ID:

dsi_22633

 Coordinate:

2r:14709103-14709252 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.9 -24.9 -24.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTAACAAAAAAAATTGTAAAAAGTAGCAAAAAATCGAGCGTGTTTGAGAAGTAAGTAGAGTGCAAAGCTATTGGTTTCAGTGGTGCAGTGAGTGAGAGGGCGCAACGCACGACAAAGCGAATGGGGAAATTTTCCTTTCCCATCACAATTTGCTTTGCTTGCGTTCGTTCTTCGCTCAAAGATGGCGTCTATAAACGCTAGATTGTCCGCAAATCGTGGTCTAGGGAATAAATTGTCGCATATTTTCGGG
**************************************************************************************...........((((((((.(((.....((((((((((((((.......))))))))......))))))))))))))))).*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M024
male body		 O001
Testis
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
..............................AAATCGAGCGTGTTTGAGAAGT...................................................................................................................................................................................................... 22 0 1 3.00 3 1 1 0 0 0 0 0 0 1 0 0 0 0
.....................AGTAGCAAAAAATCGAGC................................................................................................................................................................................................................... 18 0 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0
...........................................................................TGCAGTGTAGCAGTGAGTGAGA......................................................................................................................................................... 22 3 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0
.............TTGTAAAAAGTAGCAAAAAATCGAGCG.................................................................................................................................................................................................................. 27 0 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0
................................ATCGAGCGTGTTTGAGAA........................................................................................................................................................................................................ 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................AAAATCGAGCGTGTTTGAGA......................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................AATTTGCTTTGCTTGCGTTCG................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCTAGATTGTCCGCAAATCGT................................. 21 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0
............ATTGTAAAAAGTAGCAAAA........................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................AGAAAGTAGCAAGAAATCGAG.................................................................................................................................................................................................................... 21 2 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GCTAGATTGTCCGCAAATCG.................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..............................AAATCGAGCGTGTTTGAGAAG....................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................AGTGAGTGAGAGGGCGCAA................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................GCAAAAAATCGAGCGTGTTTGAGAA........................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................TTGAGAAGTAAGTAGAG.............................................................................................................................................................................................. 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................CAAAGATGGCGTCTATAAAC...................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................GTTCGTTCTTCGCTCAAAG..................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CGCAAATCGTGGTCTAGGGA....................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................ATCGAGCGTGTTTGAGAAGTAGA................................................................................................................................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................ATCGAGCGTGTTTGAGAAGTAGAC.................................................................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................CAAAAAATCGAGCGTGTTTGA........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......AAAAAAATTGTAAAAAGTAGCAAA............................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................AAAGCTATTGGTTTCAGTGGT...................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................AAAGTAGCAAAAAATCGAGCGTG................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CTGGATTGTCCGCAAGTCGTG................................ 21 2 2 1.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
........................AGCAAAAAATCGAGCGTGTTTGAGAA........................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................AAAAGTAGCAAAAAATCGAGCGTGT............................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.............................AAAATCGAGCGTGTTTG............................................................................................................................................................................................................ 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................GCAAAAAATCGAGCGTG................................................................................................................................................................................................................ 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................AATCGAGCGTGTTTGAGAAGTAGA................................................................................................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................AAAAGTAGCAAAAAATCGAGCGTGTT.............................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................GTAGCAAAAAATCGACCGTGTT.............................................................................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................AAATCGAGCGTGTTTGAGAAGTAGAC.................................................................................................................................................................................................. 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................AAAAAATCGAGCGTGTTT............................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GCAGGTCGTGGTCTGGGGAAT..................... 21 3 3 1.00 3 0 0 0 0 0 3 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATTGTCCGCAAATCGTGGTC............................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................AGTAGAGTGCAAAGCTATT.................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GCAAATCGTGGTCTAGGGAATAAA.................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................GCTTTGTTTGCGTTCGTTCTTT............................................................................. 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................TGCAGTGTAGCAGTGAGTGAG.......................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................AAAATGTCGCATCTTTTCGG. 20 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................ATATTTTCCTTTCCCAGCACTA...................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................TTGAGAGGTGGGTAGAGTGCA.......................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AATTGTGGTCTAGGGACTAG................... 20 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................TAAGTAGATTGGAAAGCGATT.................................................................................................................................................................................. 21 3 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................TACAATTTGCTTTGCTT.......................................................................................... 17 1 15 0.13 2 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TACAGAGCGAATGGGGAA.......................................................................................................................... 18 2 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................TTTGCGTTGCTTGGGTTC.................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.................................TCTAGCGGGTTTGAGA......................................................................................................................................................................................................... 16 2 15 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................TCTAGCGTGTGTGAGA......................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................AAGATATGGGTTTCAGT......................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................CATCACAGTCTGATTTGCT........................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CATTGTTTTTTTTAACATTTTTCATCGTTTTTTAGCTCGCACAAACTCTTCATTCATCTCACGTTTCGATAACCAAAGTCACCACGTCACTCACTCTCCCGCGTTGCGTGCTGTTTCGCTTACCCCTTTAAAAGGAAAGGGTAGTGTTAAACGAAACGAACGCAAGCAAGAAGCGAGTTTCTACCGCAGATATTTGCGATCTAACAGGCGTTTAGCACCAGATCCCTTATTTAACAGCGTATAAAAGCCC
***********************************************************************************...........((((((((.(((.....((((((((((((((.......))))))))......))))))))))))))))).************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...........................................................................................................................................................................AGCGAGTTTCTACCGCAGGTGTTT....................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................CCAAAGTCGCCACGTCGCTCA............................................................................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TGCGATCTAACAGGCGTTTAG................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................GCAAGCAAGAAGCGAGTTTCT.................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................AGGCGTTTAGCACCAGATCCCTT...................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................ACAGGCGTTTAGCACCAGATC.......................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................TTGCGTGCTGTTTCGCTTACC.............................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................AGGCGTTTAACACCAGATCCCT....................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................CGAGTTTCTACCGCAGATGTTT....................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GATATTTGCGATCTAACAGGC......................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................AGATATTTGCGATCTAACAGT.......................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTGCGATCTAACAGGCGTTTA.................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................TAACAGGCGTTTAGCACCAGGT........................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................TGCTGTATCGCTTTCCCC............................................................................................................................ 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0
.....................................................TCAGGTCACGTTTCGATA................................................................................................................................................................................... 18 2 8 0.38 3 0 0 0 0 1 1 0 1 0
....................................................TTCAGGTCACGTTTCGATA................................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................TCCAGCAGGCGTTTAGC.................................. 17 2 8 0.13 1 0 0 0 1 0 0 0 0 0
