ID:

dsi_22719

 Coordinate:

3l:11422909-11423058 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.3 -5.1 -5.1 -4.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATTACTCACGGCCGGCCAAAAATAAATTGTTTGTTGTGGCGACACGTTTAATCAGTCGGTAAACTTTGCCCGCCAGCCAAATCATTAGCTATCTGATATTGATCCCAAGTCATAGTTCACTTCAATAGATTACATAGTCTCAAATCGATTTTTACTATGGGTTTTATTGCATTTTGATAATTCAAATAATTTTGTTATAGTATTTGGCCAGCAGTTTTGAGACAGGCGACCTATGGCACCATCAAGTTTG
****************************************************..........................................((..(((....))).))******************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 O001
Testis
 O002
Head
 SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
......................TAAATTGTTTGTTGTGGCGAC............................................................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
....................................................CAGTCGGTAAACTTTGCCCGC................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TCTGATATTGATCCCAAGTC........................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGCAGTTTTGAGACAGGCGACCT.................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................CGTTTAATCAGTCGGTAAACTTTGCC.................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGCAGTTTTGAGACAGGC....................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TCTCAAATCGATTTTTACTA............................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TGAGACAGGCGACCTATGGCA............ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................TTGAGACAGGCGACCTATGGCACCAT........ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............................GTTTGTTGTGGCGACACG............................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................CGTTTAATCAGTCGGTAAACT......................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CTAAGGCACCATCAA..... 15 1 4 0.50 2 0 0 0 0 0 0 0 0 0 2 0 0
..............................................................................................................................................................................................................TCCAGCAGTCGTGAGACAGG........................ 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CTTTGGCACCATCAA..... 15 1 20 0.25 5 0 0 0 0 0 0 0 0 5 0 0 0
.....................................................................................................................................................................................................................................CTTAGGGCACCATCAA..... 16 2 20 0.20 4 0 0 0 0 0 0 0 0 4 0 0 0
......................................................................................................................................................................................................................................CTCTGGCACCATCAA..... 15 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................AGCAGTCGTGAGACAGG........................ 17 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................ATGGCACCGTCAAGT... 15 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................GCAGTCGTGAGACAGGC....................... 17 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GTTGTGAGACAGGCGCC.................... 17 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CTTAGGCACCATCAAG.... 16 2 20 0.10 2 0 0 0 0 0 0 0 0 1 1 0 0
................................................................................................................................................................................................................CAGCAGTCGTGAGACAG......................... 17 2 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TACCCATGGCACCTTCAAG.... 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................CCAGCTGTCGTGAGACAGG........................ 19 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ACAGCAGTCGTGAGACAGG........................ 19 3 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................GCTGTCTTGAGACAGG........................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
AGTACGCACGGCCGG........................................................................................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................TTTATTGGATTTTGAT........................................................................ 16 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................CGAGCTGTTGTGAGACAG......................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAATGAGTGCCGGCCGGTTTTTATTTAACAAACAACACCGCTGTGCAAATTAGTCAGCCATTTGAAACGGGCGGTCGGTTTAGTAATCGATAGACTATAACTAGGGTTCAGTATCAAGTGAAGTTATCTAATGTATCAGAGTTTAGCTAAAAATGATACCCAAAATAACGTAAAACTATTAAGTTTATTAAAACAATATCATAAACCGGTCGTCAAAACTCTGTCCGCTGGATACCGTGGTAGTTCAAAC
*******************************************************************************************************************************************..........................................((..(((....))).))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR1275487
Male larvae		 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
....................................................................................................CTAGGGTTCAGTATCAAGTGA................................................................................................................................. 21 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0
......................................................................................................GGGGGTCAGTATCAAGTAAAGT.............................................................................................................................. 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TCAGAGTTTAGCTAAAAATG............................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................TGTGCAAATTAGTCAGCCATT............................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................CAACACCGCTGTGCAAATTAGT.................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................GGCAAATTAGTCAGCCATTT........................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................TGCAAATTAGTCAGCCATTTT.......................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TTCACTATCAAAGGAAGTTAT........................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0
....................................................................GGGGGGTCGGGTTAGTCATCG................................................................................................................................................................. 21 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.......................................GCTCTGCAGATTAGTAAGC................................................................................................................................................................................................ 19 3 4 0.25 1 0 0 0 0 0 0 1 0 0 0
.......................................GCTGTGCAGGTTAGTCAGCCG.............................................................................................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0
...........................................................ATTTGAAACGGGAGGTGGCTT.......................................................................................................................................................................... 21 3 13 0.15 2 0 0 0 0 0 0 0 2 0 0
..........................................CTGCAACTTGGTCAGCCA.............................................................................................................................................................................................. 18 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................AAAAGTATTAAGTCTGTTAAAA......................................................... 22 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0
..AAGAGTGCTGGCCGGT........................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.....................................................ACAGCCATTTGAATCGGT................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 07:03 AM