG--------------------CAG------CAGCAGCAGCAGCGGCAGCAGCAGCA-----------------------------------------GCAG-------------CAGCAGCAG------------CAGCGGCAGCAGCA-------------G---------------CAGCAGCAGCAGCAGCAGCAGCAGCAG---CAGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCAGCAT---GT--CC----------------GCGT-GATCCGCGATGGCCGGCT--------------GTA-CGATGAAGCCACGGTG--------------------------------------------------------------------GTGGTGGCT---GCCCGTCGGCATTCGGTGTCGCCACC-CCACNANGCC---------------------------ACAAC------------------------------AGCAGCA--------------------------------------------------------------------------GCAGCATCAAGCGC---------------------------AGCAGCA---------GCATCAATC----------------------GCAT---------CAGCAGCATGTGATCGCCAGCGTTAG-------------TTCTAGCAG---C------AGCTCATC----GGCCATTGGATCGGGCGGCTCTTCTTCATCGCACATCTTTCGCACGCCCGTGGTTTCCAGCAGCAGCAG--------------------------------------------CAGCAATATTCACCACCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------A---------------TCGGTGATGCGGCCACCTCCGCCGCCG---CCGCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-------------A---------------TCGGTGATGCGGC......................1811.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................CGC---------------------------AGCAGCA---------GCATCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGC.................................................................19200.05110000000000000000
droSec2
T-------------------------------------------------------------------------C---GC----------AAGTTTGTGGTTAGCACCAGCACGCGACACGTTAATGTGATCGCCTCCAATCACTTTCAACA-------------------------------------------------------------------------------------AC------------------------------AGCAGCA--------------------------------------------------------------------------GCAGCATCAAGCGC---------------------------AGCAGCAG---------CATCAATC----------------------GCATCAGCAGCATCAGCAGCATGTGATCGCCAGCGTTAG-------------TTCTAGCAG---C------AGCTCATC----GGCCGTTGGATCGGGCGGATCTTCTTCTTCGCACATCTTTCGCACGCCCGTGGTTTCCAGCAGCAGCAG--------------------------------------------CAGCAATATGCACCACCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------A---------------TCGGTGATGCGGCCACCTCCGCCGCCG---CCTCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
AACAGTAC---ATCTCC--------------A-CTGGTGTTCC------------ACCACCCACGGCAGCGGCTC---GG----------AAGTTTGTGGTTAGCACCAGCACGCGACACGTTAATGTGATCGCCTCCAATCACTTTCAACA-------------------------------------------------------------------------------------AC------------------------------AGCAGCA--------------------------------------------------------------------------GCAGCACCAAGCACAGCAGCATC------------------AGCAGCAGCATCAGCAGCATCAGCA----------------------ACAT---------CAGCAGCATGTGATCGCCAGCGTTAG-------------TTCTAGCAG---C------AGCTCATC----GGCCATTGGATCAGGCGGCTCTTCTTCTTCGCACATCTTTCGCACGCCCGTGGTTTCCAGCAGCAGCAG--------------------------------------------CAGCAATATGCACCATCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------ATCGAGCCTGGGCAACTCGGTGATGCGGCCACCTCCGCCGCCG---CCTCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................CGTTAATGTGATCGCCTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGCGTTAG-------------TTCTAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCACCATCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAA........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................AATGTGATCGCCTCCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATGTGATCGCCAGCGTTAG-------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCCTGGGCAACTCGGTGATGCG........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................TAGCACCAGCACGCGACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTTTCGCACGCCCGTGGT..................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCATC------------------AGCAGCAGCATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCATCAGCAGCATCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------AT.................................................2140.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CAGCATC------------------AGCAGCAGCATCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21190.3770000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000103000
....................................................................................................................................................AACA-------------------------------------------------------------------------------------AC------------------------------AGCAGCA--------------------------------------------------------------------------GCAGCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCATCAGCAGCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA.........................................................................1880.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCATCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA............................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------ATCGC..............................................2160.1710000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TC------------------AGCAGCAGCATCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.1720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................AACA-------------------------------------------------------------------------------------AC------------------------------AGCAGCA--------------------------------------------------------------------------GCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003
....................................................................................................................................................AACA-------------------------------------------------------------------------------------AC------------------------------AGCAGCA--------------------------------------------------------------------------GCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------AT.................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGC....................................................................22110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAG..................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCATCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................ATC------------------AGCAGCAGCATCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................CA-------------------------------------------------------------------------------------AC------------------------------AGCAGCA--------------------------------------------------------------------------GCAGCACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAG--------------------------------------------CAGCAATA...............................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------A..................