dsi_22702

exon [2l_12066080_12066247_-]; CDS [2l_12066080_12066247_-]; intron [2l_12066248_12078011_-]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GACCTTCAAGCGAAAGAGAGATGGAAAAAATTATGCAAAGCAAAGATTGCGTAATCAGCGTTAATGAGGCAGGCAAAAGGGTTCTTTTAACCGCTGATTTGGCTAATTCAATCCAATTTTCGACGGCCAATTTGGCTCTTAATGATGACTAACAGTGCTTAATTTCTACTGAAATAACTTTTTCTGTCTTTGCATTTCAGCGCGCAACGATCCACAGGACGATGCGGAGGTGATTAAAGTACCATCACGC ************************************************.......(((.....((((((((.(((((((((.....))))(((((.((((((...((............)).)))))).)))))......(((..(((...)))..)))(((((....)))))..)))))))))))))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo
.....................................................................................................................................................................................................................ACAGGACGATGCGGAGGTGATT...............	22	0	1	2.00	2	2	0	0	0
.........................................................................................................................................................................................................GCGCAACGATCCACAGGACGATGC.........................	24	0	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................GCAACGATCCACAGGACGATG..........................	21	0	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................GCGCGCAACGATCCACAGGAC..............................	21	0	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................AACGATCCACAGGACGATGCGGAGG....................	25	0	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................CAACGATCCACAGGACGATGC.........................	21	0	1	1.00	1	0	0	0	1
.....................................................................................................................................................................................................................ACAGGACGATGCGGAGGTGATTAAAG...........	26	0	1	1.00	1	0	1	0	0
..........................................................................AAATGGGTTTTTGTAACCGCT...........................................................................................................................................................	21	3	8	0.13	1	0	0	1	0

