ID:

dsi_22687

 Coordinate:

2l:19564563-19564712 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.2 -26.1 -25.9

Flybase annnotation

CDS [2l_19564270_19564588_+]; three_prime_UTR [2l_19564589_19565639_+]; exon [2l_19564270_19565639_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
GAAGAACGAGTTCGAGTTCGGGATACCCTTCATTTCGATCCGGAACCCAGGTAAGGCTCTGCGCAACACCATCTAAGGACGATTCCGCCGGAGTGGAGAGGTGGCAGAGAAGTGACCAAAGACCAAGCGATAATATCGTACATGCTTTAAAACCATACACACTTATTGTAAAATTGCGGCCACGCAATTGTAGCGCACACTTTTTATATAGTTGAAACAGTTTATTAGCCATAGATGTATTTATATTAAG
***************************************************...(((....(((((..(((.((..((.((....))))..)))))...(((.((......)).)))((((.....(((((...))))).....)))).......((((.......))))...))))))))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
..........................................................................................................................................................ATACACACTTATTGTAAAATTGCGGCC..................................................................... 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................TCCGGAACCCAGGTAAGGCTC............................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........TCGAGTTCGGGATACCCTT............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...................................................TAAGGCTCTGCGCAACACC.................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTATTGTAAAATTGCGGCCAC................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................GGAGAGGTGGCAGAG............................................................................................................................................. 15 0 2 1.00 2 0 0 1 0 1 0 0 0 0 0 0
...............GTTCGGGATAGCCATCA.......................................................................................................................................................................................................................... 17 2 6 1.00 6 0 0 6 0 0 0 0 0 0 0 0
.............................................................CGCAACACCATCTAAGGACGA........................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................ATAATATCGTACATGCTTT...................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................ATACCCTTCATTTCGATCCGGA.............................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............GTTCGGGATAGCCTTC........................................................................................................................................................................................................................... 16 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................AGGGACGATTCCGCCGGAGTG........................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................GATAATATCGTACATGCG........................................................................................................ 18 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...................GGGATACCCTTCATTTCGATCCGGA.............................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................CATTTCGATCCGGAACCCA......................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................TTCATTTCGATCCGGAACCC.......................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................AGGTAAGGCTCTGCGCAACACC.................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................GGAGAGGTGGCAGAGTGGTC........................................................................................................................................ 20 3 10 0.40 4 0 0 1 0 3 0 0 0 0 0 0
.....................................................................................................................................................................TTGTAAAATGGCGGCCA.................................................................... 17 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................GGAGAGGTGGCAGAGCGGT......................................................................................................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................GGATTGGACAGGTGGCAGAG............................................................................................................................................. 20 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................GGAGAGGTGGCCGAG............................................................................................................................................. 15 1 11 0.27 3 0 0 1 0 0 0 2 0 0 0 0
................................................................................GATTCCGCCGGAGTGT.......................................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................GGAGAGGTGGCAGAGTGGT......................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................GACGATTCCGCCTGA.............................................................................................................................................................. 15 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................GGAGAGGTGGCAGAGTGG.......................................................................................................................................... 18 2 20 0.25 5 0 0 3 0 1 0 0 0 0 0 1
................TTCGGGATAGCCTTCAG......................................................................................................................................................................................................................... 17 2 10 0.20 2 0 0 2 0 0 0 0 0 0 0 0
..............................................................................................GGAGAGGTGGCCGAGTGGTGA....................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0
.........................................GGAACCCAGGTACGGACC............................................................................................................................................................................................... 18 3 20 0.20 4 4 0 0 0 0 0 0 0 0 0 0
..............................................................................................GGAGAGTTGGCAGAGTGGT......................................................................................................................................... 19 3 20 0.20 4 0 0 0 0 0 3 0 0 0 1 0
...........................................AACCCAGGTAAGGTT................................................................................................................................................................................................ 15 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................GGAGACGTGGCAGAG............................................................................................................................................. 15 1 12 0.17 2 0 0 0 0 0 0 2 0 0 0 0
..................................................................................................................ACCAGCGACCAAGCGATA...................................................................................................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0
...............GTTCGGGATAGCCTTCAGA........................................................................................................................................................................................................................ 19 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................GTGACCCGAGACCAAGC.......................................................................................................................... 17 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0