....................................................TTCAGGTCACGTTTCGAT.................................................................................................................................................................................... 18 2 9 0.11 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................TTAAAAGTAAATGGTACTGTT...................................................................................................... 21 3 18 0.06 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................CCATTCAAAAGGAAAGGGTC........................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:14709053-14709302 + dsi_22633 ----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AA-TCGAGC--G--TGTTTG-AGAAGTAAGTAGAG-TGCAA---AGCTA----------------TTGGTT-T--------------------------CA--G-TGG--TGCAGT-GAGTGAGA--GGGCGCAACGCA-CGACAA-AGCGAATG-GGGAAATTTTCCTTTCCCATCACAATTTGCTTTGCTTGCGTTCGTTCTTC---GCT-----------------------------CAAAGATGGCGTC-TATA-AACGCTA-GATTGTCCGCA-A-A-TCGTGG-TCT--------------------------------------AGGGAATA---------AA---------------------------------------------------------------TTGTCGCATATTTTCGGG
droSec2 scaffold_1:11518293-11518541 + ----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AA-TCGAGC--G--TGTTTG-AGAAGTAAGTAGAT-TGCAA---AGCTA----------------TTGGTT-T--------------------------CA--G-TGG--TGCAGT-GAGTGAGA--GGGCGCAACGCA-CGACAA-AACGAATA-GGGAAATTTTCCTTTCTCATCACAATTTGCTTTGTTTGCGTTCGTTCTTC---GCT-----------------------------CAAAGATGGCGTC-TATA-AACGCTA-GATTGTCCTCA-A-A-TCGTGG-TCT--------------------------------------AGGGACT----------AG---------------------------------------------------------------TTGTCGCATATTTTCGGG
dm3 chr2R:14028408-14028659 + ----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAAA------AAATCGAGC--G--TGTTTG-AGAAGTAAGTACAG-TGTAA---AGCTA----------------TTGGTT-A--------------------------CA--A-TGG--TGTAGA-GAGTGAGA--GGGCGCAACGCA-CGACAA-AGCGAATA-GGGAAATTTTCCTTTCCCATCGAAATTTGCTTTGTTTGCGGTCGTTCTTC---GCT-----------------------------CAAAGATGGCGTC-TATA-AACGCCA-GATTGCCCGCAAA-A-TAGTGG-TCT--------------------------------------AGGAACT----------AG---------------------------------------------------------------TTGTCGCATATTTTCGAG
droEre2 scaffold_4845:8247106-8247352 + ----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGCTTGGAGAAGTAAGTACAG-TGCAA---AGCTA----------------TTGGTTTT--------------------------TA--G-TAG--TGGAAC-GAGTGAGA--GGGCGCGACGCA-AGACAA-AGCGAATA-GTGAAATTTT------TCATCGAAATTTGCTTTG----TAGTCGTTCTGC---GCT-----------------------------CAAAAATGGCATA-TAGA-AAAGGCA-GCTTGACCGCAGA-A-TCGTGG-TCT--------------------------------------AGGGGCC----------ATAT-------------------------------------------------------------TTGTCGCATATTTTCGGG
droYak3 2R:15157994-15158246 - ----------GTAACAAAAAAAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGTTTGGAGAAGTAAGTACAG-TGCAA---AGCTA----------------TTCGTTTT--------------------------TA--G-TGG--TGGAAC-GAGTGAGA--GGGCGCGACGCA-AGACAA-AGCGTACA-GGGAAATTTT-----CCCATCGAAATTTGCTTTGTTTGTGGTCGTTGCTC---GCT-----------------------------CTAAGATGGCGTC-TAGA-AATGCCA-GCTTGGCCACAGA-A-TTGTGC-TAT--------------------------------------ATGCCCC----------ATAT-------------------------------------------------------------TTGTCGTGAAATTTCGGG
droEug1 scf7180000409672:1066913-1067161 - ----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AA-TCGAGCAAG--TGTTTG-AAAAGTAAGTACGG-TGCAA---AGAAA----------------ATGGAA-T--------------------------TA--G-AGG--AATGGT-GAACAAGA--GGGCGCGACGCG-AGACAA-AGCGAATG-GGTA-ATTTT-----CCCAGCAAGACTTTTCTTGCTTGTCGTCACTGCCCGTGTCT-----------------------------TAAAGATGGCGGC-CCAA-AGCGTGA-ACTTATTCGCAGA-A-TCGCGG-GCA--------------------------------------AGGGTCT----------CA---------------------------------------------------------------TGTTTGTAAATTTTTGCG
droBia1 scf7180000301754:2509279-2509522 - ----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGC--G--TGTTTG-CAAAGTAAGTACCA-TGGCG---GACGAGC--------------GTGGAA-C--------------------------GA--G-------CGAGA-GAGTGAGA--GGGGGCGACGCG-TGACAA-GGCGAGTG-GGGAAATTTT-----CCCAGCGAACTTCGTCTTGTTTCGCCTCGCCCGCC---TCT-----------------------------CAAAGATGGCGTC-ATAG-AACGCCA-ACCTATTCCCATA-A-TCGCGG-GCA--------------------------------------AGGCTCC----------AA---------------------------------------------------------------CGATTGTGAATTTTCGCG
droTak1 scf7180000415795:387814-388062 + ----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGTTTG-AAAAGTAAGTAGAG-TGAG----AGTGC----------------CTGGGG-C--------------------------TG--C-CAG--CGGAGC-GAGCGAGA--GGGCGCGACGCG-AGACAA-AGCGAATG-GGGAAATTTT---TCCCCAGCGAAACTCGCCTCGTTTCGGCTGCCCCCCC---GTT-----------------------------CAAAGATGGCGCC-TAGG-AGCGCCA-AGTTATCCGCTGA-A-CGGCGG-GCC--------------------------------------ATTGCCC----------AG---------------------------------------------------------------CAATCGCATATTTTCGCG
droEle1 scf7180000491214:173712-173935 - ----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------TATTCGAGCAAG--TGTTTG-AAAAGTAAGTAGAG-TGCAG----GGGA----------------CTGGAA-G--------------------------TG--G-TGC--AGGAGA-GAGCAAGA--GGGCGCGACGCG-AGACAA-AGCGATTG-GGGA-ATTTT-----GCCAGCGCA-TTTGTCGCGTTTGCAGTCGCCCTTT---TGG-----------------------------CCAAGATGGCGAC-TGGA-AACGTGA-ACTTTTTCGCATT-A-TC------------------------------------------------------------------------------------------------------------------------------------CGCAT-TAGTCGAG
droRho1 scf7180000779949:78328-78552 - ----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AA-TCGAGCAAG--TGTTTG-AAAAGTAAGTAGAG-TGCAG----GGGA----------------CTGGAA-T--------------------------TT--G-CGG--AGGAGA-GAGCGAGA--GGGCGCGACGCG-AGACAA-AGCGAATG-TAAAAATTTT------TTAGTTCAATTCGTAGCGCTTGCAGACGCCCTTT---TGG-----------------------------CCAAAATGGCGAC-TGGA-AACGTGA-ACTTTTTTGTAGA-A-TC------------------------------------------------------------------------------------------------------------------------------------TGCATATTTTCGCG
droFic1 scf7180000453948:1408859-1409104 - ----------GAAACAAAA-AAAATTGTAAAAAGTAGCAAAA--------ATTCGAGCAAG--TGTGTG-AAAAGTAAGTAAAG-TGCCA---AACAA----------------CTA-AA-T--------------------------TG--G-TTC--ATGGGT-GAGCAAGA--GGGCGCGACGCA-AGACAA-AGCGAACG-GGGACATTTT-----CCCTGCGGAATGTGTCGCGTTTGTGGTCGACAGTC---GTT-----------------------------TAAAAATGGCGGC-TGGA-AACGTGGATTTATTATCCCGGAG-TCCTGG-ACA--------------------------------------GGGGTCT----------AG---------------------------------------------------------------A--GAGAATATTTTTGCG
droKik1 scf7180000302682:1210536-1210772 + ----------GCAACAAA--AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGTTTG-AAAAGTAAGTACAT-CGTGTGG-AGTG-------------------------------------------------------TCT-----GCAGCAGAGCG-GG--GGGAGCGACGCG-AGACAAGAGCGATTG-TGGA-ATTTT-----TCTCGCGAATTTCGTCTCGTTTGACGGTGTCATCA---G-GCC-----------------------------AAGATGGCGTCGTAAA-AGCTTAA-ACTTTTTCGCAGA-A-TCGCGA-GGA--------------------------------------AAGATCC----------AT---------------------------------------------------------------CGATTGTGTATTTTCGCT
droAna3 scaffold_13266:2772332-2772599 + ----------TCAACAAA--AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGTTTG-A-AAGTAAGTACAA-AGAACGAA--CAAGCGCTGCTCTGCTGTA-TGTA--AGAGCGAGAGGTTCCGGGGCTTGGGGCGGCCGAC--GAGGCAGT-TGGGGAAA----GCCAAAAGCGTAGACAA-AGCAAATGAGTGTAATTTT-----TCCTGCGAAATGGGT-T-----------GACGTTA---A-ATC-----------------------------AAAATGGCGGC-GTGC-TAGGCCAGGATTGTGCGAA-A-AAGC-TG------------------------------------------------CT----------AT---------------------------------------------------------------TTTGCGTACAATTTCGCA
droBip1 scf7180000396427:1254494-1254748 + ----------GCAACAAA--AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGTTTG-A-AAGTAAGTACAT-TAAACGAA--CGCCCG-----------TATTGTGC-G-------TGGTGCAGGGGCTTGG-GCAGCGGCG--GCGGCAGT-TGGGGAAA----GC-CAAAGCGTAGACAA-AGCAAATG-TGCA-ATTTT-----TTCTGCGAA-TTTGGTT-----------GACGTTT---A-GAC-----------------------------AAAATGGCGGC-GAAATGATGTAG-GATTCTGCGAA-A-A-GC-TGCTGCT--------------------------------------AACCCACA---------A-----------------------------------------------------------------TATTGCAGAA-TTCGTG
dp5 3:6628895-6629114 + ----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGTTTA-A-GCGTAAGTAGGA-GAAATGAA--G-------------------------------------------------------------A------C-GACGGAAA--ACGGGCGAAGCAGGGGCAC-AGAGAATG-CGGA-ATTTT------CTTGTGAAATGTGGCTCGATGAACGTCGACGTCG---A-CGC-----------------------------AAGATGGCGATGTGAA-AACGTGA-TTTTTGGCTCTGA-A-AAGCAT-GAAAGGGCCCAGCCCC-----------------------------------------------------------------------------------------------------------------------GTGGTG
droPer2 scaffold_2:6849680-6849899 + ----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGTTTA-A-GCGTAAGTAGGA-GAAATGAA--G-------------------------------------------------------------A------C-GACGGAAA--ACGGGTGAAGCAGGGGCAC-AGAGAATG-CGGA-ATTTT------CTTGTGAAATGTGGCTCGATGAACGTCGACGTCG---A-CGC-----------------------------AAGATGGCGATGTGAA-AACGTGA-TTTTTGGCTCTGA-A-AAGCAT-GAAAGGGCCCAGCCCC-----------------------------------------------------------------------------------------------------------------------GTGGTG
droWil2 scf2_1100000004512:1808857-1808924 + -----------TAACAAAA-AAAATTGTAAAAAGTAGCAAAAATATAAAATTTCGAGCAAGTGTGTTGA-AACCGTAAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:8661621-8661866 + AATATAAAAAGCAACCAAA-AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGCTGA-AAACGTAAGTACGATTGCAA---ATACA---------------------------------------------------------------------------AAA-C-GA-----CG-ATACGA-AGCAAATT-CG-AAATTTT------CTTGTGAAATGTGATTCGTGTG----------CC---A-CGCAAGATGGCGACGTAAGCTGCTGTCGTTCAAAAAGAGCGCA-------------GTAAATTGA-AAAG-A-AAACGA-ACAAAGACCCAGCCCATTGTCTGACTTGCAT-------------------------------------------------------------------------------------------------GTTAAA-TTCTGT
droMoj3 scaffold_6496:18540129-18540389 - ----------GCAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGCTGA-AAACGTAAGTACAAAT-----------------------------------------------------------------------A------C-TACTGCAAAA-TTCCCA------ATGCAA-AGCAAAAT-TA-AAATTTT------CTTGTGAAATGTGATTCGTGTG----------CC---A-CGCAAGATGGCGACGTAAGC---TGTCGTCCAAACAGAGCGCA-------------GTAAATTGCTAAAG-A-AAACGA-ACAAAGACCCAGCCCACTGTATGATTTGCATATTGAGTTG---ACTATAAAAGATGATAT---------------------------------------------------------------ATTTA------ATATGAG
droGri2 scaffold_15245:2063143-2063408 + ----------GTAAG----------------------------------------------------------------TACGATC-----------------------------------------------------------------------G------C-AACAGC-------GAAGACATG-AGACAA-AGAG---A-CG-AAATTTT------CTTGTGAAATGTAATTCGTGTG----------CC---A-CGCAAGATGGCGACGTAAGC---TATCGTCAAAAAAGAGCACA-------------GTAAATCGCCAAAG-A-AATCGA-ACAAAGACCCAGCCCACTGTATGATTTGTAAATTGTATTGTGTACTTT----------ATATTACTATGAGATTTTCTATGCAAATTACCGTAAATTAGTTCTTATGCTGCGGGCTAGACATATGCATGTATGTGTATGTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AA-TCGAGC--G--TGTTTG-AGAAGTAAGTAGAG-TGCAA---AGCTA----------------TTGGTT-T--------------------------CA--G-TGG--TGCAGT-GAGTGAGA--GGGCGCAACGCA-CGACAA-AGCGAATG-GGGAAATTTTCCTTTCCCATCACAATTTGCTTTGCTTGCGTTCGTTCTTC---GCT-----------------------------CAAAGATGGCGTC-TATA-AACGCTA-GATTGTCCGCA-A-A-TCGTGG-TCT--------------------------------------AGGGAATA---------AA---------------------------------------------------------------TTGTCGCATATTTTCGGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................A-------AA-TCGAGC--G--TGTTTG-AGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300010000001100000
................................AGTAGCAAAA-------AA-TCGAGC--.....................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00300300000000000000
........................TTGTAAAAAGTAGCAAAA-------AA-TCGAGC--G--..................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000000020000000
..................................................A-TCGAGC--G--TGTTTG-AGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200010000001000000
........................................AA-------AA-TCGAGC--G--TGTTTG-AGA........................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020000000000000