CTGGAAGTTCGCTTTCTCTCTACCTTTTTTAATACGTTTCGTTTCTAACGCATTAGTCGCAATTACTCCGTCCGTTTTCCCAAGAAAATTGGCGACTAAACCGATTAAGTTAGGTTAAAAGCTGCCGGTTAAACCGAGAATTACTACTGATTGTCACGAATTAAAGATGACTTTATTGAAAAAGACAGAAACGTAAAGTCGCGCGTTGCTAGGTGTCCTGCTACGCCTCCACTAATTTCATGGTAGTGCG ************************************************.......(((.....((((((((.(((((((((.....))))(((((.((((((...((............)).)))))).)))))......(((..(((...)))..)))(((((....)))))..)))))))))))))))).......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
..........................................................................................................................................................................................................GCGTTGCTAGGTGCGCTGC.............................	19	2	2	0.50	1	1	0	0	0	0
..............................................................................................................................................CCTACTGCTTGTCACGAA..........................................................................................	18	2	4	0.25	1	0	1	0	0	0
....................................................................................................................................................................AGACGACTTTATTGA.......................................................................	15	1	18	0.06	1	1	0	0	0	0
.......................................................................................................................................................................................................CGCGCGCTGCTAGGAG...................................	16	2	19	0.05	1	0	0	1	0	0
.......................................................................................ATTTTCGACTAAACTGATTA...............................................................................................................................................	20	3	20	0.05	1	0	0	0	1	0
................................................................................................................AGTTAAAAGCTGCGGGT.........................................................................................................................	17	2	20	0.05	1	1	0	0	0	0
.......................................CGTTTCTAACGAGTTAG..................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	0	1
....................................................................................................................................................................................................................ATGTCCTGCTACGCCG......................	16	2	20	0.05	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:12066198-12066447 -	dsi_22702	GAC-------CTT-CAAGCGAAA-GAG-AGATGGAAAAAATTATGCA-AAGCAAA-GAT-TGCGTAATCAGCG-TTAATGAGGCAGGCA-AAAG------------GGTTC-----------------------------------------------TTTT-----AACCGCTGATTTGGCTAATTC-AATCC-AA-TTTTCGA-CGGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGT------G---------CTTAATTTCTACT--------------------------GAA----------------ATAACTTTTTC---TGTCT---------------------T--TGCA-TTTCAGCGCGCAACGATCCACAGGACGATGCGGAGGTGATTAAAGTACCAT-----CACGC
droSec2	scaffold_16:600318-600567 -		GAC-------CTT-CAAGCGAAA-GAG-AGATGGAAAAAATTATGCA-AAGCAAA-GAT-TGCGTAATCAGCG-TTAATGAGGCAGGCA-AAAG------------GGTTC-----------------------------------------------TTTT-----AACCGCTGATTTGGCTAATTC-AATCC-AA-TTTTCGA-CGGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGT------G---------CTTAATTTCTACT--------------------------GAA----------------ATAACTTTTTC---TGTCT---------------------T--TGCA-TTTCAGCGCGCAACGATCCACAGGACGATGCGGAGGTGATTAAAGTACCAT-----CACGC
dm3	chr2L:12409574-12409823 -		GAC-------CTT-CAAGCAAAG-GAT-AGATGGAAAAAATTATGCA-AAGCAAA-GAT-TGCGTAATCAGCG-TTAATGAGGCACGCA-AAAG------------GGTTC-----------------------------------------------TTTT-----AACCGCTGATTTGGCTAATTC-AATCC-AA-TTTTCGA-CGGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGT------G---------CTTAATTTCTACT--------------------------GAA----------------ATAACTTTTTC---TGTCT---------------------T--TGCA-TTTCAGCGCGCAACGATCCACAGGACGATGCGGAAGTGATTAAAGTACCAT-----CACGC
droEre2	scaffold_4929:13006608-13006847 +		GAC-------CTT-CAAGCGAAA-GAG-AGATGGGAAAAATGATGCA-AAGCAAA-GAT-TGCGTAATCAGCG-TTAATGGGGCAGGAA-AAAG------------GGTTC-----------------------------------------------TTTT-----TACCGCTGATTTGGCTAATTC-AATCC-AG-TTTTCGC-CAGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGT------G---------CTTAATTTCTACT--------------------------GAA----------------ATAACTTTTTC---TGTCT---------------------C--TTCA-TTTCAGCCCGCAACGACCCACAGGATGATACAGAGGTGGATAAAGT---------------
droYak3	2L:8845547-8845796 -		GAC-------CTT-TAAGCAAAA-GGG-AGATGGAAAAAATTATGCA-AAGCAAA-GAT-TGCGTAATCAGCG-TTAATGAGGCAGGCA-GAAG------------GGTTC-----------------------------------------------TTTT-----AACCGCTGATTTGGCTAATTC-AATCC-AA-TTTTCAC-CAGCCAATTTG-------------------------------------------GCT--CCTAATGATG-ACTAACAGT------G---------CTTAATTTCTATA--------------------------GAA----------------ATAACTTTTTC---TGTCT---------------------T--TTCA-TTTCAGCTCGCAGCGACCCGCAGGACGATGCAGAGGAAATTAAAGTACCAT-----CACGC