...............GTTCGGGATAGCCATCAG......................................................................................................................................................................................................................... 18 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TTGTAAGATGGCGGCCA.................................................................... 17 2 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................GGAGAGATGGCAGAG............................................................................................................................................. 15 1 18 0.06 1 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTTCTTGCTCAAGCTCAAGCCCTATGGGAAGTAAAGCTAGGCCTTGGGTCCATTCCGAGACGCGTTGTGGTAGATTCCTGCTAAGGCGGCCTCACCTCTCCACCGTCTCTTCACTGGTTTCTGGTTCGCTATTATAGCATGTACGAAATTTTGGTATGTGTGAATAACATTTTAACGCCGGTGCGTTAACATCGCGTGTGAAAAATATATCAACTTTGTCAAATAATCGGTATCTACATAAATATAATTC
*********************************************************************...(((....(((((..(((.((..((.((....))))..)))))...(((.((......)).)))((((.....(((((...))))).....)))).......((((.......))))...))))))))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 M053
female body
 SRR902009
testis
..............................................................................................................TCACTGGTTTCTGGTTCGCTA....................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...CTTGCTCAAGCTCAAGCCCTA.................................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.TTCTTGCTCAAGCTCAAGCCC.................................................................................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0
........................................................................................................................CTGGTTCGCTATTATAGCATG............................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.............................................GGGTCCATTCCAAGAAGC........................................................................................................................................................................................... 18 2 4 1.25 5 0 1 2 0 0 2 0 0 0 0
.............................................TGGTCCATTCCAAGAAGCG.......................................................................................................................................................................................... 19 3 7 1.14 8 0 2 1 0 2 0 3 0 0 0
...................................................................................................CCACCGTCTCTTCACTGGTTT.................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................CACTGGTTTCTGGTTCGCTA....................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................CAGTAAAGCTGGGCCTTG............................................................................................................................................................................................................ 18 2 3 1.00 3 0 0 0 3 0 0 0 0 0 0
...............................................GTCCATTCCGAGACGCGTTGT...................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................TGGGTCCATTCCAAGAAG............................................................................................................................................................................................ 18 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................CTGGTTTCTGGTTCGCTATTA.................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..TCTTGCTCAAGCTCAAGCCCTA.................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................GGTCCATTCCAAGAAGC........................................................................................................................................................................................... 17 2 7 1.00 7 0 1 3 0 1 2 0 0 0 0
...................................................................TGGTAGATTCCTGCTAAGGCG.................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....TGCTCAAGCTCAAGCCCTATG................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................CAGTAAAGCTGGGCCTTGG........................................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................GCACTGGTTTCTGGTTCGCTA....................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................ACGAAATGTTGGTAT............................................................................................. 15 1 13 0.69 9 0 0 0 0 3 6 0 0 0 0
.............................................GGGTCCATTCCAAGAAGCG.......................................................................................................................................................................................... 19 2 3 0.67 2 0 0 0 0 1 1 0 0 0 0
..............................................GGTCCATTCCAAGAAG............................................................................................................................................................................................ 16 2 20 0.65 13 0 4 8 0 0 1 0 0 0 0
.................................................................................................................CTGGTTTCTGGTTCGCTGTTG.................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................GGTCCATTCCAAGATGCG.......................................................................................................................................................................................... 18 2 4 0.50 2 0 1 0 0 1 0 0 0 0 0
.............................................CGGTCCATTCCAAGAAGCG.......................................................................................................................................................................................... 19 3 12 0.42 5 0 1 2 0 1 0 0 1 0 0
.............................................GGGTCCATTCCAAGAAG............................................................................................................................................................................................ 17 2 10 0.40 4 0 3 1 0 0 0 0 0 0 0
.............................................TGGTCCATTCCAAGAAGCGT......................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0
...........................................TTGGGTCCATGCCGA................................................................................................................................................................................................ 15 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0
............................................TGGGTCCATTCCAAGATG............................................................................................................................................................................................ 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0
..............................................GGTCCATTCCAAGAAGCG.......................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 1 0 0 0
............................................TGGGTCCATTCCAAGAA............................................................................................................................................................................................. 17 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0
..............................................GGTCCATTCCAAGATGC........................................................................................................................................................................................... 17 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0
