ID:

dsi_22589

 Coordinate:

3l:11422528-11422677 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.2 -39.2 -39.2

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCCTTTGTGAAAATCTCCCGCGAGGAGGGGCTGAGGGCCCTCTATTCCGGGTAAGAATCTGTGGGGGTTCTCCGGTTGGCACGTTGTCAAAACATGGTACCATCATGCCATTCTTATCGCGCCAAACGTGACGGTCACGTGTTCGTCCGCCGGGGAGCATAATGAGTGCACGGACAGTAGAACCTCTATATGGTGAACTAATGAGCTATTCTAAAAGTCGATAAGAATTATACTTAATAACACATCTTAG
********************************************************.((((((...((((((((((.((.(((.......((((((..(((.(((((...................))))).)))..)))))))))))))))))))))..........))))))............**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 M023
head
 M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.....................................................................................................................................................................GTGCACGGACAGTAGAACCTC................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................................................................................................CGGACAGTAGAACCTCTATAT........................................................... 21 0 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................................................GCACGGACAGTAGAACCTCTA.............................................................. 21 0 1 1.00 1 0 1 0 0 0 0
...........................................................................................................................................................................................................AGCTATTCTAAAAGTCGATAA.......................... 21 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................................................................TGAGTGCACGGAGAGTAGAACC.................................................................. 22 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................................ATGAGTGCACGGACAGTAGAA.................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
........................................................ATCTGTGGGGGTTCTCCGGTT............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.....TGTGAAAATCTCCCGCGAGGAGGGGC........................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0
.......................................CTCTATTCCGGGTAAGAATCT.............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................ATCTGAAGGTCACGTGTTCG......................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 1
..............CCCCCGCGAGGGGGGTCT.......................................................................................................................................................................................................................... 18 3 19 0.16 3 0 0 0 0 2 1
..............................CTGCGAGACCTCTATTCCG......................................................................................................................................................................................................... 19 3 8 0.13 1 0 0 1 0 0 0
...................................................................................................CTATCATGCCATTCTGA...................................................................................................................................... 17 2 8 0.13 1 0 0 0 0 1 0
..................................................................................................................................AAGGTCACGTGTTCG......................................................................................................... 15 1 9 0.11 1 0 0 0 0 1 0
.............................................................................................................................................................................................................CTATGCTGAGAGTCGATA........................... 18 3 20 0.10 2 0 0 0 0 2 0
................CCCGCGAGGGGGGTCT.......................................................................................................................................................................................................................... 16 2 12 0.08 1 0 0 0 0 0 1
..............................................................................................................................................................................CAGTAGGACCTCTTTAT........................................................... 17 2 12 0.08 1 0 0 0 0 0 1

Anti-sense strand reads

CGGAAACACTTTTAGAGGGCGCTCCTCCCCGACTCCCGGGAGATAAGGCCCATTCTTAGACACCCCCAAGAGGCCAACCGTGCAACAGTTTTGTACCATGGTAGTACGGTAAGAATAGCGCGGTTTGCACTGCCAGTGCACAAGCAGGCGGCCCCTCGTATTACTCACGTGCCTGTCATCTTGGAGATATACCACTTGATTACTCGATAAGATTTTCAGCTATTCTTAATATGAATTATTGTGTAGAATC
****************************************************************.((((((...((((((((((.((.(((.......((((((..(((.(((((...................))))).)))..)))))))))))))))))))))..........))))))............******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
.................................................................................................................................CTGCCAGTGCACAAGCAGGC..................................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0
............................................................................................................................................................................................................CGATAAGATTTTCAGCTAT........................... 19 0 1 2.00 2 2 0 0 0 0 0
......................................................................................................................CGGGGTTTGCACTGCCA................................................................................................................... 17 1 1 2.00 2 0 2 0 0 0 0
...........................................................................................................................................................................................................TCGATAAGATTTTCAGCTATT.......................... 21 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................TGCACTGCCAGTGCACAAGCA........................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................TAAGATTTTCAGCTATTCTT....................... 20 0 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................................GGAGATATACCACTTGATTAC............................................... 21 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................TACGGTAAGAATAGCGCGGT.............................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0
...........................................................................................................................................................................................................TCGATAAGATTTTCAGCTAT........................... 20 0 1 1.00 1 1 0 0 0 0 0
...................................................................................................GGTAGTACGGTAAGAATAGCG.................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0
................................................................................................CATGGTAGTACGTTGAGCAT...................................................................................................................................... 20 3 3 0.33 1 0 1 0 0 0 0
..............................................................................................................................................................................................................AGAAGATTTTCGGCTTTTCTT....................... 21 3 3 0.33 1 0 0 0 0 1 0
........................................................................................................................................................................CAGCCTGACATCTTGGAGA............................................................... 19 3 6 0.17 1 0 0 1 0 0 0
..........................................................................................................................................................................GCCTGACATCTTTGAGA............................................................... 17 2 8 0.13 1 0 0 1 0 0 0
..........................................................................................................................................................................GCCTGACATCTTGGACA............................................................... 17 2 10 0.10 1 0 0 1 0 0 0
.................................................................................................................AGTAACGCGGTTTGCAC........................................................................................................................ 17 2 10 0.10 1 0 0 0 0 0 1
..........................................................................................................................................................................GCCTGACATCTTGAAGA............................................................... 17 2 12 0.08 1 0 0 1 0 0 0
.........................................................................................................ACAGGAAGATTAGCGCGGT.............................................................................................................................. 19 3 19 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 06:54 AM