....................................................................................................................................................................................................................................AATTTGCTTTGCTTGCGTTCG........................................................................................................................................................................................................................................2112.00200000000002000000
........................................................................................................................................................................................................................................................................................................................GCTA-GATTGTCCGCA-A-A-TCGT................................................................................................................................................2112.00200000010001000000
.......................ATTGTAAAAAGTAGCAAAA-------................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
........................................................................................................................................................................................................................................................................................................................GCTA-GATTGTCCGCA-A-A-TCG.................................................................................................................................................2011.00100000100000000000
.........................................A-------AA-TCGAGC--G--TGTTTG-AGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
..................................................................................................................................................................AGT-GAGTGAGA--GGGCGCAA.........................................................................................................................................................................................................................................................................................................1911.00100000000000001000
....................................GCAAAA-------AA-TCGAGC--G--TGTTTG-AGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
..................................................................TTG-AGAAGTAAGTAGAG-............................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
..................................................................................................................................................................................................................................................................................................CAAAGATGGCGTC-TATA-AAC.........................................................................................................................................................................2011.00100100000000000000
....................................................................................................................................................................................................................................................GTTCGTTCTTC---GCT-----------------------------CAAAG..........................................................................................................................................................................................1911.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................CGCA-A-A-TCGTGG-TCT--------------------------------------AGGGA...............................................................................................2011.00100000010000000000
..................................................A-TCGAGC--G--TGTTTG-AGAAGTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
..................................................A-TCGAGC--G--TGTTTG-AGAAGTAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.....................................CAAAA-------AA-TCGAGC--G--TGTTTG-A..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
................AAA-AAAATTGTAAAAAGTAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
........................................................................................AA---AGCTA----------------TTGGTT-T--------------------------CA--G-TGG--T.................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..............................AAAGTAGCAAAA-------AA-TCGAGC--G--TG................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
...................................AGCAAAA-------AA-TCGAGC--G--TGTTTG-AGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.............................AAAAGTAGCAAAA-------AA-TCGAGC--G--TGT...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
........................................AA-------AA-TCGAGC--G--TGTTTG-...........................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
....................................GCAAAA-------AA-TCGAGC--G--TG................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.................................................AA-TCGAGC--G--TGTTTG-AGAAGTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.............................AAAAGTAGCAAAA-------AA-TCGAGC--G--TGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.........................................A-------AA-TCGAGC--G--TGTTTG-AGAAGTAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
......................................AAAA-------AA-TCGAGC--G--TGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................ATTGTCCGCA-A-A-TCGTGG-TC...........................................................................................................................................2011.00100001000000000000
.............................................................................AGTAGAG-TGCAA---AGCTA----------------TT.............................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................GCA-A-A-TCGTGG-TCT--------------------------------------AGGGAATA---------AA---------------------------------------------------------------..................2411.00101000000000000000
droSec2
----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AA-TCGAGC--G--TGTTTG-AGAAGTAAGTAGAT-TGCAA---AGCTA----------------TTGGTT-T--------------------------CA--G-TGG--TGCAGT-GAGTGAGA--GGGCGCAACGCA-CGACAA-AACGAATA-GGGAAATTTTCCTTTCTCATCACAATTTGCTTTGTTTGCGTTCGTTCTTC---GCT-----------------------------CAAAGATGGCGTC-TATA-AACGCTA-GATTGTCCTCA-A-A-TCGTGG-TCT--------------------------------------AGGGACT----------AG---------------------------------------------------------------TTGTCGCATATTTTCGGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................AAA-------AA-TCGAGC--G--TGTTTG-AGA........................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030030
.........................................A-------AA-TCGAGC--G--TGTTTG-AGA........................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030120
.........................................A-------AA-TCGAGC--G--TGTTTG-AGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200
..................................................A-TCGAGC--G--TGTTTG-AGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020020
.........................................A-------AA-TCGAGC--G--TGTTTG-AGAAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020020
........................................AA-------AA-TCGAGC--G--TGTTTG-AGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
....................AAAATTGTAAAAAGTAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.........................................................................AGTAAGTAGAT-TGCAA---AGCTA----------------...............................................................................................................................................................................................................................................................................................................................................................................2111.0010100
...............................................................................................................................................................................................................................................................................................................................................GTGG-TCT--------------------------------------AGGGACT----------AG---------------------------------------------------------------TTGTCT............2211.0010001
............................................................................................................................................................G--TGCAGT-GAGTGAGA--GGGCG............................................................................................................................................................................................................................................................................................................2011.0010100
........................................AA-------AA-TCGAGC--G--TGTTTG-AGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
...............AAAA-AAAATTGTAAAAAGTAGCAAAA-------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
......................................AAAA-------AA-TCGAGC--G--TGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
....................................................TCGAGC--G--TGTTTG-AGAAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..................................................A-TCGAGC--G--TGTTTG-AGAAGTAG...................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..................A-AAAATTGTAAAAAGTAGCAAAA-------................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
...............................AAGTAGCAAAA-------AA-TCGAGC--G--TGT...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
..................................................................................................................................................................................................................................................................................................................................TCCTCA-A-A-TCGTGG-TCT--------------------------------------AGGGTT..............................................................................................2311.0011000
.......................................AAA-------AA-TCGAGC--G--TGTTTG-AGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
................................AGTAGCAAAA-------AA-TCGAGC--G--TGTTTG-...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
.........................................A-------AA-TCGAGC--G--TGTTTG-AGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..................................................A-TCGAGC--G--TGTTTG-AGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...............................................................TGTTTG-AGAAGTAAGTAGAT-TGCAA---A...................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
..........................................................................................................................................................................................CA-CGACAA-AACGAATA-GGGA................................................................................................................................................................................................................................................................................2011.0010010
.......................................AAA-------AA-TCGAGC--G--TGTTTG-AGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
......................................AAAA-------AA-TCGAGC--G--TGTTTG-AGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
..................................................A-TCGAGC--G--TGTTTG-AGAAGTAA...................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