............................................ATGGTCCATTCCGAGAAGC........................................................................................................................................................................................... 19 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................TATGTCAACTTTGTCAAG........................... 18 2 9 0.11 1 0 0 0 0 1 0 0 0 0 0
...............................................GTCCATTCCAAGATGC........................................................................................................................................................................................... 16 2 19 0.11 2 0 0 2 0 0 0 0 0 0 0
..................................................................................................................................................AATTTCGGTGTGTGTGAAT..................................................................................... 19 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................TATGTCAACTTTGTCAAGG.......................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................TATAGCATGAACCAAGTT.................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:19564513-19564762 + dsi_22687 GAAGAACGAGTTCGAGTTCGGGATACCCTTCATTTCGATCCGGAACCCAGGTAAGGCTCTGCGCAACACCATCTAAG--GACGATTC-CGCCGG-----AGTGGAGA------------G-------------------------GTGGCAG-----------AGAAGTG-----ACCAAAGACCAA--GCG--ATAATATCGTACA--TGCTTTAAAA----------------------------------------------CCATACACACTTATT--GTA-----AAATTGCGGC-----CACGCAATTGTAGCGCACAC--TTT-TT-----ATA-------TAGTTGAA-ACAGTT--TATTAGCCATA--GATG--TATTTATA----T---TAAG
droSec2 scaffold_7:3683590-3683832 + GAAGAACGAGTTCGAGTTCGGGATACCCTTCATTTCGATCCGGAACCCAGGTAAGGCTCTGCGCAACACCATCTGAG--GACGATTC-CGCCTG-----AGTGGAGA------------G-------------------------GTGGCAG-----------AGAAGTG-----ACCAAAGACCAA--GCG--ATAATATCGTACA--TGCTTTAACA----------------------------------------------CCATACACACTTATT--GTA-----AAATTGCGGC-----AACGCAATTGTAGCGCACAC--TTT-TT-----ATA-------TAGTTGAA-ACAGTT--TATTAGCCATA--GATG--TATTTA--------------
dm3 chr2L:20072597-20072846 + AAAGAACGAGTTCGAGTTCGGGATACCCTTCATTTCGATCCGGAATCCAGGTAAGGCTCTGCGCAACACCATCTAAG--GACGATTG-CGCCGG-----AATGGAGA------------G-------------------------CTGGCAG-----------AGAAGTG-----ACCAAAGACCAA--GCG--ATAATATCGTACA--TGCTTTAAAA----------------------------------------------CCATACACAATTATT--GTA-----AAATTGCGGC-----AACGTAATTGTAGCGCACAC--TTT-TT-----ATA-------TAGTTGAA-ACAGTT--TATTAGCCATA--GATG--TATTTATA----T---TAAG
droEre2 scaffold_4845:4257783-4258027 - GAAGAACGAGTTTGAGTTCGGGATACCCTTCATTTCGATACGGAATCCAGGTAAGGCTCTGCGAAACACCATCTAAA--GACGATT----CTGG-----AGTGCAGA------------G-------------------------GTGGCAG-----------AGAAATG-----ACCAAAGACCAA--GCG--ATAATATCGTACA--TGCTTTAAAA----------------------------------------------ACATAAACAATTATT--GTA-----AAATTACGGC-----AACGTAATTGTAGCGCACAC--TTT-TT-----ATA-------TAGTTGAA-ACAGTT--TATTAGCCATA--GATA--TATTTAT---------TAAG
droYak3 2R:6536817-6537061 + GAAGAACGAGTTTGAGTTCGGGATACCCTTCATTTCGATACGGAATCCAGGTAAGGCTCTGCGAAACACCATCTAAG--GACGATT----CTGG-----AGTGGAGA------------G-------------------------GTGGCAG-----------AGAAATG-----ACCAAAGACCAA--GCG--ATAATATCGTACA--TGCTTTAAAA----------------------------------------------CCATAAACAATTATT--GTA-----AAATTACGGC-----AACGTAATTGTAGCGCACAC--TTT-TT-----ATA-------TAGTTGAA-ACCGTT--TATTAGCCATA--GATA--TATTTAT---------TAAG
droEug1 scf7180000409752:1066144-1066423 + GAAAAACGAATTCGAATTCGGGATACCCTTCATATCGATCAGGAATCCAGGTAAGGCCCTGAGAAACACCATCTAAA--GACGATCCTGGCTGG-----AGTGGAGA------------GAAAGA-TAATG---AGAGAAAGCAGAGGGCAG-----------AGAAATGAA---ACCAAAGACCAA-AGCG--ATGATATCGTAAA--TGCTTTACAA---------------------------------------------CCCATA-ACAATTATT--GTA-----AAATTACAGA-----TATGTAATTGTAGCGCACAC--TTT-TT-----ATA-------TAGTTGAAAACATTT--TATTAGCCATAGACATA--TATTTATATA--T---ATAG
droBia1 scf7180000302408:982543-982791 + GAAGAACGAGTTCGAGTTCGGGATACCCTTCATCTCGATCAGGAACCCAGGTAAGGCCCTGCGTAACACCATCTAAG--GACGATT----CCGG-----AGTGGAGA------------GAG-----------------------AGAGCAG-----------AGAAATG-----ACCAAAAACCAA-TGCG--ATAGCATCGTAAA--TGCTTTGCAA----------------------------------------------CCTTAAGCAATTATT--GTA-----AAATTACAGA-----AATGTAATTGTGGCGCACAC--ATT-TT-----ATG-------TAGTTACGAACATTT--TATTAGCCATA--GATA--TATTTATA---------GAG
droTak1 scf7180000415115:417253-417492 - AAAGAACGAGTTCGAATTCGGGATACCCTTCATATCGATCAGGAATCCAGGTAAGGCCCTGCGAAACACCATCTAAG--GACGATT----CTGG-----AGTGGAGA------------GAGAGAA-------------AAGCAGAGGGCAG-----------AGAAATG-----ACCAAAGACCAA--GCG--ATAATA--------------------------------------------------------------------CAAACAATTATT--GTA-----AAATTACAGC-----AATGTAATTGTGGCGCACACACTTT-TT-----ATA-------TAGTTAAAGACATTT--TATTAGCCATA--GATA--TATTTATA---------TAG
droEle1 scf7180000491046:2893201-2893452 - GAAGAACGAGTTCGAGTTCGGGATACCCTTCATATCGATCAGGAATCCAGGTAAGGCCCTGCGCAACACCATCTAAA--GGCGATA----CCGG-----AGTGGAGA------------GAGTGAGC--TGAGAGCTGAGTGCTGAGGGCAG-----------AGAAATG-----ACCAAAGACCAAAAGCG--ATAATATCGTAAATTTGCTTTAAAA----------------------------------------------CCATAACCAAATATT--GTA-----AAATTGCAGA-----CA------TGTGACGCACAA--CTT-TTTT---A--------------------------TATTAGCCATA--GATA--TATTTATA---------TAG
droRho1 scf7180000780010:26065-26323 - GAAGAACGAGTTCGAATTCGGGATACCCTTCATATCGATCAGGAATCCAGGTAAGGCTCTGCGCAACACCATCTAGA--GACGATA----CTGG-----AGTGGATTGGAGTGGATA--GAG------------------AGCTGACAGCAG-----------AGAAATA-----ACTAATGACCAA-AGCG--ATAATATCGTAAACTTACTTTAAAA----------------------------------------------CCATAACCAAATATT--GTC-----AAATTACAGA-----CAC------GTCGCGCACAC--TTT-TG-----ATA-------TAGTTAAA-ACATTT--TATTAGCCATA--GATA--TATTTATA---------TAG
droFic1 scf7180000454082:572450-572716 + GAAGAACGAGTTCGAGTTCGGGATACCCTTCATATCGATAAGGAACCCAGGTAAGGCCCTGCGCAACACCATCTAGT--GGATCTAA-CACTGAAGCGGAGCGGAGA------------GA------------------------AGAGAAG-----------AGAGACG-----ACCAAAGACCAA-AGCG--ATAATATCGTAAA--TGCTTTAAAG----------------------------------------------CCATAACCAAATATT--GTA-----AAACTACA-CATGGATGTGTAATTGCGGCGCACAC--TTT-TT-----ATA-------TAGTTGAAAACGTTT--TATTAGCCATA--GATA--TATTTATATA--TTGTATAG
droKik1 scf7180000302382:918406-918655 + CAAGAATGACTTTGAGTTCGGCATACCGTTCATATCGATAAGAAACCCAGGTAAGGCGCTGCGCAACACAATCTAAG--GGCGCTGC-TACTGG-----AGCGGATA------TATAGAGAGAGAG-------------GAGCAGAGCGCA---------TA-------A-----ACTAAAGACCAA-AGCG--ATAATATCGTAAA--TGCTTTAAAA----------------------------------------------CTAAAACCAA---------------AAATAACCAA-----CCATTAATTGTAGCGCACAACATTT-TT-----ATG-------TAGTTTGA-ATGTTTTGTATTAGCAAAT--A----------ATG---------TAG
droAna3 scaffold_12916:8738708-8738968 - GAAAAACGAGTTTGAGTTCGGGATACCCTTCATATCGATCCGGAATCCAGGTAAGGCCCTGCGCAACACCATCTGAGATGGCGATG----CTGG-----AATGGAGA------------GAGTGG-CAGTG---GCAG-GTGGAGAGACCAG-----------AGAAATG-----ACCA-TGACCAA--GAG---TA-------AAA--TGCGTATA--------------------------------------------------ATGTAGAGTTATT--GAA-----G------AGA-----ATTGTAATTTTAGCGCACAC--TTT-TG-----ATAAATCCAGTAGTTGAG-ACGTTT--TATTAGCCATATAGAAG--TATTTATACA--C---TTAG
droBip1 scf7180000396535:1279343-1279580 - GAAAAACGAGTTTGAGTTCGGAATACCCTTCATATCGATTCGAAATCCAGGTAAGGCCCTGCGCAACACCATCTAAG--GTG--CTC-GGCTGG-----AGAGGAGA------------GTGG-----------------AGT---AACAAG-----------AGAAACC--ATGACCA-TGACCAA--AAG---TA-------AAA--TGCG------------------------------------------------------------------T--ATA-----ATGTTAGAGA-----ATCGTAATTTTAGCGCACAC--TTT-TG-----ATATATTTAGTAGTTGAG-ACATTT--TATTAGCCATATAGATA--TATTTATACA--C---TTAG
dp5 4_group4:3588970-3589189 - AAAGAACGAGTTTGAGTTCGGGATACCATTCATATCCATTAGGAATCCAGGTAAGACTCTACGCAGCACCATCTGAG--GAGAGC-------------------------------------------------------AGC---------AACAACAACAAACAAATG-----ACCAAAAAACTA--GAGTGG---------AAATGTGCTTTAAAG---------------------------------------------ATCGTAA-----TGTG--GT-TAAAA-CAATAGAAA-----TAAGTAATGGTAGCGCACAG--TTT-TTT--AGATA-------TAGTAG-----------------CAT-A------CG-----GTAT-AC-GGTTGAG