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................AC------------------------------AGCAGCA--------------------------------------------------------------------------GCAGCACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CAGCATC------------------AGCAGCAGCATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GG----------------------------------------------------------------------------------------AAGTTTGTGGTCAGCACCAGCACGCGGCACGTTAACGTGATCGCCTCCAATCACTTTCAGCA-------------------------------------------------------------------------------------AC------------------------------AG------------TCGCA------------------------------------------TCA-----------------GCAGCATCAGTCGC---------------------------ATCAGCAGCATCAGCAGCATCAGAC----------------------GCAT---------CAGCAGCATGTGATCGCCAGCGTTAG-------------TTCTAGCAG---C------AGCTCATC----GGCCATTGGATCGGGCGGCTCTTCTTCTTCGCACATCTTTCGCACGCCCGTGGTATCCAGCAGCAGCAGCA-----GCAGCGGC---AACAG------------------CAGCAGCAACATGCACCAACAGCAGCAG------------------------------------------------------------------------------------------------------CAGCAACAGCA---------------------------------------------------------------------------------GCAGCAGCAGCA-------------GTCGAGCCTGGGCAACTCGGTGATGCGGCCACCCCCGCCGCCG---CCTCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................G------------TCGCA------------------------------------------TCA-----------------GCAGCATCAGTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAG-------------TTCTAGCAG---C------AGCTCATC----GGCCATT.................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................GC---------------------------ATCAGCAGCATCAGCAGCATCAGAC----------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATCCAGCAGCAGCAGCA-----............................................................................................................................................................................................................................................................................................................................................2011.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATCAGCAGCATCAGAC----------------------GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA-------------GTCGAGCCTGGGC......................................2211.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCCAGCGTTAG-------------TTCTAGCAG---C------AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGCAACTCGGTGATGC.........................1811.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA-------------GTCGAGCCTGGG.......................................2211.0010010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAGCAGCAGCA-----GCAGCGG.....................................................................................................................................................................................................................................................................................................................................2220.5011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA-----GCAGCGGC---AACA.............................................................................................................................................................................................................................................................................................................................2470.1410100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----GCAGCGGC---AACAG------------------CAGCA.....................................................................................................................................................................................................................................................................................................20100.1010000100
...........................................................................................................................................................................................................................................................................................................................................................................C---------------------------ATCAGCAGCATCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG------------------------------------------------------------------------------------------------------CAGCAACAGCA---------------------------------------------------------------------------------GCAGC.......................................................................20200.0511000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAG------------------------------------------------------------------------------------------------------CAGCAACAGCA---------------------------------------------------------------------------------GCA.........................................................................25200.0510001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAG------------------------------------------------------------------------------------------------------CAGCAACAGCA---------------------------------------------------------------------------------GC..........................................................................24200.0510000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG------------------------------------------------------------------------------------------------------CAGCAACAGCA---------------------------------------------------------------------------------GCAGCA......................................................................21200.0510001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAG------------------------------------------------------------------------------------------------------CAGCAACAGC..............................................................................................................................................................20200.0511000000
droYak3
GG----------------------------------------------------------------------------------------AAGTTTGTGGTCAGCACCAGCACGCGACACGTCAACGTGATCGCCTCCAATCACTTTCAACA-------------------------------------------------------------------------------------AC------------------------------AG------------TCGCA------------------------TCA---------G--------TCGCATCAGCCGCATCAGCAGCATCAGTCGC---------------------------ATCAGCAGCATCAGCAGCATCAGTC----------------------GCAT---------CAGCAGCATGTGATCGCCAGCGTTAG-------------TTCTAGCAG---C------AGCTCATC----GGCCATTGGATCGGGCGCCTCTTCTTCTTCGCACATCTTTCGCACGCCCGTGGTATCCAGCAGCAGCAG--------------------------------------------CAGCAACATGCAACACCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------GTCGAGCCTGGGCAACTCGGTGATGCGGCCACCTCCGCCGCCG---CCGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGCCAGCGTTAG-------------TTCTAGCAG---C------....................................................................................................................................................................................................................................................................................................................................................................................................................................25117.0017000000000017