droEug1	scf7180000409122:795953-796207 -		C---------CAC-CGACCAAAACGGG-AGACGG-AAAAATTATGCA-AAGTAAA-GAT-GGCGTAATCAGCG-TTAATGAGGCAGGCAAAAAG------------GGGTC-----------------------------------------------GTT------TCCTGCTGATTTGACTAATTC-AATCC-AA-TTTTCAC-CAGGCAATTTG-------------------------------------------CCT--CTTAATGATGGACTAACAGT------A---------TTTAATTCCCACT--------------------------GAA----------------ATAACCTTCTC---CCTTTTTCT-------TA--------T--TACT-TTTCAGCTCGCAACGACCCGCAGGATGATGCGGAGGTGATTAAAGTGCCCT-----CAAGG
droBia1	scf7180000302422:570219-570458 +		--C-------CTT-CGACGAAAG---G-AGAAGG-AAAAATTATGCA-AAGCAAA-GAC-TGCGTAATCAGCG-TTAATGAGGCAGGAA-AAAG------------GGGTC-----------------------------------------------GTT-------TCCGCTGATTTGGCTAATTC-AATCC-CA-TTTTCGC-CAGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGC------G---------TTTAATTTGTACT--------------------------GAA----------------ACAACCTTTTC---TTG--------------------------CTGC-TTTCAGCTCGCAACGACCCGCAGGACGATGCGGAGGTGATTAAAGTGCCAT-----CACGC
droTak1	scf7180000415865:189325-189573 +		--C-------CTT-CGACCGAAA-GAG-GAAAGG-AAAAATTATGCA-AAGCAAA-GAT-TGCGTAATCAGCG-TTAATGAGGCAGGCA-AAAG------------GGGTC-----------------------------------------------GTT------TCCCGCTGATTTGGCTAATTC-AATCC-AA-TTTTCGC-CGGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGC------G---------TTTAATTCCTACT--------------------------GAA----------------ACAACCTTTTCTTCTCTTT---------------------T--TTTC-TTTCAGCTCGCAACGACCCGCAAGACGATGCGGAGGTGATTAAAGTGCCAT-----CGCGC
droEle1	scf7180000491028:2707693-2707934 +		TAA-------CTC-AGAGTAAAA-GAG-AGTAT-AAAGAGTTATGCA--AGCGAA--AC-TGCGTAATCAGCG-TTAATGAGGCAGGAA-AATG------------GGGTA------------------------------------------------TT------TCCCGCTGATTTGGCTAATTC-AATCC-TA-CTTTCGC-CAGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGC------G---------TTTAATTTGAACT--------------------------GAA----------------ACAAGCTTTTC---TCT--------------------------TTCT-TTTTAGCTCGCAACGACCCGCAGGACGATGCGGAGGTGATTAAAGTGGCCT-----CGCGC
droRho1	scf7180000780043:261932-262178 -		----------CTT-CGACTAAAA-GAA-TGTAAG-AAGAATTATGCA-AAGCAAA-GAC-TGCGTAATCAGCG-TTAATGAGGCAGGAA-AAAG------------GAGTC-----------------------------------------------TTT------CCCTGCTGATTTGGCTAATTC-AATCC-AA-TTTTCG--CAGGCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGC------G---------TTTAATTTGCACT--------------------------GAA----------------ACAACCTTTTC---CTTT-TATT-----------------T--TTCT-CTTTAGCTCGCAACGACCCGCAGGACGATGCGGAGGTGATTAAGGTGCCCT-----CGCGC
droFic1	scf7180000454015:292533-292782 -		----------CTT-CGAGCAAAA-GGG-AGGATG-AAAAATTATGCA-AAGCGAA-GAT-TGTGTAATCAGCG-TTAATGAGGCAGGAA-AAAG------------GGGTC-----------------------------------------------CTT------TCCCGCTGATTTGGCTAATTC-AATCC-GA-TTTTCAC-CAGCCAATTTG-------------------------------------------CCC--CTTAATGATG-ACTAACAGT------G---------TTTAATTCCCTCT--------------------------TAA----------------ATAGCCATTTC---CTTT-TGCT-------TT--------T--TTAA-TTTTAGCTAGAAGCGACCCGCAGGACGATGCGGAGGTGATTAAAGTGCCCA-----CTCGG
droKik1	scf7180000301476:508813-509104 -		GAACATTCCCCTTATAATGGAAA---G-AAATGG--ATAATTATGCA-AAGCAAA-GCT-TGCTTAATCAGCGGCTAATGAGGCTCTGAAAAAG------------GGGTC--------GA-CGCAAGGAG------C-------------TC--TTCTTT------TTCCGCTGATTTGGCTAATTT-AATGC-AA-TTTTCGC-CAGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACAAACAGT------G---------CTTAATTTCAACT--------------------------GAA----------------AC--CTTTTTC---TTATT-TTTCCTCTCTTTTTTATTCTACCCCTT-TTCCAGCTGGCAACAATCCGCAGGACGATGCCGAGGTGATTAACGTGCCAT-----CGCGC
droAna3	scaffold_12916:12987693-12987955 +		A----------TC-TAACCAATG-GAAAAAATGG-TGAAATTATGCGAAAGCTAT-GAG-GGCGTAATCAGCG-TTAATGAGGCAGTGA-AATG------------GGGTC--------GA----AAGGATT-----------------------CGCTTT------TGCCGCTGATTTGGCCAAATT-AATGC-AA-TCTTCGCACAGCCAATTTG-------------------------------------------CTC--CTTAATGATG-ACTAACTGG------T-TTTAAATTTTTAATTCCCGCT--------------------------AAA----------------AT--CCTTTTC---CGT--------------------------TTTC-TTCCAGCTCGCAACAATCCCCAGGACGATGCCGAGGTGATTGACGTTCCCT-----CGCGC
droBip1	scf7180000396580:531041-531291 -		GC------------CAAGCAATA-GAAAAAATGG-TGAAATTATGCGCAAGCCGT-GAG-GGCGTAATCAGCG-TTAATGGGGCAGTGA-AAAG------------GGGTC--------AA----AAGGATT-----------------------CGCTTT------TGCCGGTGATTTGGCCAAATT-AATGA-AA-TCTTCGC-ACA-----------------------------------------------------C--CCTAATGATG-ACTAACTGG------T-TTTAAATTTTTAATTCACGCT--------------------------AAA----------------AT--CCTTTTC---CGC--------------------------TTTC-TTTCAGCTCGGAACAATCCTCAGGACGATGCCGAGGTGATTGACGTTCCTT-----CGCGC
dp5	4_group3:5680026-5680277 +		G-----------------------------------AAAATTATGCTTAAGCAAA-GAT-TGCGTAATAAGCG-CTAATGAGGCGCCCAGAAAG------------GGGTAGGGGGCACGAACGA----AAGGGCAGCGCATGAA----AGTCAGCGCTTT------TCCCGCTGATTTGGCTAATTT-AATGA-AAATTTTCG--CAGCCAATTTG-------------------------------------------TTT--CTTAATGATG-AATAATACC------G---------TTTAATTTCA-------------------------------------------------------TTTC---TCGAC---------------------C--CTTC-TTGCAGCGCGCAACAATCCGCAGGACGATGCCGAGGTGATTAAAGTGCCCT-----CTCGC
