ID:

dsi_22566

 Coordinate:

2l:9659950-9660206 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.1 -26.1 -26.0

Flybase annnotation

exon [2l_9660207_9660303_-]; CDS [2l_9660207_9660303_-]; exon [2l_9659619_9659949_-]; CDS [2l_9659619_9659949_-]; intron [2l_9659950_9660206_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACATCTTTGGATCGGATGTGGGAGACACCAACCTGGCTTCCCTGCTTCAGGTGAGTGACCTATTTAAAAGCCCAATGGATCTGCCAATAAGTTATTTCTATAAGTAAAGAGCTAATATGTAAATTTAAAATGATTTCTCATACCATCCTAATCATAAAACCAAAAACAGTCGTAATTTCGTTTAATGCTGAGTTTTTATCGTGCTCTATTTTTTTCCCTCCCAAATTTGCAAACACAACAAATGAAACCAAAGTGAAAGTTTCCAAAAACCAATTCAAATATGTATGTATTTGTTATCGCCCACCAGAATTTCCTCATCTGCATCGAAATGTTTATCGCGGCCGTGGCTCACATCTA
**************************************************(((.((((.................(((.....)))....((((.((((........)))).)))).(((((((((...((((((..............))))))...........((((..(((......)))..))))(((.........))).................))))))))).....((((((((....((...((((.((((....))))...))))....))....)))))))).)))).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 O001
Testis
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
.................................................................................................................................................................................................................................................................................................................................CATTGAAATGTTTATCGCGGC............... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....TTTGGATCGGATGTGGGAGACAC......................................................................................................................................................................................................................................................................................................................................... 23 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................TGTTTATCGCGGCCGTGGCTCACATC.. 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................AAATGTTTATCGCGGCCGTT........... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................TACCATCCCAATCTTAAAACA.................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.....TTTGGATCGGATGTGGGAGAC........................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........ATCGGATGAGGGAGAC........................................................................................................................................................................................................................................................................................................................................... 16 1 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................ATCGAAATGTTTATCGCGGCC.............. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
...TCTTTGGATCGGATGTGGGAGACACC........................................................................................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................................TGTTTATCGCGGCCGTGGCT........ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....TTTGGATCGGATGTGGGAGACACCAAC..................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................TCATACCATCCTAATCATAAA....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........GATCGGATGTGGGAGACA.......................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................TTTCCTCATCTGCATTGAAATG.......................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................TGTTTATCGCGGCCGTGGCTCAC..... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................AAAGTGAAAGTCGCCAAAAAC....................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........GATCGGATGTGGGAGACACC........................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................AAATGTTTATCGCGGCCGTGGCTC....... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................ATCCGTTATCGCCCACCA................................................... 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AGCAAACACAAGAACTGAAACC............................................................................................................ 22 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................................................................................TTTATCGTGACCGTGGCT........ 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................AAGCCAAGAACAGTCGAAATT.................................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