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGCCAGCGTTAG-------------TTCTAGCAG---G------....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001
...........................................................................................................................................................................................................................................................................................................................................................................C---------------------------ATCAGCAGCATCAGCAGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.13100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------...................................................21200.10200200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------...................................................22200.05101000000000
droEug1
AATA-CAT---CT--CC--------------A-GTGGTGTTGC------------ACCACCCACGGCAGCGGCTC---GA----------AAATTTGTGGTTAGTACCAGCACGCGACACGTAAACGTGATTGCCTCCAACCACTTTCAG----------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------GCAACATCAATCGC---------------------------AGCAGCA---------ACATCCGGC----------------------GCAT---------CAACAAAATGTGATCGCCAGTGTTAG-------------TTCTAGTAG---T------GGCTCCTC----GTCCTCGGGACCAGCCGGCTCTTCTTCTTCGCACATCTTTCGCACGCCTGTCGTATCTAGCAGCAGCAGCA-----GCAGCAGCGGCAACAGCAACAACAACATTGCGCACAGCAGCAACATGCACCATCAGCAGCAA------------------------------------------------------------------------------------------------------CAGCAA------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------ATCGAACCTGGGCAACACGGTGATGCGGCCACCACCGCCACCG---CCTCCSizeHit CountTotal NormTotal
No Reads
droBia1
AGCAATAT---GTCTCC--------------A-GCGGTGTTGC------------ACCGCCCACGGCAGCGGCTC---GG----------AAGCTGGTGGTTAGCACCAGCACGCGTCACGTGAACGTGATCGCCTCCAATCATTTCCAG----------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------GCAGCATCAGGTGC---------------------------AGCAGCAG---------CACCAGCC----------------------GCATCAGCAGCATCAGCAACATGTGATTGCCAGCGTTAG-------------TTCTAGCAG---T------GGCTCCTC----G------GGAGCAGCCGGCCCTTCTTCTGCGCACATCTTCCGCACGCCCGTGGTATCCAGCAGCAGCAGCA-----GCAACAGC---------------AACATGGCGCACAGCAGCAACATGCACCACCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCA-------------GGCGAACCTGGGCAGCTCGGTGATGCGGCCACCACCGCCGCCG---CCTCCSizeHit CountTotal NormTotal
No Reads
droTak1
CA----------------------------------------------------------------------------GG----------AAGTTTGTGGTTAGCACCAGCACGCGACACGTAAACGTGATTGCCTCCAATCATTTCCAG----------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------GCAACATCAGTCGC---------------------------AGCAGCAG---CAGCAACATCAGTC----------------------GCATCAGCAACACCAGCAACATGTGATTGCCAGCGTTAG-------------TTCTAGTAG---T------GGCTC----------------------CGGCTCTTCTTCTTCGCACATCTTTCGCACGCCCGTGGTATCCAGCAGCAGCAGCA-----GCAACAGC---GGTGG------------------CAACAGCAACATGCACCACCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGCA-------------ATCGAACCTGGGCAACTCGGTGATGCGGCCACCACCGCCGCCG---CCTCCSizeHit CountTotal NormTotal
No Reads
droEle1
T-------------------------------------------------------------------------C---GC----------AAGTTTGTGGTTAGCACCAGCACGCGACACGTGAACGTGATTGCCGCGAATCAGTTTCAA----------------------------------------------------------------------------------------------------------------------------CA--------------------------------------------------------------------------GCAACATCAATCGC---------------------------AGCAGC---ATCAGCAACATCAGTC----------------------GCAT---------CAGCAACATGTGATTGCTAGCGTTAG-------------TTCTAGTAG---T------AGCTCCT----------TGGGATCAGCCGGCTCTTCTTCTTCGCACATCTTTCGCACGCCCGTGGTATCAAGCAGCAGCAGCA-----GCAGCAGTGCCAACAGCAAC---AACATTGGGCACAGCAGCAACATGCATCACCAGCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCATCA-------------ATCGAACCTGGGCAACTCGGTGATGCGGCCACCACCGCCGCCG---CCTCCSizeHit CountTotal NormTotal
No Reads
droRho1
AGCAACAT---GT--CC----------------GTGT-GATCCGCGATGGCCGCCT--------------GTA-CGATGAAACCACTGTG--------------------------------------------------------------------GTGGTGGCT---ACCCGTCGGCATTCGGTGTCGCCACCACCACTGCACC---------------------------ATCACTCCCGATCGGCGCCTGTATCGCCGGTGATTGCTAGGC--------------------------------------------------------------------------GTGGTG------------------------------------------------------------------GTGCTGCTGCCTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGATCAGCAGTATCAGCAAAGGCAGACGCCACCGCTGGCACCACCGCCGCCGCCTCCTCCACCCCCGCCTCCACCACCACCACCAC---AA---------------------CAGCA---ACAACAACAGCAGC---------AGCAACAA-----------------TACATCTCC----------------------------------------------------------------------AGTGGTGTTGC-ACCACCCACGGCA---GCGGCSizeHit CountTotal NormTotal
No Reads
droFic1
AGCAGCAGTACATCTCC--------------A-GCGGGGTGGC------------ACCACCCACGGCAGCGGCTC---GG----------AAGTTTGTGGTTAGCACCAGCACGCGACACGTGAACGTGATTGCCGCGAACAGCTTCCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACATGTGATCGCCAGCGTTAG-------------TTCGAGCAG---T------GGCGCCTC----CTCCGTTGGGGCATCGGGCTCCTCCGCTTCGCACATCTTCCGCACGCCAGTGGTTTCAAGCAGCAGCAGCA-----GCAGCAGC---------------------------AGTGGCAACTTGCACCACCACCAGCAG------------------------------------------------------------------------------------------------------CAGCAACAGCT-----------------------------------------GCAG----------------------------------CAGCAGCAGCAACA-------------GGCGAACCTGGGCAACTCGGTGATGCGGCCCCCACCGCCACCG---CCTCCSizeHit CountTotal NormTotal
No Reads
droKik1
GGCT----------------------------------------------------------------------C---GC----------AAGTTTGTGGTCAGCACTAGCACGCGACATGTAAACGTGATTGCCGCCAATCACTTCCAGCA----------------------------------------------------------------------------------ACAAC------------------------------AGCAGCA--------------------------------------------------------------------------GCAACACCAACAGC---------------------------AGCAGCA---------ACATC----------------------------AC---------CAGCAGCATGTGATTGCCAGTGTTAG-------------CTCTAGTAG---T------GGTTCC-------CCCAGTGGCTCCGCCAGCTCTTCTTCTGCCCACATCTTTCGCACGCCCGTGGTGTCCAGCTCTAGCTCTA-----GCTCCAGTTCGAGTTC------------------CAGCAGCAATCTGCAACACCACCAGCAA------------------------------------------------------------------------------------------------------CATCAGCAGCA--------------------------------------------G----------------------------------CAGCAGCAACAGCC-------------ACAGAATCTGGGCAGCTCGGTGATGCGGCCACCACCGCCTCCG---CCACCSizeHit CountTotal NormTotal
No Reads
droAna3
AGCAACAT---GT--GC----------------GGGT-GATACGCGACGGGCGACT--------------GTA-CGATGAAGCCACTGTG--------------------------------------------------------------------GTGGTGGCA---GCTCGCAGGCACTCGGTGTCGCCACCACCGCTGCACC---------------------------ACCACTCGAGATCGGCGCCCGTTTCCCCGGTGATCGCCAGGA--------------------------------------------------------------------------GAAGCGTCTA---------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGAGCAGCAGTATCAGCAGCGACAGACGCCGCCCTTGGCGCCTCCTCCGCCCCCACCTCCGCCGCCACCTCCGCCACCGCCCCCCC------------A---------------------GCAACAGCAGCAGC---------AACAACAG-----------------TACATCTCAAGCGGAGTGCCACCACCCACAGCAGCGGCTAGAAAGTTTGTGGTTAGCACCAGT--------------------A------------------CG---CGGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCTCCGCCACCGCCCCCC...................................................................................................................................................................................................2211.001000001