droPer2	scaffold_1:7170915-7171176 +		CCT-------AGT-CAA-----A------------GAAAATTATGCTTAAGCAAA-GAT-TGCGTAATAAGCG-CTAATGAGGCGCCCAGAAAG------------GGGTAGGGGGCACGAACGA----AAGGGCAGCGCATGAA----AGTCAGCGCTTT------TCCCGCTGATTTGGCTAATTT-AATGA-AAATTTTCG--CAGCCAATTTG-------------------------------------------TTT--CTTAATGATG-AATAATACC------G---------TTTAATTTCAAT-----------------------------------------------------TC-----TCGAC---------------------C--CTTC-TTGCAGCGCGCAACAATCCGCAGGACGATGCCGAGGTGATTAAAGTGCCCT-----CTCGC
droWil2	scf2_1100000004521:10150759-10151081 -	dwi_1346	------------------------------------AAAATTATGCA-AATCAAAAGATTTTTGTAATAAGCG-TTAATGAGGCCACAA-AATGTTTG--------AGG-AGGGAGGCGGATTCA----AAAAGCGAAGCATCAGCAATAGTC--AGTTTT------TCCCGCTGATTTGGCTAATTT-CATCA-------------GGCCAATTTTGCTGCTGGTCCTTTTTGACTTTTCGCCGCT-------------TCT--CATAATTATG-TGTAATATT------T---------TCTCATTTTAATTTTACACCGTATCAGCTTACCCCATTTTAA----------------ACCATTTT--C---GTTT-TGTTTCTT---TT--------T--TTCATTTGCAGCACGTAATAATCCGCAAGATGACGCCGAGGTAATTTCCCAGCCAC-----GTCAG
droVir3	scaffold_12963:17538213-17538418 -		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGATTTGGCTTAATTCGA-CG-CA-TTTTCAG-CGGCTAATTTATG---------------GCCAAACGGCGCGCGTTTTAACTGCGC-TTTTTTAATTATA-ATTACGCGTAATATTTATTTGTATTTTTAATATATATT--------------------------TAT----------------ATGTTTTTTTT---TTTTC---------------------A--TTCC-TTGCAGCCCGCAACAGTCCGCAGGACGATGCGGAGGTGATTGCCGTGCCACAGGCTC-GGC
droMoj3	scaffold_6500:22585862-22586165 -		A-------------------------------------AAATATGCA-AAATGAA-AA---GTCTAATAAACG-CTAATGAGGCCACTA-AATGATTAGCACAAGGGGCAAAGGGAAACAA----AGGGATTTGCAGCGCTTTGC----GGTTTC---TGCTTACGAATTTGCTGATTTGGCTTATTT-CATGGGCAGCTCT-GG-CCGCTAATTTATG---------------AGAGGGCGTGGCTCGTCTTGACTAT-GCT--TTTAATGAGC-AGTAAAA-T------G-----TA--TT----TTTTATT--------------------------TATTTTAATTTTAATTTAAA-----TTTTC---ATT--------------------------CTAC-TTGCAGCACGCAACAGTCCGCAAGACGATGCGGAGGTGATTCCTCTGCC--------ACAG
droGri2	scaffold_15252:14967905-14968059 -		AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTAATGCGGCTAATTT-ATGGC-AA-ATTAAGC--TTTAGCTGCG-------------------------------------------CCT--TTTAATTATG-AATACTATT------T---------ATATATTTTAATA--------------------------TAA----------------AT---TTTCTT---TCTGT---------------------T--TCTC-TTGCAGCGCGCAACAGTCCGCAGGATGATGCTGAGGTGATTGATGTGCCA--------CAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GAC-------CTT-CAAGCGAAA-GAG-AGATGGAAAAAATTATGCA-AAGCAAA-GAT-TGCGTAATCAGCG-TTAATGAGGCAGGCA-AAAG------------GGTTC-----------------------------------------------TTTT-----AACCGCTGATTTGGCTAATTC-AATCC-AA-TTTTCGA-CGGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGT------G---------CTTAATTTCTACT--------------------------GAA----------------ATAACTTTTTC---TGTCT---------------------T--TGCA-TTTCAGCGCGCAACGATCCACAGGACGATGCGGAGGTGATTAAAGTACCAT-----CACGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGACGATGCGGAGGTGATT....................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAACGATCCACAGGACGATGC..............................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGATCCACAGGACGATG...............................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGCAACGATCCACAGGAC...................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATCCACAGGACGATGCGGAGG.........................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGATCCACAGGACGATGC..............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGACGATGCGGAGGTGATTAAAG................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GAC-------CTT-CAAGCGAAA-GAG-AGATGGAAAAAATTATGCA-AAGCAAA-GAT-TGCGTAATCAGCG-TTAATGAGGCAGGCA-AAAG------------GGTTC-----------------------------------------------TTTT-----AACCGCTGATTTGGCTAATTC-AATCC-AA-TTTTCGA-CGGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGT------G---------CTTAATTTCTACT--------------------------GAA----------------ATAACTTTTTC---TGTCT---------------------T--TGCA-TTTCAGCGCGCAACGATCCACAGGACGATGCGGAGGTGATTAAAGTACCAT-----CACGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAGGACGATGCGGAGGT........................	20	1	2.00	2	0	0	0	2
............................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGCAACGATCCACAGGACGATGCGG............................	28	1	1.00	1	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAACGATCCACAGGAC...................................	19	1	1.00	1	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................CGCGCAACGATCCACAGGAC...................................	20	1	1.00	1	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGCGGAGGTGATT....................	18	1	1.00	1	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCCACAGGACGATGCGGAGGTG.......................	25	1	1.00	1	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCCACAGGACGATGCGGAGGT........................	25	1	1.00	1	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGCGCAACGATCCACAGGACGAT................................	26	1	1.00	1	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGACGATGCGGAGGTGA......................	20	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACAGGACGATGCGGAGGTGAT.....................	25	1	1.00	1	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATCCACAGGACGATGCGGAGGT........................	26	1	1.00	1	0	1	0	0