.........GATCGGATGTGGAAG............................................................................................................................................................................................................................................................................................................................................. 15 1 13 0.15 2 0 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................AAAGTGAAAGTATCAAAA.......................................................................................... 18 2 20 0.10 2 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AATGCTGATTTTATATCGGG.......................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................AAGTGAAAGTCGCCAAAAACT...................................................................................... 21 3 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................TGTCATCGCCCACCA................................................... 15 1 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0
.......TAGATCGGATGTGGAAG............................................................................................................................................................................................................................................................................................................................................. 17 2 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TTCGTTATCGCTCATCAGA................................................. 19 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TCTGGTATCGCCCACCA................................................... 17 2 19 0.05 1 0 0 0 0 0 0 0 0 1 0 0
......TTAGATCGGATGTGGA............................................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0
..........................ATGAACCTGGCTTCCC........................................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
.................................................TGTGAGTGAGCTAGTTAAAA................................................................................................................................................................................................................................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0
.....................................................................GCCCTATGGAGCTGCC................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TGTAGAAACCTAGCCTACACCCTCTGTGGTTGGACCGAAGGGACGAAGTCCACTCACTGGATAAATTTTCGGGTTACCTAGACGGTTATTCAATAAAGATATTCATTTCTCGATTATACATTTAAATTTTACTAAAGAGTATGGTAGGATTAGTATTTTGGTTTTTGTCAGCATTAAAGCAAATTACGACTCAAAAATAGCACGAGATAAAAAAAGGGAGGGTTTAAACGTTTGTGTTGTTTACTTTGGTTTCACTTTCAAAGGTTTTTGGTTAAGTTTATACATACATAAACAATAGCGGGTGGTCTTAAAGGAGTAGACGTAGCTTTACAAATAGCGCCGGCACCGAGTGTAGAT
**************************************************(((.((((.................(((.....)))....((((.((((........)))).)))).(((((((((...((((((..............))))))...........((((..(((......)))..))))(((.........))).................))))))))).....((((((((....((...((((.((((....))))...))))....))....)))))))).)))).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
............................................................................................................................................ATGGTAGGGTTAGAATTTTGT.................................................................................................................................................................................................... 21 3 1 17.00 17 11 0 5 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................GGTGGTCTCAAAGGA.......................................... 15 1 15 9.27 139 0 95 0 5 30 0 0 9 0
...........................................................................................................................................AATGGTAGGGTTAGAATTTTG..................................................................................................................................................................................................... 21 3 2 5.50 11 5 0 1 5 0 0 0 0 0
...........................................................................................................................................TATGGTAGGGTTAGAATTTTGT.................................................................................................................................................................................................... 22 3 1 5.00 5 5 0 0 0 0 0 0 0 0
............................................................................................................................................ATGGTAGGGTTAGAATTTTG..................................................................................................................................................................................................... 20 2 1 4.00 4 4 0 0 0 0 0 0 0 0
...............................................................................................................................................................GGTTTTTGTCAGCATTAAAGC................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................................................GTTTACTTTGGTTTCACTTTC.................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