....................................................................................................................................................................GCA---GCTCGCAGGCACTCGGTGTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....................................................................................ACTGTG--------------------------------------------------------------------GTGGTGGCA---GCTCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................................................................................................................................................................................................................................................................................................................................................GAAGCGTCTA---------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGAGCAGC................................................................................................................................................................................................................................................................................2111.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTAGAAAGTTTGTGGTT..........................................................1911.001000001
..................................................GCGACT--------------GTA-CGATGAAGCCACTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGTATCAGCAGCGACAGACGCC..........................................................................................................................................................................................................................................................2611.001000010
AGCAACAT---GT--GC----------------GGGT-GATACGCGACGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC---------AACAACA..................................................................................................................................19200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------A---------------------GCAACAGCAGCAGC---------AACA.....................................................................................................................................20200.051000001
droBip1
AGCAACAT---GT--GC----------------GGGT-GATACGCGACGGGCGACT--------------GTA-CGATGAAGCCACTGTG--------------------------------------------------------------------GTGGTGGCA---GCTCGCAGGCATTCGGTGTCCCCACCACCGCTGCACC---------------------------ACCACTCGCGATCGGCGCCCGTCTCCCCGGTGATCGCCAGAA--------------------------------------------------------------------------GAAGCGGCGGG------------------------------------------------------------------------TAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGAGCAGCAGTATCAGCAGCGCCAGACGCCGCCCTTGGCACCTCCTCCGCCCCCACCTCCGCCACCACCTCCACCACCGCCCCCACAACAACAAC------------------------AGCA------GCAGCAACAACAGCAGCAGCAA-----------------TATATCTCT----------------------------------------------------------------------AGTGGTGTGGCA-CCAC--CCACTG---CAGCASizeHit CountTotal NormTotal
No Reads
dp5
AGCAGAAC---AC--GTACTACGAATTCAACAAGT-GGAATGC------------ACCGCTTAAGACGGAGAA-CAATGCGGCCTCTGTGTCGCCGGCGGCCACCATCAACATAC---------------------CCA------------------------------------------------------------------------------------------------------------------CATATCCCCA-------------------------------------------------GCA---------G--------ACGCAGCAGCAGCAACAGCAGCACCA------------------------------------------------AAGCCAGCA----------------------GCAGCAGCAGCACCTGCCGCA-------GCCG--------GCCCATCTGCAGTCCTCGCAGGCACAATCACATCTCACCCAGCTGGCGCAATATTATCCAGCCTTCCCCCAGCCCATTG-CCTCGCAGTACACGGCGTGCATGCAGCAGCAGCA-----GCAACAGC----------------------------------------AACAGCAGCAACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCA-------------------------------------GCAAGCATATACGCAACAG---CAGCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................TAAGACGGAGAA-CAATGCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTG-CCTCGCAGTACACGC....................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACACGGCGTGCATGCA..........................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................................................................CAATGCGGCCTCTGTGTCGCCGGCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
..............................................................AAGACGGAGAA-CAATGCGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCCTCGCAGGCACAATCACATCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
...............................................................................................................................................................................................................................................................................................................................................................CAGCACCA------------------------------------------------AAGCCAGCA----------------------GCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCA-------GCCG--------GCCCATCTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCG--------GCCCATCTGCAGTCCTCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000001
........................................TGC------------ACCGCTTAAGACGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...........................................................CTTAAGACGGAGAA-CAATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000001
.................................GT-GGAATGC------------ACCGCTTAAGACGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
........................................................CCGCTTAAGACGGAGAA-CAATGCGGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001000000