dm3

GAC-------CTT-CAAGCAAAG-GAT-AGATGGAAAAAATTATGCA-AAGCAAA-GAT-TGCGTAATCAGCG-TTAATGAGGCACGCA-AAAG------------GGTTC-----------------------------------------------TTTT-----AACCGCTGATTTGGCTAATTC-AATCC-AA-TTTTCGA-CGGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGT------G---------CTTAATTTCTACT--------------------------GAA----------------ATAACTTTTTC---TGTCT---------------------T--TGCA-TTTCAGCGCGCAACGATCCACAGGACGATGCGGAAGTGATTAAAGTACCAT-----CACGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGATGCGGAAGTGATTA...................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGACGATGCGGAAGT........................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGATGCGGAAGTGATTAA..................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGATGCGGAAGTGAT.....................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGATGCGGAAGTGATT....................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCACAGGACGATGCGGA...........................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATCCACAGGACGATGCGGA...........................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................CAAAG-GAT-AGATGGAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATGCGGAAGTGATTAAAG................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGCGGAAGTGATTAAG.................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCCACAGGACGATGCGGA...........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCGGAAGTGATTAAG.................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGACGATGCGGAAGG........................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GAC-------CTT-CAAGCGAAA-GAG-AGATGGGAAAAATGATGCA-AAGCAAA-GAT-TGCGTAATCAGCG-TTAATGGGGCAGGAA-AAAG------------GGTTC-----------------------------------------------TTTT-----TACCGCTGATTTGGCTAATTC-AATCC-AG-TTTTCGC-CAGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGT------G---------CTTAATTTCTACT--------------------------GAA----------------ATAACTTTTTC---TGTCT---------------------C--TTCA-TTTCAGCCCGCAACGACCCACAGGATGATACAGAGGTGGATAAAGT---------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGATGATACAGAGGTGGATAAA.................	25	1	2.00	2	0	0	0	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGATACAGAGGTGGAT....................	20	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGATACAGAGGTGGA.....................	19	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATACAGAGGTGGA.....................	18	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CCCACAGGATGATACAGAG..........................	19	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGATACAGAGGTGGATA...................	21	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACCCACAGGATGATACAGAG..........................	23	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGACCCACAGGATGATACAGAGGT........................	28	1	1.00	1	0	0	0	0	1	0	0

droYak3

GAC-------CTT-TAAGCAAAA-GGG-AGATGGAAAAAATTATGCA-AAGCAAA-GAT-TGCGTAATCAGCG-TTAATGAGGCAGGCA-GAAG------------GGTTC-----------------------------------------------TTTT-----AACCGCTGATTTGGCTAATTC-AATCC-AA-TTTTCAC-CAGCCAATTTG-------------------------------------------GCT--CCTAATGATG-ACTAACAGT------G---------CTTAATTTCTATA--------------------------GAA----------------ATAACTTTTTC---TGTCT---------------------T--TTCA-TTTCAGCTCGCAGCGACCCGCAGGACGATGCAGAGGAAATTAAAGTACCAT-----CACGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCCGCAGGACGATGCAGA...........................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGCAGGACGATGCAGAGG.........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGATGCAGAGGAAA......................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTCGCAGCGACCCGCAGGACGATG...............................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