..........TGGCCTGCACCCTCTGTG......................................................................................................................................................................................................................................................................................................................................... 18 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................TGGTAGGGTTAGAATTTTGT.................................................................................................................................................................................................... 20 3 7 0.57 4 3 0 1 0 0 0 0 0 0
.............................................................................................................................................TGGTAGGGTTAGAATTTTG..................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................GGTGGTCTCAAAGGAG......................................... 16 1 6 0.33 2 0 2 0 0 0 0 0 0 0
...................................................................................................................................................GGTTGGTATTTTGGTTTTTGTCT........................................................................................................................................................................................... 23 3 4 0.25 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................TTCTCTTCCAAAGGTTTGTGG...................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................AAAAAAAGGGAGCTTTTACACG............................................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................AATGGTAGGGTTAGAATTTT...................................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AGCAAATTACGACAC..................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................AAAAAATAGCAGGAGGTCTT................................................ 20 3 15 0.07 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGTATTTTGGTTCTT............................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................CGGGGGTGGTCTCAAAGGA.......................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................................................GGTGGTCTCAAAGGAGA........................................ 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0
.....................................................TCAGTGGATAAATTT................................................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................GATAAAAATAGGGAG......................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:9659900-9660256 - dsi_22566 ACATCTTTGGATCGGATGTGGGAGACACCAACCTGGCTTCCCTGCTTCAGGTGAGTGACCTATTTAAAAGCCCAA----TGGATC--TG-CCAATAAGTTATTT--------C--------------------------------------------------------------------TATAAGTAAAGAGC--------------------------------TAATATGTAAATTTAAAAT-----------GATT-TCTCATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCCTAATCA---------------------------------------TAAAACCAAAAACAGTCGTAATTTCGTTTAATGCTG---------AG--TTTTTATCGTGCTCTATTTTTTTCCCT-CCCAAATTTGCAAACAC---------------------------AACAAAT-GAAA---------------------CCAAAGTGAAAGTTTCCA-------------------------------A-AAACCAATTCAAATATGTAT-----------------------GT--------ATTTGTTATCG---CCCACCAGAATTTCCTCATCTGCATCGAAATGTTTATCGCGGCCGTGGCTCACATCTA
droSec2 scaffold_3:5408692-5409049 - ACATCTTTGGATCGGATGTGGGAGACACCAACCTGGCTTCCCTGCTTCAGGTGAGTGACCTATTAAAAAGACGAA----TGGATC--TT-CCAATAAGTTATTT--------C--------------------------------------------------------------------TATAAGTAAAGAGC--------------------------------TAATATGTAAATTTAAAAT-----------GATTTTCTCATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCCTAATCA---------------------------------------TAAAACCAAAAACAGTCGTAATTTCGTTTAATGCTG---------AG--TTTTTATCGTGCTTTACTTTTCTCCCT-CCCAAATTTGCAAACAC---------------------------AACAAAT-GAAA---------------------CCAAAGTGAAAGTTTCCA-------------------------------A-AAACCAATTCAAATATGTAT-----------------------GT--------ATTTGTTATCG---CCCACCAGAATTTCCTCATCTGCATCGAAATGTTTATCGCGGCCGTGGCTCACATCTA
dm3 chr2L:9962010-9962367 - ACATCTTTGGGTCGGATGTGGGAGACACCAATCTGGCTTCCCTGCTTCAGGTGAGTGACCTATTTAAAAGCCGAA----TGGATC--TG-GCAATAAGTTATTT--------C--------------------------------------------------------------------TATAAGTAAAGAGC--------------------------------TAATATGTAAATTAAGCAT-----------GATTTTTTCATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCTTATCT---------------------------------------TATAACCGAAAACAGTCCCAAGTTCGTTTAATACTGATGACTAAGAG--TTTTTATCAAGCATAAC-TT---------CCAAATTTGCAAACAC---------------------------AACAAAT-GAAA---------------------CCGAAGTGAAAGTTTCCA-------------------------------A-AAACCAATTCAAATATGTAT-----------------------GT--------ATTTGTTATCG---CCAACCAGAATTTCCTCATCTGCATCGAAATGTTTATCGCGGCCGTGGCTCACATCTA
droEre2 scaffold_4929:10582298-10582634 - der_1295 ACATCTTTGGATCGGATGTGGGGGACACCAACCTGGCTTCCCAGCTTCAGGTGAGTGGTTTATTTAAAAGCTGAT----AAAAAC--TGACCAATAATGTATAT--------G--------------------------------------------------------------------CATAAGTAAAATACCAAATTATGTTTT------TTAAA---------AATATTTAAACTGAAAAC-----------AAATTACTGATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCGGATCC---------------------------------------TAGAATCG------GTTTAAAAGACTTTTAAAGC-----------------------------TATTTTTCTCCCT-GTCAAAATCGGCAATAC-------------------------------------------------------------AAAAGTGAAAGTTTCCA-------------------------------A----CCATTTAAAAAATGTAT-----------------------AT--------TTTTGTTATCG---CCCACCAGAACTTCCTTATCTGCATTGAAATGTTTATAGCAGCCGTGGCTCACATCTA