...................................................................................................................................................................................................................................................................................................................................................................................................T----------AG---------------------------------------------------------------TTGTCGCATATTTTCGGG2111.0010100
.................................GTAGCAAAA-------AA-TCGAGC--G--T.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
....................................................TCGAGC--G--TGTTTG-AGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
........................................AA-------AA-TCGAGC--G--TGTTTG-A..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...................................AGCAAAA-------AA-TCGAGC--G--TGTTTG-...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
......................................AAAA-------AA-TCGAGC--G--TGTTTG-A..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
..................................................A-TCGAGC--G--TGTTTG-AGAAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
......................................AAAA-------AA-TCGAGC--G--TGTTTG-AGA........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
........................................AA-------AA-TCGAGC--G--TGTTTG-AGA........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
.................................................AA-TCGAGC--G--TGTTTG-AGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
......................................AAAA-------AA-TCGAGC--G--TGTTTG-AGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
....................................................................................................................................................CA--G-TGG--TGCAGT-GAGTGAGA--GGG..............................................................................................................................................................................................................................................................................................................2311.0010001
...................................AGCAAAA-------AA-TCGAGC--G--TGT...............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...................................AGCAAAA-------AA-TCGAGC--G--TGTTTG-AGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
..............................AAAGTAGCAAAA-------AA-TCGAGC--G--TGT...............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
.................................................AA-TCGAGC--G--TGTTTG-AGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
dm3
----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAAA------AAATCGAGC--G--TGTTTG-AGAAGTAAGTACAG-TGTAA---AGCTA----------------TTGGTT-A--------------------------CA--A-TGG--TGTAGA-GAGTGAGA--GGGCGCAACGCA-CGACAA-AGCGAATA-GGGAAATTTTCCTTTCCCATCGAAATTTGCTTTGTTTGCGGTCGTTCTTC---GCT-----------------------------CAAAGATGGCGTC-TATA-AACGCCA-GATTGCCCGCAAA-A-TAGTGG-TCT--------------------------------------AGGAACT----------AG---------------------------------------------------------------TTGTCGCATATTTTCGAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................GTGG-TCT--------------------------------------AGGAACT----------AG---------------------------------------------------------------TTGTC.............21134.003400000000000000000000000000000000000000000000000000000027000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000020000000000000000000000000000000000000000000000000100000000000000000000000000000000000010200000000000
......................................AAAAA------AAATCGAGC--G--TGTTTG-AGA........................................................................................................................................................................................................................................................................................................................................................................................................................24113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000710200000000000000000000000000000000000000000000000000000000000000000000000000001000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AA------AAATCGAGC--G--TGTTTG-AGA........................................................................................................................................................................................................................................................................................................................................................................................................................21113.00130000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000100000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000010000000
............................................................................................................................................................................GA--GGGCGCAACGCA-CGACAA-AGC..........................................................................................................................................................................................................................................................................................23110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000226000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AATCGAGC--G--TGTTTG-AGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000003
...................................................ATCGAGC--G--TGTTTG-AGAAG......................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000101000100000000000000000000000000000000000000
........................................AAA------AAATCGAGC--G--TGTTTG-A..........................................................................................................................................................................................................................................................................................................................................................................................................................2016.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000200000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................ATCGAGC--G--TGTTTG-AGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CAAAGATGGCGTC-TATA-AACG........................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000000000000000000000000000000000000000000000010000
.........................................AA------AAATCGAGC--G--TGTTTG-A..........................................................................................................................................................................................................................................................................................................................................................................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................CGAGC--G--TGTTTG-AGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000
..........................................A------AAATCGAGC--G--TGTTTG-AGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
........................................AAA------AAATCGAGC--G--TGTTTG-AGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................ATCGAGC--G--TGTTTG-AGAAGTAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................................................................................................................................................................GAAATTTGCTTTGTTTGCGGT..........................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AATCGAGC--G--TGTTTG-AGAAGTAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................AATCGAGC--G--TGTTTG-AGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000010000000000000010000000000000000000000000
.........................................AA------AAATCGAGC--G--TGTTTG-...........................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000001100000000000000000000000000000000000000
..........................................A------AAATCGAGC--G--TGTTTG-A..........................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000000000000000000000
......................................................GAGC--G--TGTTTG-AGAAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................AAATCGAGC--G--TGTTTG-AG.........................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................GCTTTGTTTGCGGTCGTTCTTC---...............................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................AA------AAATCGAGC--G--TGTTTG-AG.........................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000100000000000000000000000000000
.........................................AA------AAATCGAGC--G--TGTTTG-AGAAGTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
................AAA-AAAATTGTAAAAAGTAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................AAAAA------AAATCGAGC--G--TGTTTG-...........................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............AAAA-AAAATTGTAAAAAGTAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTTGTTTGCGGTCGTTCTTC---G..............................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000001000000000
...................................................ATCGAGC--G--TGTTTG-AGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000000
..........................GTAAAAAGTAGCAAAAA------AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000
.......................................................AGC--G--TGTTTG-AGAAGTAG...................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..........................................A------AAATCGAGC--G--TGTTTG-AGA........................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000
..........................................A------AAATCGAGC--G--TGTTTG-AGAAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000000000000
............AACAAAA-AAAATTGTAAAAAGTAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AAA------AAATCGAGC--G--TGTTTG-AGA........................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TAGTGG-TCT--------------------------------------AGGAACT----------AG---------------------------------------------------------------TTG...............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
...................................................ATCGAGC--G--TGTTTG-AGAAGTA....................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................CGACAA-AGCGAATA-GGGA................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CT----------AG---------------------------------------------------------------TTGTCGCATATTTTCGAG2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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...................................AGCAAAA-------AATTCGAGCAAG--TGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
........................................................GCAAG--TGCTTGGAGAAGTAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
......................AATTGTAAAAAGTAGCAAAA-------................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.................................................AATTCGAGCAAG--TGCTTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
........................................................GCAAG--TGCTTGGAGAAGTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
...............AAAA-AAAATTGTAAAAAGTAGCAAAA-------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000010
..................................................ATTCGAGCAAG--TGCTTGGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.........................................................CAAG--TGCTTGGAGAAGTAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................2150.2011000000
.........................................................CAAG--TGCTTGGAGAAGTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................2050.2010000100