C---------CAC-CGACCAAAACGGG-AGACGG-AAAAATTATGCA-AAGTAAA-GAT-GGCGTAATCAGCG-TTAATGAGGCAGGCAAAAAG------------GGGTC-----------------------------------------------GTT------TCCTGCTGATTTGACTAATTC-AATCC-AA-TTTTCAC-CAGGCAATTTG-------------------------------------------CCT--CTTAATGATGGACTAACAGT------A---------TTTAATTCCCACT--------------------------GAA----------------ATAACCTTCTC---CCTTTTTCT-------TA--------T--TACT-TTTCAGCTCGCAACGACCCGCAGGATGATGCGGAGGTGATTAAAGTGCCCT-----CAAGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

--C-------CTT-CGACGAAAG---G-AGAAGG-AAAAATTATGCA-AAGCAAA-GAC-TGCGTAATCAGCG-TTAATGAGGCAGGAA-AAAG------------GGGTC-----------------------------------------------GTT-------TCCGCTGATTTGGCTAATTC-AATCC-CA-TTTTCGC-CAGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGC------G---------TTTAATTTGTACT--------------------------GAA----------------ACAACCTTTTC---TTG--------------------------CTGC-TTTCAGCTCGCAACGACCCGCAGGACGATGCGGAGGTGATTAAAGTGCCAT-----CACGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

--C-------CTT-CGACCGAAA-GAG-GAAAGG-AAAAATTATGCA-AAGCAAA-GAT-TGCGTAATCAGCG-TTAATGAGGCAGGCA-AAAG------------GGGTC-----------------------------------------------GTT------TCCCGCTGATTTGGCTAATTC-AATCC-AA-TTTTCGC-CGGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGC------G---------TTTAATTCCTACT--------------------------GAA----------------ACAACCTTTTCTTCTCTTT---------------------T--TTTC-TTTCAGCTCGCAACGACCCGCAAGACGATGCGGAGGTGATTAAAGTGCCAT-----CGCGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TAA-------CTC-AGAGTAAAA-GAG-AGTAT-AAAGAGTTATGCA--AGCGAA--AC-TGCGTAATCAGCG-TTAATGAGGCAGGAA-AATG------------GGGTA------------------------------------------------TT------TCCCGCTGATTTGGCTAATTC-AATCC-TA-CTTTCGC-CAGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGC------G---------TTTAATTTGAACT--------------------------GAA----------------ACAAGCTTTTC---TCT--------------------------TTCT-TTTTAGCTCGCAACGACCCGCAGGACGATGCGGAGGTGATTAAAGTGGCCT-----CGCGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

----------CTT-CGACTAAAA-GAA-TGTAAG-AAGAATTATGCA-AAGCAAA-GAC-TGCGTAATCAGCG-TTAATGAGGCAGGAA-AAAG------------GAGTC-----------------------------------------------TTT------CCCTGCTGATTTGGCTAATTC-AATCC-AA-TTTTCG--CAGGCAATTTG-------------------------------------------GCT--CTTAATGATG-ACTAACAGC------G---------TTTAATTTGCACT--------------------------GAA----------------ACAACCTTTTC---CTTT-TATT-----------------T--TTCT-CTTTAGCTCGCAACGACCCGCAGGACGATGCGGAGGTGATTAAGGTGCCCT-----CGCGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

----------CTT-CGAGCAAAA-GGG-AGGATG-AAAAATTATGCA-AAGCGAA-GAT-TGTGTAATCAGCG-TTAATGAGGCAGGAA-AAAG------------GGGTC-----------------------------------------------CTT------TCCCGCTGATTTGGCTAATTC-AATCC-GA-TTTTCAC-CAGCCAATTTG-------------------------------------------CCC--CTTAATGATG-ACTAACAGT------G---------TTTAATTCCCTCT--------------------------TAA----------------ATAGCCATTTC---CTTT-TGCT-------TT--------T--TTAA-TTTTAGCTAGAAGCGACCCGCAGGACGATGCGGAGGTGATTAAAGTGCCCA-----CTCGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GAACATTCCCCTTATAATGGAAA---G-AAATGG--ATAATTATGCA-AAGCAAA-GCT-TGCTTAATCAGCGGCTAATGAGGCTCTGAAAAAG------------GGGTC--------GA-CGCAAGGAG------C-------------TC--TTCTTT------TTCCGCTGATTTGGCTAATTT-AATGC-AA-TTTTCGC-CAGCCAATTTG-------------------------------------------GCT--CTTAATGATG-ACAAACAGT------G---------CTTAATTTCAACT--------------------------GAA----------------AC--CTTTTTC---TTATT-TTTCCTCTCTTTTTTATTCTACCCCTT-TTCCAGCTGGCAACAATCCGCAGGACGATGCCGAGGTGATTAACGTGCCAT-----CGCGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