droYak3 2L:12652638-12653021 - ACATCTTTGGATCGGATGCGGGAGACACCAACCTGGCTTCCCTCCTGCAGGTGAGTGGTGTATTTAAAACATTCA----AAAAAC----------------TTT--------T--------------------------------------------------------------------CATAAGTCAAAAACCAGACCATGTTTTGACCATTTAAATATTAATATAATATTTAAATTGAAAAG-----------GAGTTACTTATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGGGATGC---------------------------------------TAAAATCGGAAACAGTCCAATGGACGCTTAAACCTACCGACTAAAAG--TTTTTATCAAGCTTTAC-TTTCTCTCT-TTCAAAATGGCCAATAC---------------------------AA-AAAT-GAAA---------------------CCAAAGTGAAAGTTGCCA-------------------------------A-AAATTAATTAAAAAATGTAT-----------------------AT--------CTTTGCTATCG---CACACCAGAACTTCCTCATCTGCATCGAAATGTTTATCGCAGCTGTGGCTCACATCTA
droEug1 scf7180000409554:4949807-4950195 + ACATTTTTGGGTCGGATGTTGGTGACACTAATCTCGCATCCCTGCTGCAGGTGAGTGAAAT-------------------TGATC------------------------------------------------------------------------------------------------TTAAAGATACGGGT--------------------------------TAATATGAAAAATAAGGTTAATACCTTTGGGGTTTTTACATATTCCGAACTGAAATATTTAAACTGTCAATGTCTTAGGATTTTATTATATTTAGATTTATGAATGTTCATTCGAATAAGTAA----------------GGTTAACAAAA-----------------------------------------------------------ATTAACCT---------------------------------------TATGACTGAGAACAGT---------ATTTA-AAGTGATGACTAAGAG--TGCTTCACCAGCCTTAC-TTTCTATTA-TTCAAATTACCA-----------------------------------------------------------------------------TTTTCG-------------------------------G-AATTCAATTTAAATAAC-------------------------------------GTTATGATTG---TCCACCAGAACTTTCTCATCTGTATCGAGATGTTCATCGCTGCTGTAGCTCACATCTA
droBia1 scf7180000301468:64447-64792 - ACATTTTCGGCTCGGATGTGGGGGACACGAACCTGGCATCACTTCTGCAGGTGAGTGATTTGTTCAG---CTTATATCATCGAAATAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAATACTTTTTC---------------------TTCC---TATGTAAGGCATATATAACTTACGATTAAGATAA------------ATT--------TAGCTGACCA--CT---------------------------------------------------------------------------------------AGGGGTTGATTATAGCTCATGACTAAGCCCATGATTACAAAACCACAC-TTTCTCTTT-TGTAAAGAA---------------------GAATATGCAAGACA-G-CCTT-GCGA---------------------ATTAGGTGAAAGTTGCTG-------------------------------A-AAACCAATTACAATAAT-------------------------------------CTCATATTCG---CCCTCTAGAACTTCCTCATCTGCATCGAGATGTTCATCGCCGCCGTGGCCCACATCTA
droTak1 scf7180000415667:549784-549912 + C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATGCAAAACC---------------------------ATCTA---GCAT---------------------CTTAAGTGAAGGTTTTGA-------------------------------ACAAAACAATTAAAATAAT-------------------------------------TTAACATTCG---CCCTCTAGAACTTCCTCATCTGCATCGAGATGTTCATCGCGGCCGTGGCGCACATCTA
droEle1 scf7180000491186:3016767-3017177 - ACATTTTTGGATCGGATGTGGGCGACACGAACCTGGCATCTCTGCTTCAGGTGAGTCCATT-------------------------------AGTATTTAAATTAAATTTAACGGGAAGGCTTAAAATAAAAGAATAGCTTGATTAAATAAATTGC------------------------------------------------------------------------------------------------------------------------------------------TATCCC-------------------------------------------------------------------------------------GTTAAATTATCTAAATCTCTGACCG--ATTTGTGT-------------T---------------------------------------------------------TAAAAAGTGCCTTAAGCAATTATAGCTGATGACTAAGAG--CGGATCTTGAGAGCTAC-TTTCTCTTAATCCAA-TC-TTTTAGAAAACATATTGAGTAATATATGCAAAACA-A-AAAT--AAT---------------------TTCAAGAGAAAGTTCATC-------------------------------G-AGACTT----------GTGTGACATTTATATATGATATGATATTTATTTGATACCCTGCAAT-C---CCTGCCAGAACTTCCTCATCTGCATTGAGATGTTCATCGCCGCCGTGGCCCACATCTA
droRho1 scf7180000779234:230876-231305 + ACATTTTTGGATCGGATGTGGGCGACACTAATCTGGCATCCCTACTTCAGGTGAGACCACA--CTAAGAA-TTAT----TGAATC--TA-TTAGTATTTAAATT--------CGTGAA---------AAAAAGAGAAGTTGAATTAGATAACTTCCATTATCTCAAAAAGGGAAACCGTTCGTAAAGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAACGAAGCGCTGATTTGTTT-------------TAACTTAATCT---------------------------------------TGGGATTGTAAAAAAT---------GCCTAAAGCTGATGACGAAGAG--TGGATCTTCAGTGCTAC-TTTCTCTTA-TCCAAATTCTCAAAGAAAAGATATTGAACCAAATATGCAAAATA-A-ATATACCAT---------------------TTCAAGAGAAAGTTAATC-------------------------------G-A------CCTGAATGTG----AC--------------TGATATTTACGTTGTTCTTTATAAT-C---CTTACCAGAACTTCCTTATCTGCATCGAGATGTTCATCGCCGCCGTGGCCCATATCTA
droFic1 scf7180000453838:164057-164491 - ACATTTTTGGCTCGGATGTGGGCGACACAAATCTGGCTTCATTGTTGCAGGTGAGTTAATG--TTAA------------TCGAT-----------------------------------------------------------------------------TCCTAAATGGAAAACTCGTGGTAG--------------------------------------------------------------------------TC-----------------------TTTAAA----------CTTATGTTTTTGCTATATATTTATTTAAA-----------------------------------------------GATTAAAACGATAACCTAGCTAAAACCCAAACCCAAA-TTGTTTAATAGTTATTCAGTAACTTCCTCTTCAGAAACTTATGGCTTAAAGCGGTTTGATATTTTATATTAAAATCAGAGACAGTACCTTGACTAACTAAAGCTGATGACTGAAAG--TGATTCTTAAGCCAAAC-TTTCTCTTT-ATAAA-ATTGCCAATAC---------------------------C-------GATC---------------------AAAAAGTGAAAGTTTCTC-------------------------------C-ATATTAATTTAAATAAC-------------------------------------CTATTAACCC---CCTCACAGAACTTCCTTATCTGCATTGAGATGTTCATCGCGGCGGTGGCCCATATCTA