droYak3
----------GTAACAAAAAAAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGTTTGGAGAAGTAAGTACAG-TGCAA---AGCTA----------------TTCGTTTT--------------------------TA--G-TGG--TGGAAC-GAGTGAGA--GGGCGCGACGCA-AGACAA-AGCGTACA-GGGAAATTTT-----CCCATCGAAATTTGCTTTGTTTGTGGTCGTTGCTC---GCT-----------------------------CTAAGATGGCGTC-TAGA-AATGCCA-GCTTGGCCACAGA-A-TTGTGC-TAT--------------------------------------ATGCCCC----------ATAT-------------------------------------------------------------TTGTCGTGAAATTTCGGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................AATTCGAGCAAG--TGTTTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................2014.00402000020000
..................................................ATTCGAGCAAG--TGTTTGGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................2113.00301000020000
..................................................ATTCGAGCAAG--TGTTTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................1913.00302000010000
...................................AGCAAAA-------AATTCGAGCAAG--TGTTTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................2712.00201000010000
.................................GTAGCAAAA-------AATTCGAGCAAG--T.................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00201000010000
......................................................GAGCAAG--TGTTTGGAGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.........................................................CAAG--TGTTTGGAGAAGTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
........................................AA-------AATTCGAGCAAG--TGTTTGGAGAAA......................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.....................................................CGAGCAAG--TGTTTGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
......................AATTGTAAAAAGTAGCAAAA-------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
........................................AA-------AATTCGAGCAAG--TGTTTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
............................................................................................................................................................................................................................................................................................................GTC-TAGA-AATGCCA-GCTT................................................................................................................................................................1811.00100000100000
..............................................................................................................................................................................................................................................GTTTGTGGTCGTTGCTC---GCT-----------------------------CTAAGAT........................................................................................................................................................................................2711.00100000010000
..............................AAAGTAGCAAAA-------AATTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...................................AGCAAAA-------AATTCGAGCAAG--T.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.......................ATTGTAAAAAGTAGCAAAA-------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
....................................GCAAAA-------AATTCGAGCAAG--TGTTTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
..................................TAGCAAAA-------AATTCGAGCAAG--TGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.......................................AAA-------AATTCGAGCAAG--TGTTTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.....................................................CGAGCAAG--TGTTTGGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
......................................AAAA-------AATTCGAGCAAG--TGTTTGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..................................................ATTCGAGCAAG--TGTTTGGAGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
.........................................A-------AATTCGAGCAAG--TGTTTGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................AT--------------------------------------ATGCCCC----------ATAT-------------------------------------------------------------TTGTCGT...........2011.00100000010000
...............................AAGTAGCAAAA-------AATTCGAGCAAG--T.................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
......................................AAAA-------AATTCGAGCAAG--TGTTTGGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
....................................GCAAAA-------AATTCGAGCAAG--T.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.....................AAATTGTAAAAAGTAGCAAAA-------AATTCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
.................................................AATTCGAGCAAG--TGTTTGGAGAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
........................................AA-------AATTCGAGCAAG--TGTTTGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..................................................ATTCGAGCAAG--TGTTTGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...............AAAAAAAAATTGTAAAAAGTAGCAAAA-------................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.................................................AATTCGAGCAAG--TGTTTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
........................................................GCAAG--TGTTTGGAGAAGTAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100100000000
droEug1
----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AA-TCGAGCAAG--TGTTTG-AAAAGTAAGTACGG-TGCAA---AGAAA----------------ATGGAA-T--------------------------TA--G-AGG--AATGGT-GAACAAGA--GGGCGCGACGCG-AGACAA-AGCGAATG-GGTA-ATTTT-----CCCAGCAAGACTTTTCTTGCTTGTCGTCACTGCCCGTGTCT-----------------------------TAAAGATGGCGGC-CCAA-AGCGTGA-ACTTATTCGCAGA-A-TCGCGG-GCA--------------------------------------AGGGTCT----------CA---------------------------------------------------------------TGTTTGTAAATTTTTGCGSizeHit CountTotal NormTotal
No Reads
droBia1
----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGC--G--TGTTTG-CAAAGTAAGTACCA-TGGCG---GACGAGC--------------GTGGAA-C--------------------------GA--G-------CGAGA-GAGTGAGA--GGGGGCGACGCG-TGACAA-GGCGAGTG-GGGAAATTTT-----CCCAGCGAACTTCGTCTTGTTTCGCCTCGCCCGCC---TCT-----------------------------CAAAGATGGCGTC-ATAG-AACGCCA-ACCTATTCCCATA-A-TCGCGG-GCA--------------------------------------AGGCTCC----------AA---------------------------------------------------------------CGATTGTGAATTTTCGCGSizeHit CountTotal NormTotal
No Reads
droTak1
----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGTTTG-AAAAGTAAGTAGAG-TGAG----AGTGC----------------CTGGGG-C--------------------------TG--C-CAG--CGGAGC-GAGCGAGA--GGGCGCGACGCG-AGACAA-AGCGAATG-GGGAAATTTT---TCCCCAGCGAAACTCGCCTCGTTTCGGCTGCCCCCCC---GTT-----------------------------CAAAGATGGCGCC-TAGG-AGCGCCA-AGTTATCCGCTGA-A-CGGCGG-GCC--------------------------------------ATTGCCC----------AG---------------------------------------------------------------CAATCGCATATTTTCGCGSizeHit CountTotal NormTotal
No Reads
droEle1
----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------TATTCGAGCAAG--TGTTTG-AAAAGTAAGTAGAG-TGCAG----GGGA----------------CTGGAA-G--------------------------TG--G-TGC--AGGAGA-GAGCAAGA--GGGCGCGACGCG-AGACAA-AGCGATTG-GGGA-ATTTT-----GCCAGCGCA-TTTGTCGCGTTTGCAGTCGCCCTTT---TGG-----------------------------CCAAGATGGCGAC-TGGA-AACGTGA-ACTTTTTCGCATT-A-TC------------------------------------------------------------------------------------------------------------------------------------CGCAT-TAGTCGAGSizeHit CountTotal NormTotal
No Reads
droRho1
----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AA-TCGAGCAAG--TGTTTG-AAAAGTAAGTAGAG-TGCAG----GGGA----------------CTGGAA-T--------------------------TT--G-CGG--AGGAGA-GAGCGAGA--GGGCGCGACGCG-AGACAA-AGCGAATG-TAAAAATTTT------TTAGTTCAATTCGTAGCGCTTGCAGACGCCCTTT---TGG-----------------------------CCAAAATGGCGAC-TGGA-AACGTGA-ACTTTTTTGTAGA-A-TC------------------------------------------------------------------------------------------------------------------------------------TGCATATTTTCGCGSizeHit CountTotal NormTotal
No Reads
droFic1
----------GAAACAAAA-AAAATTGTAAAAAGTAGCAAAA--------ATTCGAGCAAG--TGTGTG-AAAAGTAAGTAAAG-TGCCA---AACAA----------------CTA-AA-T--------------------------TG--G-TTC--ATGGGT-GAGCAAGA--GGGCGCGACGCA-AGACAA-AGCGAACG-GGGACATTTT-----CCCTGCGGAATGTGTCGCGTTTGTGGTCGACAGTC---GTT-----------------------------TAAAAATGGCGGC-TGGA-AACGTGGATTTATTATCCCGGAG-TCCTGG-ACA--------------------------------------GGGGTCT----------AG---------------------------------------------------------------A--GAGAATATTTTTGCGSizeHit CountTotal NormTotal
No Reads
droKik1
----------GCAACAAA--AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGTTTG-AAAAGTAAGTACAT-CGTGTGG-AGTG-------------------------------------------------------TCT-----GCAGCAGAGCG-GG--GGGAGCGACGCG-AGACAAGAGCGATTG-TGGA-ATTTT-----TCTCGCGAATTTCGTCTCGTTTGACGGTGTCATCA---G-GCC-----------------------------AAGATGGCGTCGTAAA-AGCTTAA-ACTTTTTCGCAGA-A-TCGCGA-GGA--------------------------------------AAGATCC----------AT---------------------------------------------------------------CGATTGTGTATTTTCGCTSizeHit CountTotal NormTotal
No Reads
droAna3
----------TCAACAAA--AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGTTTG-A-AAGTAAGTACAA-AGAACGAA--CAAGCGCTGCTCTGCTGTA-TGTA--AGAGCGAGAGGTTCCGGGGCTTGGGGCGGCCGAC--GAGGCAGT-TGGGGAAA----GCCAAAAGCGTAGACAA-AGCAAATGAGTGTAATTTT-----TCCTGCGAAATGGGT-T-----------GACGTTA---A-ATC-----------------------------AAAATGGCGGC-GTGC-TAGGCCAGGATTGTGCGAA-A-AAGC-TG------------------------------------------------CT----------AT---------------------------------------------------------------TTTGCGTACAATTTCGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................AAA-------AATTCGAGCAAG--TGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................2012.002110000
............................AAAAAGTAGCAAAA-------AATTCGAGCAAG--T.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
...........................TAAAAAGTAGCAAAA-------AATTCGAGCAAG--T.................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
.....................................................................................................................................................................................................................................ATGGGT-T-----------GACGTTA---A-ATC-----------------------------.............................................................................................................................................................................................1811.001010000
....................................................TCGAGCAAG--TGTTTG-A-AAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
..................................................ATTCGAGCAAG--TGTTTG-A-AAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..............................................................................................................................................TGGGGCGGCCGAC--GAGGCAGT-...........................................................................................................................................................................................................................................................................................................................2111.001000001
.............................AAAAGTAGCAAAA-------AATTCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...................................AGCAAAA-------AATTCGAGCAAG--..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
................................AGTAGCAAAA-------AATTCGAGCAAG--TGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.........................................A-------AATTCGAGCAAG--TGTTTG-A-.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
...............................AAGTAGCAAAA-------AATTCGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..............................................................................................................................................................................................................................CTGCGAAATGGGT-T-----------GACG.....................................................................................................................................................................................................................................1811.001001000
..................................................ATTCGAGCAAG--TGTTTG-A-AA.......................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.................................GTAGCAAAA-------AATTCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
........................................AA-------AATTCGAGCAAG--TGTTT.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
............................................................................................................................GCGAGAGGTTCCGGGGCTTGGG...............................................................................................................................................................................................................................................................................................................................................2211.001000010
.................................GTAGCAAAA-------AATTCGAGCAAG--C.................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droBip1
----------GCAACAAA--AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGTTTG-A-AAGTAAGTACAT-TAAACGAA--CGCCCG-----------TATTGTGC-G-------TGGTGCAGGGGCTTGG-GCAGCGGCG--GCGGCAGT-TGGGGAAA----GC-CAAAGCGTAGACAA-AGCAAATG-TGCA-ATTTT-----TTCTGCGAA-TTTGGTT-----------GACGTTT---A-GAC-----------------------------AAAATGGCGGC-GAAATGATGTAG-GATTCTGCGAA-A-A-GC-TGCTGCT--------------------------------------AACCCACA---------A-----------------------------------------------------------------TATTGCAGAA-TTCGTGSizeHit CountTotal NormTotal
No Reads
dp5
----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGTTTA-A-GCGTAAGTAGGA-GAAATGAA--G-------------------------------------------------------------A------C-GACGGAAA--ACGGGCGAAGCAGGGGCAC-AGAGAATG-CGGA-ATTTT------CTTGTGAAATGTGGCTCGATGAACGTCGACGTCG---A-CGC-----------------------------AAGATGGCGATGTGAA-AACGTGA-TTTTTGGCTCTGA-A-AAGCAT-GAAAGGGCCCAGCCCC-----------------------------------------------------------------------------------------------------------------------GTGGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................AATTCGAGCAAG--TGTTTA-A-GC.......................................................................................................................................................................................................................................................................................................................................................................................................................21114.00140610304000
..................................................ATTCGAGCAAG--TGTTTA-A-GC.......................................................................................................................................................................................................................................................................................................................................................................................................................20112.00120720003000
.......................................AAA-------AATTCGAGCAAG--TGTTTA-A-GC.......................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020100001000
.........................................A-------AATTCGAGCAAG--TGTTTA-A-GC.......................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000200000
..................................................ATTCGAGCAAG--TGTTTA-A-GCGTAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000
............AACAAAA-AAAATTGTAAAAAGTAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
....................................................................................................................................................................................................................................................................................................AAGATGGCGATGTGAA-CT..........................................................................................................................................................................1811.0010000000100
.................................................................................................................................................................................................................................................................................................................GAA-AACGTGA-TTTTTGGCTCT.........................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................TCGATGAACGTCGACGTCG---A-C............................................................................................................................................................................................................................2111.0010100000000
......................AATTGTAAAAAGTAGCAAAA-------AATTCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010010000000
.................................................................................................................................................................................................................................................................................................................................................AT-GAAAGGGCCCAGCCCC-----------------------------------------------------------------------------------------------------------------------GTGG..2211.0010100000000
......................................AAAA-------AATTCGAGCAAG--TGT...............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
........................................AA-------AATTCGAGCAAG--TGTTTA-A-GC.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
...................................................TTCGAGCAAG--TGTTTA-A-GC.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............................................................................................................................................................................................................................................CGATGAACGTCGACGTCG---A-C............................................................................................................................................................................................................................2011.0010100000000
..............................AAAGTAGCAAAA-------AATTCGAGCAAG--T.................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000
.....................................................................................................................................................................................................................TT------CTTGTGAAATGTGGCTCGA.................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................TAAGTAGGA-GAAATGAA--G-------------------------------------------------------------A------C-G..........................................................................................................................................................................................................................................................................................................................2111.0010000000010
........................................................................................................................................................................................................................................................................................................................................GA-A-AAGCAT-GAAAGGGCCCA..................................................................................................................................2011.0010100000000
.................................................AATTCGAGCAAG--TGTTTA-A-GCGTA....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.......................................................................................................................................................................................................................................GTGGCTCGATGAACGTCGACG.....................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................CTCGATGAACGTCGACGTCG---A-.............................................................................................................................................................................................................................2111.0010100000000
droPer2
----------GTAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGTTTA-A-GCGTAAGTAGGA-GAAATGAA--G-------------------------------------------------------------A------C-GACGGAAA--ACGGGTGAAGCAGGGGCAC-AGAGAATG-CGGA-ATTTT------CTTGTGAAATGTGGCTCGATGAACGTCGACGTCG---A-CGC-----------------------------AAGATGGCGATGTGAA-AACGTGA-TTTTTGGCTCTGA-A-AAGCAT-GAAAGGGCCCAGCCCC-----------------------------------------------------------------------------------------------------------------------GTGGTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................ATTCGAGCAAG--TGTTTA-A-GC.......................................................................................................................................................................................................................................................................................................................................................................................................................2015.005200003
.................................................AATTCGAGCAAG--TGTTTA-A-GC.......................................................................................................................................................................................................................................................................................................................................................................................................................2115.005004001
.................................GTAGCAAAA-------AATTCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
.......................................AAA-------AATTCGAGCAAG--TGT...............................................................................................................................................................................................................................................................................................................................................................................................................................1812.002010001
...................................................TTCGAGCAAG--TGTTTA-A-GC.......................................................................................................................................................................................................................................................................................................................................................................................................................1912.002011000
......................................................................................................................................................................................................................................................................................................................ACGTGA-TTTTTGGCTCTGA-A-A...................................................................................................................................................2112.002200000
...............................................................................................G-------------------------------------------------------------A------C-GACGGAAA--ACGGGTGA.........................................................................................................................................................................................................................................................................................................1911.001001000
.........................TGTAAAAAGTAGCAAAA-------AATTCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.......................ATTGTAAAAAGTAGCAAAA-------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.................................................AATTCGAGCAAG--TGTTTA-A-GCGTAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
........................TTGTAAAAAGTAGCAAAA-------AATT............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...............................................................................................G-------------------------------------------------------------A------C-GACGGAAA--ACGGGTGAA........................................................................................................................................................................................................................................................................................................2011.001000001
.....................................................CGAGCAAG--TGTTTA-A-GCGTA....................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
....................................................................A-A-GCGTAAGTAGGA-GAAATGA.....................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
........................................AA-------AATTCGAGCAAG--TGTTTA-A-GC.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
............................................................................................................................................................................................................................................................................................................GATGTGAA-AACGTGA-TTTTTGGCTC..........................................................................................................................................................2511.001100000
..............................................................................................................................................................................................................................................................................................................TGTGAA-AACGTGA-TTTTTGGC............................................................................................................................................................2111.001001000
....................AAAATTGTAAAAAGTAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
droWil2
-----------TAACAAAA-AAAATTGTAAAAAGTAGCAAAAATATAAAATTTCGAGCAAGTGTGTTGA-AACCGTAAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................ATAAAATTTCGAGCAAGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2017.00700250
..........................................ATATAAAATTTCGAGCAAGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2217.00700070
.........................................AATATAAAATTTCGAGCAAGTGTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2614.00400040
..........................................ATATAAAATTTCGAGCAAGTGTGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................2614.00400040
.........................................AATATAAAATTTCGAGCAAGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2314.00400130
.........................................AATATAAAATTTCGAGCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00300120
..........................................ATATAAAATTTCGAGCAAGTGTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300210
............................................ATAAAATTTCGAGCAAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300120
..................A-AAAATTGTAAAAAGTAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00301020
.....................................................CGAGCAAGTGTGTTGA-AACCGTA....................................................................................................................................................................................................................................................................................................................................................................................................................2313.00301110
..........................................ATATAAAATTTCGAGCAAGTGTGTTGA-...........................................................................................................................................................................................................................................................................................................................................................................................................................2712.00201010
.........................................AATATAAAATTTCGAGCAAGTGTGTTGA-...........................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200200
..........................................ATATAAAATTTCGAGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
......................................................GAGCAAGTGTGTTGA-AACC.......................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
..............................................AAAATTTCGAGCAAGTGTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200020
.................................................ATTTCGAGCAAGTGTGTTGA-...........................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
..........................................ATATAAAATTTCGAGCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200110
............................................ATAAAATTTCGAGCAAGTGTGTTGA-...........................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200020
..........................................ATATAAAATTTCGAGCAAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200110
................................AGTAGCAAAAATATAAAATTTCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
...................................................TTCGAGCAAGTGTGTTGA-AACC.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
...................................................TTCGAGCAAGTGTGTTGA-AG.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
........................................AAATATAAAATTTCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
........................................AAATATAAAATTTCGAGCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
..............................................AAAATTTCGAGCAAGTGTGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...........................................TATAAAATTTCGAGCAAGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
......................................AAAAATATAAAATTTCGAGCAAGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
.............................................TAAAATTTCGAGCAAGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.......................................AAAATATAAAATTTCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.................................................ATTTCGAGCAAGTGTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...........................................TATAAAATTTCGAGCAAGTGTGTTGA-...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
........................TTGTAAAAAGTAGCAAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
........................................AAATATAAAATTTCGAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.........................................AATATAAAATTTCGAGCAAGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
............................................ATAAAATTTCGAGCAAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...............AAAA-AAAATTGTAAAAAGTAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.......................................................AGCAAGTGTGTTGA-AACCG......................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
....................AAAATTGTAAAAAGTAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
...........................................TATAAAATTTCGAGCAAGTGTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
...................................AGCAAAAATATAAAATTTCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..............................................AAAATTTCGAGCAAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
............................................ATAAAATTTCGAGCAAGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
........................................................GCAAGTGTGTTGA-AACCGTA....................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
................................................AATTTCGAGCAAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001
...................................................TTCGAGCAAGTGTGTTGA-AACCGTA....................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
..................................................TTTCGAGCAAGTGTGTTGA-...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.................................................ATTTCGAGCAAGTGTGTTG.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
....................AAAATTGTAAAAAGTAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...............................................AAATTTCGAGCAAGTGTGTTGA-...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.........................................................CAAGTGTGTTGA-AACCGTA....................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
......................................................GAGCAAGTGTGTTGA-AACCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.........................................AATATAAAATTTCGAGCAAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.........................................AATATAAAATTTCGAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.........................................AATATAAAATTTCGAGCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...............................................AAATTTCGAGCAAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
................................................AATTTCGAGCAAGTGTGTTGA-...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
......................................AAAAATATAAAATTTCGAGCAAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.........................................AATATAAAATTTCGAGCAAGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.......................ATTGTAAAAAGTAGCAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.............................................TAAAATTTCGAGCAAGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..........................................................AAGTGTGTTGA-AACCGTAGA..................................................................................................................................................................................................................................................................................................................................................................................................................2020.50101000
..........................................................AAGTGTGTTGA-AACCGTAGAC.................................................................................................................................................................................................................................................................................................................................................................................................................2150.20100010
droVir3