A----------TC-TAACCAATG-GAAAAAATGG-TGAAATTATGCGAAAGCTAT-GAG-GGCGTAATCAGCG-TTAATGAGGCAGTGA-AATG------------GGGTC--------GA----AAGGATT-----------------------CGCTTT------TGCCGCTGATTTGGCCAAATT-AATGC-AA-TCTTCGCACAGCCAATTTG-------------------------------------------CTC--CTTAATGATG-ACTAACTGG------T-TTTAAATTTTTAATTCCCGCT--------------------------AAA----------------AT--CCTTTTC---CGT--------------------------TTTC-TTCCAGCTCGCAACAATCCCCAGGACGATGCCGAGGTGATTGACGTTCCCT-----CGCGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATCCCCAGGACGATGCCG............................	22	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATTGACGTTCCCT-----CGCG.	21	1	2.00	2	0	0	0	0	0	2
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCGAGGTGATTGACGTT..............	22	1	2.00	2	0	0	0	0	0	2
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATTGACGTTCCCT-----CGCGC	22	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCCCAGGACGATGCCGAGGT........................	23	1	1.00	1	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCCCAGGACGATGCCGAGGTGA......................	25	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAATCCCCAGGACGATGCCG............................	24	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATGCCGAGGTGATTGACGTT..............	23	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCCCCAGGACGATGCC.............................	19	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGACGATGCCGAGGTGATTG...................	23	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATCCCCAGGACGATGC..............................	20	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCCCAGGACGATGCCGAGGTG.......................	24	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGATGCCGAGGTGATTGA..................	22	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATCCCCAGGACGATGC..............................	19	1	1.00	1	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATCCCCAGGACGATGCC.............................	20	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGCCGAGGTGATTGACGT...............	23	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGATGCCGAGGTGATTGACGT...............	25	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCCGAGGTGATTGACGTTCCC...........	25	1	1.00	1	0	0	0	0	0	1

droBip1

GC------------CAAGCAATA-GAAAAAATGG-TGAAATTATGCGCAAGCCGT-GAG-GGCGTAATCAGCG-TTAATGGGGCAGTGA-AAAG------------GGGTC--------AA----AAGGATT-----------------------CGCTTT------TGCCGGTGATTTGGCCAAATT-AATGA-AA-TCTTCGC-ACA-----------------------------------------------------C--CCTAATGATG-ACTAACTGG------T-TTTAAATTTTTAATTCACGCT--------------------------AAA----------------AT--CCTTTTC---CGC--------------------------TTTC-TTTCAGCTCGGAACAATCCTCAGGACGATGCCGAGGTGATTGACGTTCCTT-----CGCGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

G-----------------------------------AAAATTATGCTTAAGCAAA-GAT-TGCGTAATAAGCG-CTAATGAGGCGCCCAGAAAG------------GGGTAGGGGGCACGAACGA----AAGGGCAGCGCATGAA----AGTCAGCGCTTT------TCCCGCTGATTTGGCTAATTT-AATGA-AAATTTTCG--CAGCCAATTTG-------------------------------------------TTT--CTTAATGATG-AATAATACC------G---------TTTAATTTCA-------------------------------------------------------TTTC---TCGAC---------------------C--CTTC-TTGCAGCGCGCAACAATCCGCAGGACGATGCCGAGGTGATTAAAGTGCCCT-----CTCGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAATCCGCAGGACGATGCCGA...........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCGAGGTGATTAAAGTG..............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGGACGATGCCGAGGTGATTA...................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCAGGACGATGCCGAG..........................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCAGGACGATGCCGAGGTGATT....................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGGACGATGCCGAGGTG.......................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CCT-------AGT-CAA-----A------------GAAAATTATGCTTAAGCAAA-GAT-TGCGTAATAAGCG-CTAATGAGGCGCCCAGAAAG------------GGGTAGGGGGCACGAACGA----AAGGGCAGCGCATGAA----AGTCAGCGCTTT------TCCCGCTGATTTGGCTAATTT-AATGA-AAATTTTCG--CAGCCAATTTG-------------------------------------------TTT--CTTAATGATG-AATAATACC------G---------TTTAATTTCAAT-----------------------------------------------------TC-----TCGAC---------------------C--CTTC-TTGCAGCGCGCAACAATCCGCAGGACGATGCCGAGGTGATTAAAGTGCCCT-----CTCGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTAAAGTGCCCT-----CTCG.	20	1	1.00	1	0	0	0	0	0	1