...................................................................................................................................................................................................................................................................CCCA-------------------------------------------------GCA---------G--------ACGCAGCAGCAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCA-------------------------------------GCAAGCATA..................2411.0010000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA-------------------------------------GCAAGCAT...................2030.3310000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGC.................................................................21200.2040400000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA-----GCAACAGC----------------------------------------AACAGCAGCAACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C.............................................................................2880.1310001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GCAACAGC----------------------------------------AACAGCAGCAACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C.............................................................................26100.1010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCA-------------------------------------GC.........................20200.1020200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCA-------------------------------------G..........................28100.1010000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA-----GCAACAGC----------------------------------------AACAGCAGCAAC................................................................................................................................................................................................................................................................................28170.0610010000000
..............................................................................................................................................................................................................................................................................................................................................CGCAGCAGCAGCAACAGCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20190.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCA-------------------------------------GC.........................21200.0510000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCA-------------------------------------...........................23200.0510000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA-----GCAACAGC----------------------------------------............................................................................................................................................................................................................................................................................................19200.0510000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCA-------------------------------------G..........................19200.0510100000000
..................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCA-------------------------------------GCA........................22200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA-----GCAACAGC----------------------------------------AACA........................................................................................................................................................................................................................................................................................20200.0510100000000
droPer2
AGCAGCAT---GT--GC----------------GGGT-CATCCGGGATGGTCGGCT--------------GTA-CGATGAAGCCACTGTG--------------------------------------------------------------------GTGGTTGGTGGGGCACGTCGTCTGTCCGTGTCGCCGCCACCGCTCCACC---------------------------ATCACTCGCGCTCTGCGCCCGTGTCCCCCGTGATCAACAGAC--------------------------------------------------------------------------GTGGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGCAGGT---------------ACCACCGTGTCCGGTGGCTACATGGATCAGCAGCAGCAATATCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCGCCAGACGCC-------------A---------------CCATTGGCGCCGCCACCACCGCCTCCA---CCGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AGCAGCAT---CT--TC--------------A-TCAT-CATCCTAG------------------------------------------------------------CCATCAC-------------------------AGTCAGACGCAGCA----------------------------------------------------------------TCAGCAGCTGTCACAGCA--------------------------------------------------------------------------------------------------------------------GCAGCAACAACAAC---AGCAGCAACAGCAACAACAACAGCAGCAGCA---------ACATCAACA----------------------GCAT---------CA-------------GCCAGCGC-AT-------------CACCTGCAA---C------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAGCAGCCATCTCATCATCCACTTCCTCACACACCGCACCCGCTTCATCATC---------------------A--AACAACAGCAACAGC---------AGCAGCTCTGCAACATCAACTGCAA----------------------------------CCGCAACAACAACA-------------GC-------------------GTGGCGGCGG--ACTGCCTGGAGCGCCGCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................AG------------------------------------------------------------CCATCAC-------------------------AGTCAGACGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00330000
....................................................................................................................................................AGCA----------------------------------------------------------------TCAGCAGCTGTCACAGCA--------------------------------------------------------------------------------------------------------------------G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.......................................................................................................................................................A----------------------------------------------------------------TCAGCAGCTGTCACAGCA--------------------------------------------------------------------------------------------------------------------GC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACA----------------------GCAT---------CA-------------GCCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------ACATCAACA----------------------GCAT---------CA-------------GCCAGCGC-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
...AGCAT---CT--TC--------------A-TCAT-CATCCTAG------------------------------------------------------------CC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.GCAGCAT---CT--TC--------------A-TCAT-CATCCTAG------------------------------------------------------------C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACA-------------GC-------------------GTGGCGGC......................2111.00101000
..................................CAT-CATCCTAG------------------------------------------------------------CCATCAC-------------------------AGTCAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGG--ACTGCCTGGAGCGCCGC.2311.00100010
..............................................................................................................................................AGACGCAGCA----------------------------------------------------------------TCAGCAGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100010
...................................................................................................................................................................................................................................CACAGCA--------------------------------------------------------------------------------------------------------------------GCAGCAACAACAAC---AGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.33100010
........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------ACATCAACA----------------------GCAT---------CA-------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.20100100
..................................................................................................................................................................................................................................................................................................................................................................CAACAACAAC---AGCAGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.15300030
....................................................................................................................................................................................................................................ACAGCA--------------------------------------------------------------------------------------------------------------------GCAGCAACAACAAC---AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.15300030
...................................................................................................................................................................................................................................................................................................................................................................AACAACAAC---AGCAGCAACAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200020
..................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAACAACAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10202000
..........................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAGCA---------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200020
..........................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAGCA---------AC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10200020
....................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA---------ACATCAACA----------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.10200011
...........................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGCA---------ACATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.09100010
...................................................................................................................................................................................................................................................................................................................................................................AACAACAAC---AGCAGCAACAGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGCA---------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
...................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAACAACAACAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAGCA---------ACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100001
..................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAACAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAGCAGCA---------ACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
.........................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
........................................................................................................................................................................................................................................................................................................................................................................CAAC---AGCAGCAACAGCAACAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
.........................................................................................................................................................................................................................................A--------------------------------------------------------------------------------------------------------------------GCAGCAACAACAAC---AGCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
........................................................................................................................................................................................................................................................................................................................................................................CAAC---AGCAGCAACAGCAACAACAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
....................................................................................................................................................................................................................................................................................................................................................................ACAACAAC---AGCAGCAACAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------ACATCAACA----------------------GCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
....................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA---------ACATCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
droVir3
AGCAGCAA---CA--TC--------------A-ACAA-CAGCCGCTGCAGCAG-CAGCACCAACAACA-------------GCCACCGTA--------------------------------------------------------------------GCAGCCGCT---GCA-------------------------------------------GCTTCAGCAGTCGCAGCA---GC------------------------------AG------------CA-------------CAGCAACATCAACAGCAACAGCAACAGCCGCAGCA-----------------GCAGCA---------------------------------------------------GCAGCAGCAGCAGCAGCAGCAGTAATTAGCTGCAGCAGCAGCAGCAGCAGCA-------GCAG----TAATTAGCTGCAGCAGCAGCAGCCGCAGC---------------------------------------------------------------AGCAGCAGCA----------------GCCGC--------------A----------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCCGCAG------CAGCA------------------------GCAGCAGCAG-----------------TAGTAATTAGCTGCAGCAGCAA------------CAGCCGCAGCAGCA-------------G---------------CAGCAGCCGCAGCAGCAGCCGCAGCAG---CAACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................CAACA-------------GCCACCGTA--------------------------------------------------------------------GCAGCCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
..................................CAA-CAGCCGCTGCAGCAG-CAGCACCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
..................................................................CA-------------GCCACCGTA--------------------------------------------------------------------GCAGCCGCT---G......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
...................................................AG-CAGCACCAACAACA-------------GCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
......................................CAGCCGCTGCAGCAG-CAGCAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................ACAACA-------------GCCACCGTA--------------------------------------------------------------------GCAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGCAGCAA------------CAGCCGC.......................................................................1950.201000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ACAGCAACAGCCGCAGCA-----------------GC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------A----------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCCGCAG------........................................................................................................................................................................21200.153003000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------------------------------------------------------------AGCAGCAGCA----------------GCCGC--------------A----------------------------------------------------------------------------------------------------------------------------G................................................................................................................................................................................................21200.153003000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA-------------G---------------CAGCAGCCGCAG.......................21200.153003000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGC--------------A----------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCCGC................................................................................................................................................................................2390.111001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAGC---------------------------------------------------------------AGCAGCAGCA----------------GCCGC--------------..............................................................................................................................................................................................................................................................................................................................2390.111001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAGCAGCA-------------G---------------CAGCAGCCGC.........................2390.111001000000000000000000000000000000000000000000000000000000000000
AGCAGCAA---CA--TC--------------A-ACAA-CAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.111001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAA------------CAGCCGCAGCAG..................................................................21110.091000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAA------------CAGCCGCAGCAG..................................................................20140.071000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................A-------------CAGCAACATCAACAGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20150.071001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCCGCAGCAGCAGCCG..............21160.061001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................ATCAACAGCAACAGCAACAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.061001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGCAGCAGCCGCAGCAG---C....22180.061000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------GCAGCAGCAGCAGCAGCAGCAGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCGCAGCAGCAGCC...............19200.051000000000000000000001000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCCGCAG------CAGCA------------------------GCAGCA.....................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCA-------GCAG----T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA-------------G---------------CAGCAGCCGCAGCA.....................20200.051000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCGCAGCAGCAGC................18200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CAACATCAACAGCAACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------CAGCCGCAGCAGCA-------------G---------------CAG................................20200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCGCAGCAGCAGCCGCAG...........21200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCCGCAG------CA......................................................................................................................................................................20200.051000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------CAGCCGCAGCAGCA-------------G---------------CAGC...............................21200.051000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................AGCAACATCAACAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCGCAGCAGCAGCCGCAGC..........21200.051001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CA-----------------GCAGCA---------------------------------------------------GCAGCAGCAGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCGCAG------CAGCA------------------------GC.........................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------------------------AGCAGCAGCA----------------GCCGC--------------A----------------------------------------------------------------------------------------------------------------------------GCA..............................................................................................................................................................................................20200.051000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCCGCAGC---------------------------------------------------------------A..........................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCCGCAGC---------------------------------------------------------------AGCAGC.....................................................................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA----------------GCCGC--------------A----------------------------------------------------------------------------------------------------------------------------GCAGCAGC.........................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCCGCAGC---------------------------------------------------------------AG.........................................................................................................................................................................................................................................................................................................................................................................21200.051000001000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAGCAGCAGCCGCAGCAG---.....21200.051000000000000000000000010000000000000000000000000000000000000000
droMoj3
AGCAGCAA---CA--GC--------------A-GCAG-CAGCAGCAACAGCAG-TA------------------------------------------------------------------------------------GCAGCAGCAGCAACAGCAGCAG----------------------------------------------------------------------------------------------------------------CAGCAACAGCGGCAGCAGCAGCAACAGCAACAGCAGCAGCA---------G--------CAGCAACAGCAGCAACAGCAGCAGCA------------------------------------------------GCAACAGCA----------------------GCAGCAGCAGCAACAGCAGCA-------GCAG--------CAGCAACAGCAGCAGCAGCAGCAAC---------------------------------------------------------------AGCAGCAGCA----------------ACAGC--------------A---GTAG-----------------------------------------------------------------------------------------------CAG--------------------CAG------CAGCAACAGCAGCAGCAGCAACAGCA-----------------------------------------GCAG-------------CAGCAGCAA------------CAGCAACAGCAGCA-------------G---------------CAGCAGCAGCAGCAACAGCAGCAACAG---CAGCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCA-------------G---------------CAGCAGCA...........................19200.204400000
..............................................................................................................................................................................................................................................................................................................AACAGCAGCAGCA---------G--------CAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.204400000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA-------------G---------------CAGCAGCAGCA........................20200.102020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCA-------------G---------------CAGCAGCAGCA........................25200.102200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCAGCA-------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102200000
...............................................................................................................................................................CAG----------------------------------------------------------------------------------------------------------------CAGCAACAGCGGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22130.081000010
...................................................................................................................................................................................................................................................................................AGCAACAGCGGCAGCAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22140.071000010
..................................................................................................................................................................................................................................................................................CAGCAACAGCGGCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22180.061000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGCAGCAAC---------------------------------------------------------------AGC........................................................................................................................................................................................................................................................................................................................................................................27200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAGCAACA................................................................................................................................................................21200.051100000
.................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAACAGCAGCAGCA------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
...................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCAGCAGCA------------------------------------------------G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCA-----------------------------------------GCAG-------------CAGCAGCAA------------CAGC..........................................................................27200.051100000
...AGCAA---CA--GC--------------A-GCAG-CAGCAGCAACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
........................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAGCA---------G--------CA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
...................................................................................................................................................................................................................................................................................AGCAACAGCGGCAGCAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
......................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------GCAACAGCA----------------------GCAGCAGCAGCAACAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCA-------GCAG--------CAGCAACAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
.....................................................................................................................................................GCAACAGCAGCAG----------------------------------------------------------------------------------------------------------------CAGCAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAGCAGCAA...........22200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------------------------------------------------------AGCAGCAGCA----------------ACAGC--------------A---..........................................................................................................................................................................................................................................................................................................................19200.051010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------CAGCAACAGCAGCA-------------G---------------CAGCA..............................22200.051000010
droGri2
AGCAGCAG---CG--GC--------------A-GCGG-CAGCGGCAGCAGCAG-CAGCAGCAGCGGCA-------------GCAGCAGCA--------------------------------------------------------------------GCAGCAGCA---GCTC---------------------------------TGGTCAGCAGCAGCAGCAGCTGCAGCA---GC------------------------------AG------------CAGCAGCAGCGGCAGCAGCA-----------------------------------------------GCAGCAGC---------------------------------AGCGGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAGCA-------GCGGCAGCAGCAGCAGCAGCAGCA-------GCAG--------CAGCAGCAGCGGCAGCAGCAGCAGC---------------------------------------------------------------GGCAGCGGCA----------------GCGGC--------------A---GCAG-----------------------------------------------------------------------------------------------CAG--------------------CAG------CAGCAGCAGCAGCGGCAGCAGCAGCA-----------------------------------------GCAG-------------CAGCAGCAG------------CAGCGGCAGCAGCA-------------G---------------CAGCAGCAGCAGCAGCAGCAGCAGCAG---CAGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCAGCAG---CA...25200.10220
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGGCAGCAGCAGCAGC---------------------------------------------------------------GGC........................................................................................................................................................................................................................................................................................................................................................................22200.05101

Generated: 05/18/2015 at 01:24 PM