droPer2 scaffold_10:2618019-2618240 - AAAGAACGAGTTTGAGTTCGGCATACCATTCATATCAATTAGGAATCCAGGTAAGACTCTACGCAGCACCATCTGAG--GAGAGC-------------------------------------------------------AGC---------AACAACAACAAACAAATG-----ACCAAAAAACTA--GAGTGG---------AAATGTGCTTTAAAG---------------------------------------------ATCGTAA-----TGTG--GT-TAAAA-CAATAGAAA-----TAAGTATTGGTAGCGCACAG--TTT-TTTTTAGATA-------TAGTAG-----------------CAT-A------CG-----GTAT-AC-GGTTGAG
droWil2 scf2_1100000004884:690459-690705 + GAAAAACGAATTTGAATTCGGCATACCGTTTATATCGATTAGAAATCCAGGTAAGACCCTGCGCAATACGATCTGAG----CGATCT-AGCAGA-----AGTCAACT------------C-------------------------AAAGTAGAACAATATTAAATCAATG-----ACA------CTA--ACG--TA---AACGCAAA--TGCTTTAATA---------------------------------------------ATCGTAAAAACATATT--GTA-----TATTAA--------------TATTGTAGCACACAT--TTATTT-----ATA------ACAGTTAAC-TAAATT--TTTTAACAA-ATAGTTGTCCAATAATA----T---TAAG
droVir3 scaffold_12723:4603981-4604057 + AAAGAATGAGTTTGAGTTCGGCATACCGTTCATATCGATTAGAAATCCAGGTAAGACACTGCGCACCACCATCTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:10570488-10570570 + AAAGAATGAATTCGAATTCGGTATACCCTTCATATCGATCCGAAATCCAGGTAAGACACTGCGTAACACGATCTAAG--ATCTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15126:3558941-3559185 + AAAGAATGAGTTTGAGTTCGGCATACCGTTCATATCTATAGGAAATCCAGGTAAGGCACTGCGGAACACTATTTAAG--CTCAAC---------------------------------------------------------------------------------AATG-----ACTA-----CAA--CCG--ATAACAA-----T--TGCCTTCATAGACCAAAAATATATATTTAACTAAACCAAAAAATAAGACGTAAAA-CGC--TTTAATTAGTTGGTA-----AAATTGTAAT-----TTAGTTTTTAGTACGCAATCAATTT-TT-----AAC-------TAGTTGTC-AAAT-------------------TA--TATTTATT----A---TTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GAAGAACGAGTTCGAGTTCGGGATACCCTTCATTTCGATCCGGAACCCAGGTAAGGCTCTGCGCAACACCATCTAAG--GACGATTC-CGCCGG-----AGTGGAGA------------G-------------------------GTGGCAG-----------AGAAGTG-----ACCAAAGACCAA--GCG--ATAATATCGTACA--TGCTTTAAAA----------------------------------------------CCATACACACTTATT--GTA-----AAATTGCGGC-----CACGCAATTGTAGCGCACAC--TTT-TT-----ATA-------TAGTTGAA-ACAGTT--TATTAGCCATA--GATG--TATTTATA----T---TAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................ATACACACTTATT--GTA-----AAATTGCGGC-----C..................................................................................................2712.00200200000000000000
......................................TCCGGAACCCAGGTAAGGCTC.........................................................................................................................................................................................................................................................................................................................................................2112.00220000000000000000
...........TCGAGTTCGGGATACCCTT......................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000100000
...................................................TAAGGCTCTGCGCAACACC..............................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
...................................................................................................................................................................................................................................................................................TTATT--GTA-----AAATTGCGGC-----CAC................................................................................................2111.00110000000000000000
......................................................................................................GGAGA------------G-------------------------GTGGCAG-----------AG...............................................................................................................................................................................................................................................1521.00200000000011000000
.............................................................CGCAACACCATCTAAG--GACGA................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
..................................................................................................................................................................................................ATAATATCGTACA--TGCTTT.............................................................................................................................................................................................1911.00100100000000000000
......................ATACCCTTCATTTCGATCCGGA........................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
...............................................................................................................................................................................................G--ATAATATCGTACA--TGCG...............................................................................................................................................................................................1811.00101000000000000000
...................GGGATACCCTTCATTTCGATCCGGA........................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..............................CATTTCGATCCGGAACCCA...................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
............................TTCATTTCGATCCGGAACCC....................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
................................................AGGTAAGGCTCTGCGCAACACC..............................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
..................................................................................GATTC-CGCCGG-----AGTGT............................................................................................................................................................................................................................................................................................................1640.25100000000100000000
droSec2
GAAGAACGAGTTCGAGTTCGGGATACCCTTCATTTCGATCCGGAACCCAGGTAAGGCTCTGCGCAACACCATCTGAG--GACGATTC-CGCCTG-----AGTGGAGA------------G-------------------------GTGGCAG-----------AGAAGTG-----ACCAAAGACCAA--GCG--ATAATATCGTACA--TGCTTTAACA----------------------------------------------CCATACACACTTATT--GTA-----AAATTGCGGC-----AACGCAATTGTAGCGCACAC--TTT-TT-----ATA-------TAGTTGAA-ACAGTT--TATTAGCCATA--GATG--TATTTA--------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................TG-----ACCAAAGACCAA--GCG--ATA...............................................................................................................................................................................................................2011.0010010
.........................................................TCTGCGCAACACCATCTGAG--G....................................................................................................................................................................................................................................................................................................................................2111.0010010
...................................CGATCCGGAACCCAGGTAAGG............................................................................................................................................................................................................................................................................................................................................................2111.0010010
....................................................................................................GTGGAGA------------G-------------------------GTGGCAG-----------AGAAGT...........................................................................................................................................................................................................................................2111.0010010
.................................................................................CGATTC-CGCCTG-----AGTGGAGA------------G-------------------------GTGGCA.............................................................................................................................................................................................................................................................2711.0010010
.........................................................................................................................................................................G-----ACCAAAGACCAA--GCG--ATAATATC..........................................................................................................................................................................................................2411.0010010
........................ACCCTTCATTTCGATCCGGA........................................................................................................................................................................................................................................................................................................................................................................2011.0010010
................................TTTCGATCCGGAACCCAGGTAT..............................................................................................................................................................................................................................................................................................................................................................2211.0010100
........................................................................................CGCCTG-----AGTGGAGA------------G-------------------------GTGGCAG-----------A................................................................................................................................................................................................................................................2311.0010010
..........................................................................................CCTG-----AGTGGAGA------------G-------------------------GTGGC..............................................................................................................................................................................................................................................................1811.0010001
dm3
AAAGAACGAGTTCGAGTTCGGGATACCCTTCATTTCGATCCGGAATCCAGGTAAGGCTCTGCGCAACACCATCTAAG--GACGATTG-CGCCGG-----AATGGAGA------------G-------------------------CTGGCAG-----------AGAAGTG-----ACCAAAGACCAA--GCG--ATAATATCGTACA--TGCTTTAAAA----------------------------------------------CCATACACAATTATT--GTA-----AAATTGCGGC-----AACGTAATTGTAGCGCACAC--TTT-TT-----ATA-------TAGTTGAA-ACAGTT--TATTAGCCATA--GATG--TATTTATA----T---TAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................TG-CGCCGG-----AATGGAGA------------G-------------------------CTGG...............................................................................................................................................................................................................................................................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................GATTG-CGCCGG-----AATGGAGA------------G-------------------------CT.................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................................G-------------------------CTGGCAG-----------AGAAGTG-----ACCAA................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................AG-----------AGAAGTG-----ACCAAAGACCAA--GC.....................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................TT-----ATA-------TAGTTGAA-ACAGTT--T......................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................CGG-----AATGGAGA------------G-------------------------CTGGCAG-----------TT...............................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000
....................................................................................................ATGGAGA------------G-------------------------CTGGCAG-----------AGA..............................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................................................G-----AATGGAGA------------G-------------------------CTGGCAG-----------AG...............................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................ACCCTTCATTTCGATCCGGA........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................GACCAA--GCG--ATAATATCGT........................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................GGCAG-----------AGAAGTG-----ACCAAA...............................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GACGATTG-CGCCGG-----AATGGA...........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................CAACACCATCTAAG--GACGATTG-............................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ATACCCTTCATTTCGATCCG..........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................AATGGAGA------------G-------------------------CTGGCAG-----------AGAAG............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................G-CGCCGG-----AATGGAGA------------G-------------------------CTGGCAG-----------AGA..............................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................GAGA------------G-------------------------CTGGCAG-----------AGAAGTG-----ACCA.................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................ATACCCTTCATTTCGATCCGGAATC.....................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........TTCGAGTTCGGGATACCCTTC.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....AACGAGTTCGAGTTCGGG..............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TCTAAG--GACGATTG-CGCCGG-----AATGGAGA------------.............................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................ATTG-CGCCGG-----AATGGAGA------------G-------------------------C..................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TGGAGA------------G-------------------------CTGGCAG-----------AGAAGTG-----ACC..................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................ATCCGGAATCCAGGTAAGGCTC.........................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................AG--GACGATTG-CGCCGG-----AATGGA...........................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AACGAGTTCGAGTTCGGGATACCCTTC.....................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................AAAGACCAA--GCG--ATAATATCG.........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...........................................................................................................................................................................................................................................................................ATACACAATTATT--GTA-----AAATTGCGGC-----...................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................AG-----------AGAAGTG-----ACCAAAGACCAA--GA.....................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................TA-------TAGTTGAA-ACAGTT--TATTA..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.........GTTCGAGTTCGGGATACCC........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GATACCCTTCATTTCGATCCGGAATC.....................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................CCTTCATTTCGATCCGGAA.......................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................ATT--GTA-----AAATTGCGGC-----AACGT..............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ACGTAATTGTAGCGCACA................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................GACGATTG-CGCCGG-----AATGG............................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TACCCTTCATTTCGATCCGG.........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGTAAGGCTCTGCGCAACA................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................AATCCAGGTAAGGCTCTGCGCAC..................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................GCAG-----------AGAAGTG-----ACCAAAGACCAA--GC.....................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TACCCTTCATTTCGATCCGGA........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................AAGGCTCTGCGCAACACCATC...........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
................................................................................................................................................................................................................................................................................CAATTATT--GTA-----AAATTGCGGC-----...................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................GACCAA--GCG--ATAATATCGTACA--T..................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................GAAGTG-----ACCAAAGACCAA--GCG--ATA...............................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GAAGAACGAGTTTGAGTTCGGGATACCCTTCATTTCGATACGGAATCCAGGTAAGGCTCTGCGAAACACCATCTAAA--GACGATT----CTGG-----AGTGCAGA------------G-------------------------GTGGCAG-----------AGAAATG-----ACCAAAGACCAA--GCG--ATAATATCGTACA--TGCTTTAAAA----------------------------------------------ACATAAACAATTATT--GTA-----AAATTACGGC-----AACGTAATTGTAGCGCACAC--TTT-TT-----ATA-------TAGTTGAA-ACAGTT--TATTAGCCATA--GATA--TATTTAT---------TAAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................CTGG-----AGTGCAGA------------G-------------------------GTGGCAG-----------.................................................................................................................................................................................................................................................2011.0011000000
........................................CGGAATCCAGGTAAGGCTCTGCG.....................................................................................................................................................................................................................................................................................................................................................2311.0011000000
......CGAGTTTGAGTTCGGGATACCCTTCAT...................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
....................................GATACGGAATCCAGGTAAGGCTCTG.......................................................................................................................................................................................................................................................................................................................................................2511.0010100000
.........................................................................................................................................................................................................................................................................................................GGC-----AACGTAATTGTAGCGCACAC--TT...........................................................................2511.0011000000
......CGAGTTTGAGTTCGGGATACCCTT......................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.......................................................................TCTAAA--GACGATT----CTGG-----AGTGC............................................................................................................................................................................................................................................................................................................2211.0010000010
droYak3
GAAGAACGAGTTTGAGTTCGGGATACCCTTCATTTCGATACGGAATCCAGGTAAGGCTCTGCGAAACACCATCTAAG--GACGATT----CTGG-----AGTGGAGA------------G-------------------------GTGGCAG-----------AGAAATG-----ACCAAAGACCAA--GCG--ATAATATCGTACA--TGCTTTAAAA----------------------------------------------CCATAAACAATTATT--GTA-----AAATTACGGC-----AACGTAATTGTAGCGCACAC--TTT-TT-----ATA-------TAGTTGAA-ACCGTT--TATTAGCCATA--GATA--TATTTAT---------TAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................GAATCCAGGTAAGGCTCTGCGAAA..................................................................................................................................................................................................................................................................................................................................................2415.00500000000005
......................................................................................................................................................................AATG-----ACCAAAGACCAA--GCG--..................................................................................................................................................................................................................1911.00101000000000
........................................................................................................................................................................................................................................................................................................................................TT-TT-----ATA-------TAGTTGAA-ACCGTT--.......................................2111.00100000010000
.......................................................................................................................................................G-----------AGAAATG-----ACCAAAGACCAA--GCG--ATAAT.............................................................................................................................................................................................................2811.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................GTTGAA-ACCGTT--TATTAGCCATA--GA........................2511.00101000000000
..................................................................................GATT----CTGG-----AGTGGAGA------------G-------------------------GT.................................................................................................................................................................................................................................................................1911.00100000010000
.........................................................................................................................................................................................................CGTACA--TGCTTTAAAA----------------------------------------------CCATAAAC...................................................................................................................................2411.00101000000000
..........................................................CTGCGAAACACCATCTAAG--GA...................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...................GGGATACCCTTCATTTCGATACGGA........................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.....................................................................................................................................................................................................ATATCGTACA--TGCTTTAAAA----------------------------------------------CC.........................................................................................................................................2211.00101000000000