droWil2

------------------------------------AAAATTATGCA-AATCAAAAGATTTTTGTAATAAGCG-TTAATGAGGCCACAA-AATGTTTG--------AGG-AGGGAGGCGGATTCA----AAAAGCGAAGCATCAGCAATAGTC--AGTTTT------TCCCGCTGATTTGGCTAATTT-CATCA-------------GGCCAATTTTGCTGCTGGTCCTTTTTGACTTTTCGCCGCT-------------TCT--CATAATTATG-TGTAATATT------T---------TCTCATTTTAATTTTACACCGTATCAGCTTACCCCATTTTAA----------------ACCATTTT--C---GTTT-TGTTTCTT---TT--------T--TTCATTTGCAGCACGTAATAATCCGCAAGATGACGCCGAGGTAATTTCCCAGCCAC-----GTCAG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGATGACGCCGAGGTAATTTCCC................	27	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGATGACGCCGAGGTAAT.....................	21	1	1.00	1	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAAGATGACGCCGAGGTA.......................	23	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGATGACGCCGAGGTAATTTC..................	23	1	1.00	1	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAGATGACGCCGAGGTA.......................	20	1	1.00	1	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGCAAGATGACGCCG............................	18	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAAGATGACGCCGAGGTA.......................	21	1	1.00	1	0	0	1	0	0

droVir3

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGATTTGGCTTAATTCGA-CG-CA-TTTTCAG-CGGCTAATTTATG---------------GCCAAACGGCGCGCGTTTTAACTGCGC-TTTTTTAATTATA-ATTACGCGTAATATTTATTTGTATTTTTAATATATATT--------------------------TAT----------------ATGTTTTTTTT---TTTTC---------------------A--TTCC-TTGCAGCCCGCAACAGTCCGCAGGACGATGCGGAGGTGATTGCCGTGCCACAGGCTC-GGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCGGAGGTGATTGCC.................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGACGATGCGGAGGTGATTGCCGTG..............	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACGATGCGGAGGTGATT....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACGATGCGGAGGTGATTGC..................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGGACGATGCGGAGGTGATTGC..................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTCCGCAGGACGATGCG.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGATTGCCGTGCCACAGG.......	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCGGAGGTGATTGCCGT...............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCCGTGCCACAGGCTC-T..	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGCAACAGTCCGCAGGACGATGCG.............................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCAGGACGATGCGGAGGTGATTGCC.................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGCGGAGGTGATTGC..................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

A-------------------------------------AAATATGCA-AAATGAA-AA---GTCTAATAAACG-CTAATGAGGCCACTA-AATGATTAGCACAAGGGGCAAAGGGAAACAA----AGGGATTTGCAGCGCTTTGC----GGTTTC---TGCTTACGAATTTGCTGATTTGGCTTATTT-CATGGGCAGCTCT-GG-CCGCTAATTTATG---------------AGAGGGCGTGGCTCGTCTTGACTAT-GCT--TTTAATGAGC-AGTAAAA-T------G-----TA--TT----TTTTATT--------------------------TATTTTAATTTTAATTTAAA-----TTTTC---ATT--------------------------CTAC-TTGCAGCACGCAACAGTCCGCAAGACGATGCGGAGGTGATTCCTCTGCC--------ACAG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTCCGCAAGACGATGCGGA...........................	23	1	1.00	1	1	0	0	0	0	0

droGri2

AG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTAATGCGGCTAATTT-ATGGC-AA-ATTAAGC--TTTAGCTGCG-------------------------------------------CCT--TTTAATTATG-AATACTATT------T---------ATATATTTTAATA--------------------------TAA----------------AT---TTTCTT---TCTGT---------------------T--TCTC-TTGCAGCGCGCAACAGTCCGCAGGATGATGCTGAGGTGATTGATGTGCCA--------CAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATGATGCTGAGGTGATTG...................	23	1	3.00	3	1	2
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGATGCTGAGGTGATT....................	19	1	2.00	2	1	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGGATGATGCTGAGGTGATTG...................	24	1	2.00	2	0	2
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGATGATGCTGAGGTG.......................	19	1	2.00	2	2	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTCCGCAGGATGATGCTGAG..........................	23	1	2.00	2	0	2
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCAGGATGATGCTGAGGTGAT.....................	25	1	1.00	1	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCAGGATGATGCTGAGGT........................	22	1	1.00	1	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGCTGAGGTGATTG...................	19	1	1.00	1	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTGATTGATGTGCCA--------C..	19	1	1.00	1	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTCCGCAGGATGATGCTGA...........................	22	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCAGGATGATGCTGAG..........................	20	1	1.00	1	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCAGGATGATGCTGAGGTGATTG...................	26	1	1.00	1	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATGATGCTGAGGTGAT.....................	20	1	1.00	1	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGGATGATGCTGAGGTGATTGATG................	27	1	1.00	1	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGGTGATTGATGTGCCA--------...	20	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGCAGGATGATGCTGAGGTGATTG...................	27	1	1.00	1	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTCCGCAGGATGATGCTGAGGTG.......................	25	1	1.00	1	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTCCGCAGGATGATGCT.............................	20	1	1.00	1	0	1

dsi_22702

2l:12066248-12066397 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads