ID:

dsi_22645

 Coordinate:

3r:10255558-10255658 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10254690_10255557_+]; CDS [3r_10254690_10255557_+]; CDS [3r_10255659_10255794_+]; exon [3r_10255659_10255794_+]; intron [3r_10255558_10255658_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------##################################################
ATCGCACGGAGCGGTTGAGCGATCTTCTGGACTGGCGCACCCTGGGCATTGTTAGTATTCATTGGGTTAACTTACGTCAAAGGTCGCGGAAGCGACCAATGCTTTTATTTTATAAAATCCAATTATTAACCCATGACACTTTCATTTGCAGTACTACAGACAGGCCAGGGTTAAGGCCCTGCAAGCTGTTTACCCAGACTA
**************************************************...(((..((((.(((((((.......((..((((((....))))))..)).((((((...))))))........))))))))))).)))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
........................TTCTGGACTGGCGCACCC............................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0
...............TGAGCGATCTTCTGGACTGGC..................................................................................................................................................................... 21 0 1 2.00 2 1 0 0 0 1 0 0 0
.....................ATCTTCTGGACTGGCGCA.................................................................................................................................................................. 18 0 1 2.00 2 0 2 0 0 0 0 0 0
................GAGCGATCTTCTGGACTGGCG.................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
......CGGAGCGGTTGAGCGATCTTCTGGACC........................................................................................................................................................................ 27 1 1 1.00 1 0 1 0 0 0 0 0 0
........................TTCTGGACTGGCGCACCCTGGGCATT....................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0
..........................CTGGACTGGCGCACCCTGGGCATTTAC.................................................................................................................................................... 27 3 1 1.00 1 0 0 1 0 0 0 0 0
.....................ATCTTCTGGACTGGCGCACCC............................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................TAAGGCCCTGCAAGTTGT............ 18 1 1 1.00 1 0 0 0 0 0 1 0 0
......................TCTTCTGGACTGGCGCACCCTGGGCATT....................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0
.....................ATCTTCTGGACTGGCGCACC................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
........................TTCTGGACTGGCGCACCCTGG............................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................CTTCTGGACTGGCGCACCCTGGGC.......................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................CTTCTGGACTGGCGCACCCTG............................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................TCTGGACTGGCGCACCCTGGGC.......................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
......................TCTTCTGGACTGGCGCACCCC.............................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
......CGGAGCGGTTGAGCGATCTGGTGGAC......................................................................................................................................................................... 26 2 1 1.00 1 0 0 0 1 0 0 0 0
..........................CTGGACTGGCGCACCCTGG............................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................CTTCTGGACTGGCGCACCCTGG............................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................ATTTTATTTTATAAACTCCAAT.............................................................................. 22 2 3 0.33 1 0 0 0 1 0 0 0 0
.....................................................GGTATTCATTGGGTTA.................................................................................................................................... 16 1 9 0.11 1 0 0 0 0 0 0 0 1
..........................................................................CGTCTAAGGTCCCGGA............................................................................................................... 16 2 13 0.08 1 0 0 0 0 0 0 1 0
.......GGGGCGGTTGACCGAACT................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 1 0 0 0
.................................................................................................AATGCTTTAATTTAATAAA..................................................................................... 19 2 20 0.05 1 0 0 0 0 0 1 0 0
.......................ATTCTGGCCTGGAGCACC................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 1 0 0 0
...................................................................................................................AATCCAATTATTAAG....................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

TAGCGTGCCTCGCCAACTCGCTAGAAGACCTGACCGCGTGGGACCCGTAACAATCATAAGTAACCCAATTGAATGCAGTTTCCAGCGCCTTCGCTGGTTACGAAAATAAAATATTTTAGGTTAATAATTGGGTACTGTGAAAGTAAACGTCATGATGTCTGTCCGGTCCCAATTCCGGGACGTTCGACAAATGGGTCTGAT
**************************************************...(((..((((.(((((((.......((..((((((....))))))..)).((((((...))))))........))))))))))).)))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR1275485
Male prepupae		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.......................................................................................................................................TGTGACAGTAAACCTGATGATGT........................................... 23 3 2 1.50 3 3 0 0 0
........................................................................................................................................GTGACAGTAAACCTGATGATGT........................................... 22 3 3 0.33 1 1 0 0 0
.................TCACTAGAAGGCCTGAC....................................................................................................................................................................... 17 2 8 0.13 1 0 1 0 0
.......................................................................................CCTTCGCTGGTTCCG................................................................................................... 15 1 9 0.11 1 1 0 0 0
.....................................................................................................................................................................................GTTCGCCAAATGGGCC.... 16 2 20 0.05 1 0 0 0 1
......................................................................................CCCTTCGCTGGTTCCG................................................................................................... 16 2 20 0.05 1 0 0 1 0

Generated: 04/24/2015 at 10:39 AM