droKik1 scf7180000302677:162101-162189 + A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGAAAGTTTCTA-------------------------------A------------------------------------------------------CTTTGTAATCGCCATTTGCCAGAACTTCCTCATTTGCATCGAGATGTTCATCGCCGCCGTGGCTCATATCTA
droAna3 scaffold_12916:13801324-13801653 - ACATATTTGGATCGGATGTAGGAGACACAAATTTGGCATCGCTGCTACAGGTCAGTCTAAA-------------------A-----------AGTATTTAAAATAAA------------------------------GC--------------------------------------------------------------------------------------------ATGTAAACGAA----------------------------------------------GATTTGTAACTCTTTAAATACCTTTTT---------------------TGAC---T---------------------------------------------------------TTAACA--------------------------------------------------------------------------------------------CCAATGCGCGAA---------------------------TAAAACAAAAC-TTTCTCTTT-GCCAAGTTGCCAAAAAT---------------------------AA-ACAT-GC--TCTTGAAAATAACATACATGTATAAAGTGAAAGTGGCCTTTAAAAGGGTGACCACTGTCTTAATATTTATT-AAACTAA------------------------------------------------TTCTTATCT---CTTATCAGAACTTTCTCATCTGCATCGAGATGTTTATTGCTGCCGTGGCGCACATCTA
droBip1 scf7180000396535:765179-765463 - ATATTTTTGGATCTGATGTGGGCGACACAAACTTGGCATCGCTTCTGCAGGTTAGTTTCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGTTTAACCCTTTATGACCCTGTTT---------------------T--------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------ACGACCGCGAC--TACGTTATCGCGAAAAC-TTTCTCTTT-ACCAAGTTGCCAAAAAT---------------------------AA-ACAT-GC--TCTTGAAAAAGCCAG--ATGTGAAAAGTGAAAGTTGCCTTTAAAAGTGTG----------TAAAAATTCTA-ATATTAA------------------------------------------------AATTAATCT---CTTCACAGAATTTTCTCATCTGCATCGAAATGTTTATTGCTGCCGTGGCGCACATCTA
dp5 4_group3:208235-208296 + ACCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCCAGAACTTTCTCATTTGCATTGAGATGTTTATCGCTGCCGTAGCTCACATCTA
droPer2 scaffold_1:1683004-1683065 + ACCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCCAGAACTTTCTCATTTGCATTGAGATGTTTATCGCTGCCGTAGCTCACATCTA
droWil2 scf2_1100000004521:12268324-12268392 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCTTATTG---TTT-GTAGAACTTTCTCATTTGCATTGAGATGTTTATAGCTGCTGTGGCACATATCTA
droVir3 scaffold_12723:3982832-3982928 + GCATCTTTGG---CGATGTCGGTGATGCAAATCTAGCGTCCATGCTGCAAGTAAGTCTTTGATTGCATATCTGA-----TCGGGT--TT-CTATGAAGTTATTT--------C--------------------------------------------------------------------TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:14744671-14744723 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAACTTTCTCATTTGTATAGAAATGTTTATTGCGGCTGTGGCGCATATTTA
droGri2 scaffold_15252:3674799-3674850 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAACTTTCTCATATGCATTGAGATGTTTATTGCGGCTATTGCCCACATTTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACATCTTTGGATCGGATGTGGGAGACACCAACCTGGCTTCCCTGCTTCAGGTGAGTGACCTATTTAAAAGCCCAA----TGGATC--TG-CCAATAAGTTATTT--------C--------------------------------------------------------------------TATAAGTAAAGAGC--------------------------------TAATATGTAAATTTAAAAT-----------GATT-TCTCATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCCTAATCA---------------------------------------TAAAACCAAAAACAGTCGTAATTTCGTTTAATGCTG---------AG--TTTTTATCGTGCTCTATTTTTTTCCCT-CCCAAATTTGCAAACAC---------------------------AACAAAT-GAAA---------------------CCAAAGTGAAAGTTTCCA-------------------------------A-AAACCAATTCAAATATGTAT-----------------------GT--------ATTTGTTATCG---CCCACCAGAATTTCCTCATCTGCATCGAAATGTTTATCGCGGCCGTGGCTCACATCTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....TTTGGATCGGATGTGGGAGACAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00202000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTATCGCGGCCGTGGCTCACATC..2612.00200000002000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTTATCGCGGCCGTT...........2012.00200000000000002000
.....TTTGGATCGGATGTGGGAGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAAATGTTTATCGCGGCC..............2111.00101000000000000000
...TCTTTGGATCGGATGTGGGAGACACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTATCGCGGCCGTGGCT........2011.00100001000000000000
.....TTTGGATCGGATGTGGGAGACACCAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000010000000
........................................................................................................................................................................................................................................................................TCATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCCTAATCA---------------------------------------TAAA......................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
.........GATCGGATGTGGGAGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTATCGCGGCCGTGGCTCAC.....2311.00110000000000000000
.........GATCGGATGTGGGAGACACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTTATCGCGGCCGTGGCTC.......2411.00110000000000000000
droSec2
ACATCTTTGGATCGGATGTGGGAGACACCAACCTGGCTTCCCTGCTTCAGGTGAGTGACCTATTAAAAAGACGAA----TGGATC--TT-CCAATAAGTTATTT--------C--------------------------------------------------------------------TATAAGTAAAGAGC--------------------------------TAATATGTAAATTTAAAAT-----------GATTTTCTCATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CATCCTAATCA---------------------------------------TAAAACCAAAAACAGTCGTAATTTCGTTTAATGCTG---------AG--TTTTTATCGTGCTTTACTTTTCTCCCT-CCCAAATTTGCAAACAC---------------------------AACAAAT-GAAA---------------------CCAAAGTGAAAGTTTCCA-------------------------------A-AAACCAATTCAAATATGTAT-----------------------GT--------ATTTGTTATCG---CCCACCAGAATTTCCTCATCTGCATCGAAATGTTTATCGCGGCCGTGGCTCACATCTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........GATCGGATGTGGGAGACACCAACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
...TCTTTGGATCGGATGTGGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATCGAAATGTTTATCG...................2011.0010001
......TTGGATCGGATGTGGGAGTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3311000
dm3
ACATCTTTGGGTCGGATGTGGGAGACACCAATCTGGCTTCCCTGCTTCAGGTGAGTGACCTATTTAAAAGCCGAA----TGGATC--TG-GCAATAAGTTATTT--------C--------------------------------------------------------------------TATAAGTAAAGAGC--------------------------------TAATATGTAAATTAAGCAT-----------GATTTTTTCATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCTTATCT---------------------------------------TATAACCGAAAACAGTCCCAAGTTCGTTTAATACTGATGACTAAGAG--TTTTTATCAAGCATAAC-TT---------CCAAATTTGCAAACAC---------------------------AACAAAT-GAAA---------------------CCGAAGTGAAAGTTTCCA-------------------------------A-AAACCAATTCAAATATGTAT-----------------------GT--------ATTTGTTATCG---CCAACCAGAATTTCCTCATCTGCATCGAAATGTTTATCGCGGCCGTGGCTCACATCTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.CATCTTTGGGTCGGATGTGGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000305000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ATGTGGGAGACACCAATCTGGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ATGTGGGAGACACCAATCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000200000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTGCATCGAAATGTTTATCG...................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCATCGAAATGTTTATCGCGGC...............2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
ACATCTTTGGGTCGGATGTGGGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACATCTTTGGGTCGGATGTGGGAGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCGGCCGTGGCTCACATC..2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACTGATGACTAAGAG--TTT......................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATCGCGGCCGTGGCTCACATC..2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
ACATCTTTGGGTCGGATGTGGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATTTCCTCATCTGCATCGA..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTATCGCGGCCGTGGCTCACATC..2611.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGCCGTGGCTCACATCTG2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GGGTCGGATGTGGGAGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CATCTTTGGGTCGGATGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCCTCATCTGCATCGAAAT...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCTGCATCGAAATGTTTATCGCGGC...............2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCATCTGCATCGAAAT...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTTATCGCGGCCGTGGC.........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..................................................GTGAGTGACCTATTTAAAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCATCGAAATGTTTATCGCG.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCGGCCGTGGCTCACATCT.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAATGTTTATCGCGGCCG.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTGCATCGAAATGTTTATCG...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.CATCTTTGGGTCGGATGTGGGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATCGAAATGTTTATCGCG.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCATCTGCATCGAAATGTT........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAATGTTTATCGCGGCCGTGG..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTATCGCGGCCGT............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCATCGAAATGTTTATCGC..................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATCTGCATCGAAATGTT........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTATCGCGGCCGTGGC.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........TCGGATGTGGGAGACACCAATCTGGCTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTATCGCGGCCGTGGCT........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CATCTTTGGGTCGGATGTGGGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................C-------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCTTATCT---------------------------------------TATAACCGA.................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGGCCGTGGCTCACATCT.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTTATCGCGGCCGTGT..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGAAATGTTTATCGCGGC...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCGAAATGTTTATCGCGG................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTAT-----------------------GT--------ATTTGTTATCG---..........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTTTATCGCGGCCGTGG..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
................TGTGGGAGACACCAATCTGGCTTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACATCTTTGGGTCGGATGTGGGAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCGGATGTGGGAGACACCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCGGCCGTGGCTCACA....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAAAACAGTCCCAAG....................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCGGCCGTGGCTCACAT...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCAATTCAAATATGTAA-----------------------..................................................................................2030.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CATCTTTGGGTCGGATGTGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAAAACAGTCCCAAGAGG.................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
droEre2
ACATCTTTGGATCGGATGTGGGGGACACCAACCTGGCTTCCCAGCTTCAGGTGAGTGGTTTATTTAAAAGCTGAT----AAAAAC--TGACCAATAATGTATAT--------G--------------------------------------------------------------------CATAAGTAAAATACCAAATTATGTTTT------TTAAA---------AATATTTAAACTGAAAAC-----------AAATTACTGATAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCGGATCC---------------------------------------TAGAATCG------GTTTAAAAGACTTTTAAAGC-----------------------------TATTTTTCTCCCT-GTCAAAATCGGCAATAC-------------------------------------------------------------AAAAGTGAAAGTTTCCA-------------------------------A----CCATTTAAAAAATGTAT-----------------------AT--------TTTTGTTATCG---CCCACCAGAACTTCCTTATCTGCATTGAAATGTTTATAGCAGCCGTGGCTCACATCTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGAAATGTTTATAGCAGCCGT............2511.0010000100
............................................................................................................................................................................................................................................................................AC-------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACCGGATCC---------------------------------------TAGAATC...................................................................................................................................................................................................................................................................................................................................2011.0011000000
droYak3
ACATCTTTGGATCGGATGCGGGAGACACCAACCTGGCTTCCCTCCTGCAGGTGAGTGGTGTATTTAAAACATTCA----AAAAAC----------------TTT--------T--------------------------------------------------------------------CATAAGTCAAAAACCAGACCATGTTTTGACCATTTAAATATTAATATAATATTTAAATTGAAAAG-----------GAGTTACTTATAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------TAACGGGATGC---------------------------------------TAAAATCGGAAACAGTCCAATGGACGCTTAAACCTACCGACTAAAAG--TTTTTATCAAGCTTTAC-TTTCTCTCT-TTCAAAATGGCCAATAC---------------------------AA-AAAT-GAAA---------------------CCAAAGTGAAAGTTGCCA-------------------------------A-AAATTAATTAAAAAATGTAT-----------------------AT--------CTTTGCTATCG---CACACCAGAACTTCCTCATCTGCATCGAAATGTTTATCGCAGCTGTGGCTCACATCTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
ACATTTTTGGGTCGGATGTTGGTGACACTAATCTCGCATCCCTGCTGCAGGTGAGTGAAAT-------------------TGATC------------------------------------------------------------------------------------------------TTAAAGATACGGGT--------------------------------TAATATGAAAAATAAGGTTAATACCTTTGGGGTTTTTACATATTCCGAACTGAAATATTTAAACTGTCAATGTCTTAGGATTTTATTATATTTAGATTTATGAATGTTCATTCGAATAAGTAA----------------GGTTAACAAAA-----------------------------------------------------------ATTAACCT---------------------------------------TATGACTGAGAACAGT---------ATTTA-AAGTGATGACTAAGAG--TGCTTCACCAGCCTTAC-TTTCTATTA-TTCAAATTACCA-----------------------------------------------------------------------------TTTTCG-------------------------------G-AATTCAATTTAAATAAC-------------------------------------GTTATGATTG---TCCACCAGAACTTTCTCATCTGTATCGAGATGTTCATCGCTGCTGTAGCTCACATCTASizeHit CountTotal NormTotal
No Reads
droBia1
ACATTTTCGGCTCGGATGTGGGGGACACGAACCTGGCATCACTTCTGCAGGTGAGTGATTTGTTCAG---CTTATATCATCGAAATAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAATACTTTTTC---------------------TTCC---TATGTAAGGCATATATAACTTACGATTAAGATAA------------ATT--------TAGCTGACCA--CT---------------------------------------------------------------------------------------AGGGGTTGATTATAGCTCATGACTAAGCCCATGATTACAAAACCACAC-TTTCTCTTT-TGTAAAGAA---------------------GAATATGCAAGACA-G-CCTT-GCGA---------------------ATTAGGTGAAAGTTGCTG-------------------------------A-AAACCAATTACAATAAT-------------------------------------CTCATATTCG---CCCTCTAGAACTTCCTCATCTGCATCGAGATGTTCATCGCCGCCGTGGCCCACATCTASizeHit CountTotal NormTotal
No Reads
droTak1