.........................................................................................................................................................................................................................................................................................................................TGTAGCGCACAC--TTT-TT-----ATA-------TAGT....................................................2411.00100010000000
droEug1
GAAAAACGAATTCGAATTCGGGATACCCTTCATATCGATCAGGAATCCAGGTAAGGCCCTGAGAAACACCATCTAAA--GACGATCCTGGCTGG-----AGTGGAGA------------GAAAGA-TAATG---AGAGAAAGCAGAGGGCAG-----------AGAAATGAA---ACCAAAGACCAA-AGCG--ATGATATCGTAAA--TGCTTTACAA---------------------------------------------CCCATA-ACAATTATT--GTA-----AAATTACAGA-----TATGTAATTGTAGCGCACAC--TTT-TT-----ATA-------TAGTTGAAAACATTT--TATTAGCCATAGACATA--TATTTATATA--T---ATAGSizeHit CountTotal NormTotal
No Reads
droBia1
GAAGAACGAGTTCGAGTTCGGGATACCCTTCATCTCGATCAGGAACCCAGGTAAGGCCCTGCGTAACACCATCTAAG--GACGATT----CCGG-----AGTGGAGA------------GAG-----------------------AGAGCAG-----------AGAAATG-----ACCAAAAACCAA-TGCG--ATAGCATCGTAAA--TGCTTTGCAA----------------------------------------------CCTTAAGCAATTATT--GTA-----AAATTACAGA-----AATGTAATTGTGGCGCACAC--ATT-TT-----ATG-------TAGTTACGAACATTT--TATTAGCCATA--GATA--TATTTATA---------GAGSizeHit CountTotal NormTotal
No Reads
droTak1
AAAGAACGAGTTCGAATTCGGGATACCCTTCATATCGATCAGGAATCCAGGTAAGGCCCTGCGAAACACCATCTAAG--GACGATT----CTGG-----AGTGGAGA------------GAGAGAA-------------AAGCAGAGGGCAG-----------AGAAATG-----ACCAAAGACCAA--GCG--ATAATA--------------------------------------------------------------------CAAACAATTATT--GTA-----AAATTACAGC-----AATGTAATTGTGGCGCACACACTTT-TT-----ATA-------TAGTTAAAGACATTT--TATTAGCCATA--GATA--TATTTATA---------TAGSizeHit CountTotal NormTotal
No Reads
droEle1
GAAGAACGAGTTCGAGTTCGGGATACCCTTCATATCGATCAGGAATCCAGGTAAGGCCCTGCGCAACACCATCTAAA--GGCGATA----CCGG-----AGTGGAGA------------GAGTGAGC--TGAGAGCTGAGTGCTGAGGGCAG-----------AGAAATG-----ACCAAAGACCAAAAGCG--ATAATATCGTAAATTTGCTTTAAAA----------------------------------------------CCATAACCAAATATT--GTA-----AAATTGCAGA-----CA------TGTGACGCACAA--CTT-TTTT---A--------------------------TATTAGCCATA--GATA--TATTTATA---------TAGSizeHit CountTotal NormTotal
No Reads
droRho1
GAAGAACGAGTTCGAATTCGGGATACCCTTCATATCGATCAGGAATCCAGGTAAGGCTCTGCGCAACACCATCTAGA--GACGATA----CTGG-----AGTGGATTGGAGTGGATA--GAG------------------AGCTGACAGCAG-----------AGAAATA-----ACTAATGACCAA-AGCG--ATAATATCGTAAACTTACTTTAAAA----------------------------------------------CCATAACCAAATATT--GTC-----AAATTACAGA-----CAC------GTCGCGCACAC--TTT-TG-----ATA-------TAGTTAAA-ACATTT--TATTAGCCATA--GATA--TATTTATA---------TAGSizeHit CountTotal NormTotal
No Reads
droFic1
GAAGAACGAGTTCGAGTTCGGGATACCCTTCATATCGATAAGGAACCCAGGTAAGGCCCTGCGCAACACCATCTAGT--GGATCTAA-CACTGAAGCGGAGCGGAGA------------GA------------------------AGAGAAG-----------AGAGACG-----ACCAAAGACCAA-AGCG--ATAATATCGTAAA--TGCTTTAAAG----------------------------------------------CCATAACCAAATATT--GTA-----AAACTACA-CATGGATGTGTAATTGCGGCGCACAC--TTT-TT-----ATA-------TAGTTGAAAACGTTT--TATTAGCCATA--GATA--TATTTATATA--TTGTATAGSizeHit CountTotal NormTotal
No Reads
droKik1
CAAGAATGACTTTGAGTTCGGCATACCGTTCATATCGATAAGAAACCCAGGTAAGGCGCTGCGCAACACAATCTAAG--GGCGCTGC-TACTGG-----AGCGGATA------TATAGAGAGAGAG-------------GAGCAGAGCGCA---------TA-------A-----ACTAAAGACCAA-AGCG--ATAATATCGTAAA--TGCTTTAAAA----------------------------------------------CTAAAACCAA---------------AAATAACCAA-----CCATTAATTGTAGCGCACAACATTT-TT-----ATG-------TAGTTTGA-ATGTTTTGTATTAGCAAAT--A----------ATG---------TAGSizeHit CountTotal NormTotal
No Reads
droAna3
GAAAAACGAGTTTGAGTTCGGGATACCCTTCATATCGATCCGGAATCCAGGTAAGGCCCTGCGCAACACCATCTGAGATGGCGATG----CTGG-----AATGGAGA------------GAGTGG-CAGTG---GCAG-GTGGAGAGACCAG-----------AGAAATG-----ACCA-TGACCAA--GAG---TA-------AAA--TGCGTATA--------------------------------------------------ATGTAGAGTTATT--GAA-----G------AGA-----ATTGTAATTTTAGCGCACAC--TTT-TG-----ATAAATCCAGTAGTTGAG-ACGTTT--TATTAGCCATATAGAAG--TATTTATACA--C---TTAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................ATAAATCCAGTAGTTGAG-AC.............................................2011.001010000
.....................................................................................G----CTGG-----AATGGAGA------------GAGTGG-CAGT..................................................................................................................................................................................................................................................................................2311.001010000
....................................................................................................................................................................................................................GTATA--------------------------------------------------ATGTAGAGTTATT--GAA-----G------AGA-----AT.................................................................................................2711.001010000
......................ATACCCTTCATATCGATCCGGA........................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droBip1
GAAAAACGAGTTTGAGTTCGGAATACCCTTCATATCGATTCGAAATCCAGGTAAGGCCCTGCGCAACACCATCTAAG--GTG--CTC-GGCTGG-----AGAGGAGA------------GTGG-----------------AGT---AACAAG-----------AGAAACC--ATGACCA-TGACCAA--AAG---TA-------AAA--TGCG------------------------------------------------------------------T--ATA-----ATGTTAGAGA-----ATCGTAATTTTAGCGCACAC--TTT-TG-----ATATATTTAGTAGTTGAG-ACATTT--TATTAGCCATATAGATA--TATTTATACA--C---TTAGSizeHit CountTotal NormTotal
No Reads
dp5
AAAGAACGAGTTTGAGTTCGGGATACCATTCATATCCATTAGGAATCCAGGTAAGACTCTACGCAGCACCATCTGAG--GAGAGC-------------------------------------------------------AGC---------AACAACAACAAACAAATG-----ACCAAAAAACTA--GAGTGG---------AAATGTGCTTTAAAG---------------------------------------------ATCGTAA-----TGTG--GT-TAAAA-CAATAGAAA-----TAAGTAATGGTAGCGCACAG--TTT-TTT--AGATA-------TAGTAG-----------------CAT-A------CG-----GTAT-AC-GGTTGAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................GC---------AACAACAACAAACAAATG-----ACC..................................................................................................................................................................................................................................2311.0010010000000
...............................................................................................................................................................................................GTGG---------AAATGTGCTTTAAAG---------------------------------------------ATC.........................................................................................................................................2211.0010000000001
.......................................TAGGAATCCAGGTAAGACTCT........................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................TGAG--GAGAGC-------------------------------------------------------AGC---------AACAA.......................................................................................................................................................................................................................................................1811.0010100000000
.....................................................................................................................................................................................AAACTA--GAGTGG---------AAATGTGCT...............................................................................................................................................................................................2111.0010100000000
...........................................AATCCAGGTAAGACTCTACGC....................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................GAAA-----TAAGTAATGGTAGCGC...................................................................................2011.0010000001000
......................................................................................................................................................................................AACTA--GAGTGG---------AAATGTGCTT..............................................................................................................................................................................................2111.0010000001000
droPer2
AAAGAACGAGTTTGAGTTCGGCATACCATTCATATCAATTAGGAATCCAGGTAAGACTCTACGCAGCACCATCTGAG--GAGAGC-------------------------------------------------------AGC---------AACAACAACAAACAAATG-----ACCAAAAAACTA--GAGTGG---------AAATGTGCTTTAAAG---------------------------------------------ATCGTAA-----TGTG--GT-TAAAA-CAATAGAAA-----TAAGTATTGGTAGCGCACAG--TTT-TTTTTAGATA-------TAGTAG-----------------CAT-A------CG-----GTAT-AC-GGTTGAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GAAAAACGAATTTGAATTCGGCATACCGTTTATATCGATTAGAAATCCAGGTAAGACCCTGCGCAATACGATCTGAG----CGATCT-AGCAGA-----AGTCAACT------------C-------------------------AAAGTAGAACAATATTAAATCAATG-----ACA------CTA--ACG--TA---AACGCAAA--TGCTTTAATA---------------------------------------------ATCGTAAAAACATATT--GTA-----TATTAA--------------TATTGTAGCACACAT--TTATTT-----ATA------ACAGTTAAC-TAAATT--TTTTAACAA-ATAGTTGTCCAATAATA----T---TAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................ATTGTAGCACACAT--TTATTT-----..................................................................2011.00100010
............................................................................................GA-----AGTCAACT------------C-------------------------AAAGTAGAACAATATT...................................................................................................................................................................................................................................................2711.00100010
......................................................GACCCTGCGCAATACGATCTGAG----CGAT...............................................................................................................................................................................................................................................................................................................................2711.00100010
...............................ATATCGATTAGAAATCCAGGTA...............................................................................................................................................................................................................................................................................................................................................................2211.00100010
..............................................................................................................................................................................................................................................................................................................................................................................TTTAACAA-ATAGTTGTCCAATA...............2211.00100010
droVir3
AAAGAATGAGTTTGAGTTCGGCATACCGTTCATATCGATTAGAAATCCAGGTAAGACACTGCGCACCACCATCTAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........GTTTGAGTTCGGCATACCGTT......................................................................................................................................................................................................................................................................................................................................................................................2115.005000000001100000000000010000000000000000100000000000000000000010
...........................................AATCCAGGTAAGACACTGCGC....................................................................................................................................................................................................................................................................................................................................................2114.004000000000000000000000000000100030000000000000000000000000000000
.AAGAATGAGTTTGAGTTCGGC..............................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000010000000000000001000000000000000000000000000000000000
...........TTGAGTTCGGCATACCGTTCA....................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000002000000000000000000000000000000000000000
..............................................CCAGGTAAGACACTGCGCACC.................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.....................................................AGACACTGCGCACCACCATC...........................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000100000000000000000000000000000000000000
.....ATGAGTTTGAGTTCGGCATAC..........................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
AAAGAATGAGTTTGAGTT..................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000001000000000000000000000000
..................................................GTAAGACACTGCGCACCACC..............................................................................................................................................................................................................................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
......TGAGTTTGAGTTCGGCATACT.........................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
.................................................GGTAAGACACTGCGCACCAC...............................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................AGGTAAGACACTGCGCACCAC...............................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................GTAAGACACTGCGCACCACCAT............................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
....AATGAGTTTGAGTTCGGCATA...........................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
........AGTTTGAGTTCGGCATACC.........................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
........AGTTTGAGTTCGGCATACCGTT......................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..............................................CCAGGTAAGACACTGCGCACCA................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
droMoj3
AAAGAATGAATTCGAATTCGGTATACCCTTCATATCGATCCGAAATCCAGGTAAGACACTGCGTAACACGATCTAAG--ATCTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................AGGTAAGACACTGCGTAACA................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
AAAGAATGAGTTTGAGTTCGGCATACCGTTCATATCTATAGGAAATCCAGGTAAGGCACTGCGGAACACTATTTAAG--CTCAAC---------------------------------------------------------------------------------AATG-----ACTA-----CAA--CCG--ATAACAA-----T--TGCCTTCATAGACCAAAAATATATATTTAACTAAACCAAAAAATAAGACGTAAAA-CGC--TTTAATTAGTTGGTA-----AAATTGTAAT-----TTAGTTTTTAGTACGCAATCAATTT-TT-----AAC-------TAGTTGTC-AAAT-------------------TA--TATTTATT----A---TTAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................CCAAAAAATAAGACGTAAAA-CGC--TTT...................................................................................................................................2611.00110

Generated: 05/19/2015 at 01:19 AM