AATATAAAAAGCAACCAAA-AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGCTGA-AAACGTAAGTACGATTGCAA---ATACA---------------------------------------------------------------------------AAA-C-GA-----CG-ATACGA-AGCAAATT-CG-AAATTTT------CTTGTGAAATGTGATTCGTGTG----------CC---A-CGCAAGATGGCGACGTAAGCTGCTGTCGTTCAAAAAGAGCGCA-------------GTAAATTGA-AAAG-A-AAACGA-ACAAAGACCCAGCCCATTGTCTGACTTGCAT-------------------------------------------------------------------------------------------------GTTAAA-TTCTGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................AATTCGAGCAAG--TGCTGA-AAACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................2413.003000000000000000100000100000000000000000000000000000000000001000
.............................AAAAGTAGCAAAA-------AATTCGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000000001000000000000000000000000000000000000000000100
..................................................ATTCGAGCAAG--TGCTGA-AAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002000000000000000000000000000000000000000000000000000000000
..................................................ATTCGAGCAAG--TGCTGA-AAACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000002
.......................ATTGTAAAAAGTAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000001000000000000000000001000000000000000000000000000
..................................................ATTCGAGCAAG--TGCTGA-AA.........................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000001100000000000000000000000000000000000000000000
.........................TGTAAAAAGTAGCAAAA-------AATTCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002001100000000000000000000000000000000000000000000000000000000000
.................................................AATTCGAGCAAG--TGCTGA-A..........................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000001100000000000000000000000000000000000000000000
...............................AAGTAGCAAAA-------AATTCGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000000000001000000000000000000000000100
...............................AAGTAGCAAAA-------AATTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000010000000000000000000000000000000000000000
.................................GTAGCAAAA-------AATTCGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000001
....................AAAATTGTAAAAAGTAGCAAAA-------................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
.........................................A-------AATTCGAGCAAG--TGCTGA-...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
...................................AGCAAAA-------AATTCGAGCAAG--T.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000100000000000000000000000000000000000000000000000000
......................................AAAA-------AATTCGAGCAAG--TGC...............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000010000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TAAGCTGCTGTCGTTCAA............................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
.ATATAAAAAGCAACCAAA-AAAATTGTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
............................AAAAAGTAGCAAAA-------AATTCGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000010000000000000000000000000000000000000000000
..........GCAACCAAA-AAAATTGTAAAAAGTAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
........................................AA-------AATTCGAGCAAG--TGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
..................................................ATTCGAGCAAG--TGCTGA-AAACGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000100000000000000000000000000
........................................AA-------AATTCGAGCAAG--TGCTGA-AAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................TTCGTGTG----------CC---A-CGCAAGATGG...................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
.........................................A-------AATTCGAGCAAG--TGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000001000000000000000000000000000000000000000000
...............................AAGTAGCAAAA-------AATTCGAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
..................................................ATTCGAGCAAG--TGCTGA-AAACGAG....................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
.........................................A-------AATTCGAGCAAG--TGCTGA-AAACG......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CTGCTGTCGTTCAAAAAGAG......................................................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TGCTGTCGTTCAAAAAGAGCGC...................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
......................................AAAA-------AATTCGAGCAAG--TGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.................................GTAGCAAAA-------AATTCGAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
.......................................AAA-------AATTCGAGCAAG--TGCTGA-...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.........................................A-------AATTCGAGCAAG--TGCTGA-A..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000001000000000000000000000000000000000000000
....................AAAATTGTAAAAAGTAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000001000000000000000000000000000000
................AAA-AAAATTGTAAAAAGTAGCAAAA-------................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CTGCTGTCGTTCAAAAAGAGC.....................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
.............................AAAAGTAGCAAAA-------AATTCGAGCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000001000000000000000000000000000
..................................................ATTCGAGCAAG--TGCTGA-A..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000100000000000000000000000000
.....................AAATTGTAAAAAGTAGCAAAA-------AATTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000100000000000000000000000000000000000000000
...................................................TTCGAGCAAG--TGCTGA-AAACGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
..............CCAAA-AAAATTGTAAAAAGTAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
................AAA-AAAATTGTAAAAAGTAGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000001000000000000000000000000000
.......................ATTGTAAAAAGTAGCAAAA-------AATTCGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000100
.........................TGTAAAAAGTAGCAAAA-------AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
............AACCAAA-AAAATTGTAAAAAGTAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000001000000000000000000000000000000000000000000000
...................................................TTCGAGCAAG--TGCTGA-AAACGAG....................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
............AACCAAA-AAAATTGTAAAAAGTAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
.................................................AATTCGAGCAAG--TGCTGA-AAACGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................GCTGTCGTTCAAAAAGAGCGC...................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
......................................AAAA-------AATTCGAGCAAG--TGCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
...ATAAAAAGCAACCAAA-AAAATTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.......................................AAA-------AATTCGAGCAAG--TGCTGA-AAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000001000000000000000000000000000000
.........................................A-------AATTCGAGCAAG--TGCTGA-AAACGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
.....................................................CGAGCAAG--TGCTGA-AAACGAG....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
.........................................A-------AATTCGAGCAAG--TGCTGA-AAACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....................................GCAAAA-------AATTCGAGCAAG--TGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000010000000000000000000000000000000000000000000000000
..............................AAAGTAGCAAAA-------AATTCGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
......................................................GAGCAAG--TGCTGA-AAACGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................2150.201000000000000000000000000000000000000000000000000000000000001000
.......................................................AGCAAG--TGCTGA-AAACGAG....................................................................................................................................................................................................................................................................................................................................................................................................................1970.141000000000000000001000000000000000000000000000000000000000000000
droMoj3
----------GCAACAAAA-AAAATTGTAAAAAGTAGCAAAA-------AATTCGAGCAAG--TGCTGA-AAACGTAAGTACAAAT-----------------------------------------------------------------------A------C-TACTGCAAAA-TTCCCA------ATGCAA-AGCAAAAT-TA-AAATTTT------CTTGTGAAATGTGATTCGTGTG----------CC---A-CGCAAGATGGCGACGTAAGC---TGTCGTCCAAACAGAGCGCA-------------GTAAATTGCTAAAG-A-AAACGA-ACAAAGACCCAGCCCACTGTATGATTTGCATATTGAGTTG---ACTATAAAAGATGATAT---------------------------------------------------------------ATTTA------ATATGAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................A-------AATTCGAGCAAG--TGCTGA-AAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
............................AAAAAGTAGCAAAA-------AATTCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
..............................AAAGTAGCAAAA-------AATTCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................TTTT------CTTGTGAAATGTGATTCGTGTG----------CC---...............................................................................................................................................................................................................................2811.001000010
.......................................AAA-------AATTCGAGCAAG--TGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..................................................ATTCGAGCAAG--TGCTGA-AAACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.....................................CAAAA-------AATTCGAGCAAG--T.................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.......................ATTGTAAAAAGTAGCAAAA-------AATTCGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..........................GTAAAAAGTAGCAAAA-------AATT............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............................................................................................................................................................................................................................................................CC---A-CGCAAGATGGCGACGTAAGC---TGTC..................................................................................................................................................................................................2711.001100000
droGri2
----------GTAAG----------------------------------------------------------------TACGATC-----------------------------------------------------------------------G------C-AACAGC-------GAAGACATG-AGACAA-AGAG---A-CG-AAATTTT------CTTGTGAAATGTAATTCGTGTG----------CC---A-CGCAAGATGGCGACGTAAGC---TATCGTCAAAAAAGAGCACA-------------GTAAATCGCCAAAG-A-AATCGA-ACAAAGACCCAGCCCACTGTATGATTTGTAAATTGTATTGTGTACTTT----------ATATTACTATGAGATTTTCTATGCAAATTACCGTAAATTAGTTCTTATGCTGCGGGCTAGACATATGCATGTATGTGTATGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................................................................ATGTAATTCGTGTG----------CC---A-CGCA.........................................................................................................................................................................................................................2111.00110

Generated: 05/19/2015 at 04:53 AM