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATGCAAAACC---------------------------ATCTA---GCAT---------------------CTTAAGTGAAGGTTTTGA-------------------------------ACAAAACAATTAAAATAAT-------------------------------------TTAACATTCG---CCCTCTAGAACTTCCTCATCTGCATCGAGATGTTCATCGCGGCCGTGGCGCACATCTASizeHit CountTotal NormTotal
No Reads
droEle1
ACATTTTTGGATCGGATGTGGGCGACACGAACCTGGCATCTCTGCTTCAGGTGAGTCCATT-------------------------------AGTATTTAAATTAAATTTAACGGGAAGGCTTAAAATAAAAGAATAGCTTGATTAAATAAATTGC------------------------------------------------------------------------------------------------------------------------------------------TATCCC-------------------------------------------------------------------------------------GTTAAATTATCTAAATCTCTGACCG--ATTTGTGT-------------T---------------------------------------------------------TAAAAAGTGCCTTAAGCAATTATAGCTGATGACTAAGAG--CGGATCTTGAGAGCTAC-TTTCTCTTAATCCAA-TC-TTTTAGAAAACATATTGAGTAATATATGCAAAACA-A-AAAT--AAT---------------------TTCAAGAGAAAGTTCATC-------------------------------G-AGACTT----------GTGTGACATTTATATATGATATGATATTTATTTGATACCCTGCAAT-C---CCTGCCAGAACTTCCTCATCTGCATTGAGATGTTCATCGCCGCCGTGGCCCACATCTASizeHit CountTotal NormTotal
No Reads
droRho1
ACATTTTTGGATCGGATGTGGGCGACACTAATCTGGCATCCCTACTTCAGGTGAGACCACA--CTAAGAA-TTAT----TGAATC--TA-TTAGTATTTAAATT--------CGTGAA---------AAAAAGAGAAGTTGAATTAGATAACTTCCATTATCTCAAAAAGGGAAACCGTTCGTAAAGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAACGAAGCGCTGATTTGTTT-------------TAACTTAATCT---------------------------------------TGGGATTGTAAAAAAT---------GCCTAAAGCTGATGACGAAGAG--TGGATCTTCAGTGCTAC-TTTCTCTTA-TCCAAATTCTCAAAGAAAAGATATTGAACCAAATATGCAAAATA-A-ATATACCAT---------------------TTCAAGAGAAAGTTAATC-------------------------------G-A------CCTGAATGTG----AC--------------TGATATTTACGTTGTTCTTTATAAT-C---CTTACCAGAACTTCCTTATCTGCATCGAGATGTTCATCGCCGCCGTGGCCCATATCTASizeHit CountTotal NormTotal
No Reads
droFic1
ACATTTTTGGCTCGGATGTGGGCGACACAAATCTGGCTTCATTGTTGCAGGTGAGTTAATG--TTAA------------TCGAT-----------------------------------------------------------------------------TCCTAAATGGAAAACTCGTGGTAG--------------------------------------------------------------------------TC-----------------------TTTAAA----------CTTATGTTTTTGCTATATATTTATTTAAA-----------------------------------------------GATTAAAACGATAACCTAGCTAAAACCCAAACCCAAA-TTGTTTAATAGTTATTCAGTAACTTCCTCTTCAGAAACTTATGGCTTAAAGCGGTTTGATATTTTATATTAAAATCAGAGACAGTACCTTGACTAACTAAAGCTGATGACTGAAAG--TGATTCTTAAGCCAAAC-TTTCTCTTT-ATAAA-ATTGCCAATAC---------------------------C-------GATC---------------------AAAAAGTGAAAGTTTCTC-------------------------------C-ATATTAATTTAAATAAC-------------------------------------CTATTAACCC---CCTCACAGAACTTCCTTATCTGCATTGAGATGTTCATCGCGGCGGTGGCCCATATCTASizeHit CountTotal NormTotal
No Reads
droKik1
A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTGAAAGTTTCTA-------------------------------A------------------------------------------------------CTTTGTAATCGCCATTTGCCAGAACTTCCTCATTTGCATCGAGATGTTCATCGCCGCCGTGGCTCATATCTASizeHit CountTotal NormTotal
No Reads
droAna3
ACATATTTGGATCGGATGTAGGAGACACAAATTTGGCATCGCTGCTACAGGTCAGTCTAAA-------------------A-----------AGTATTTAAAATAAA------------------------------GC--------------------------------------------------------------------------------------------ATGTAAACGAA----------------------------------------------GATTTGTAACTCTTTAAATACCTTTTT---------------------TGAC---T---------------------------------------------------------TTAACA--------------------------------------------------------------------------------------------CCAATGCGCGAA---------------------------TAAAACAAAAC-TTTCTCTTT-GCCAAGTTGCCAAAAAT---------------------------AA-ACAT-GC--TCTTGAAAATAACATACATGTATAAAGTGAAAGTGGCCTTTAAAAGGGTGACCACTGTCTTAATATTTATT-AAACTAA------------------------------------------------TTCTTATCT---CTTATCAGAACTTTCTCATCTGCATCGAGATGTTTATTGCTGCCGTGGCGCACATCTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGAGATGTTTATTGCTGC...............2111.001100000
....ATTTGGATCGGATGTAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
......................AGACACAAATTTGGCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..................TAGGAGACACAAATTTGGCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droBip1
ATATTTTTGGATCTGATGTGGGCGACACAAACTTGGCATCGCTTCTGCAGGTTAGTTTCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGTTTAACCCTTTATGACCCTGTTT---------------------T--------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------ACGACCGCGAC--TACGTTATCGCGAAAAC-TTTCTCTTT-ACCAAGTTGCCAAAAAT---------------------------AA-ACAT-GC--TCTTGAAAAAGCCAG--ATGTGAAAAGTGAAAGTTGCCTTTAAAAGTGTG----------TAAAAATTCTA-ATATTAA------------------------------------------------AATTAATCT---CTTCACAGAATTTTCTCATCTGCATCGAAATGTTTATTGCTGCCGTGGCGCACATCTASizeHit CountTotal NormTotal
No Reads
dp5
ACCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCCAGAACTTTCTCATTTGCATTGAGATGTTTATCGCTGCCGTAGCTCACATCTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATCGCTGCCGTAGCTCACA....2311.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATCGCTGCCGTAGCTC.......2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTATCGCTGCCGTAGC.........2011.0010000000001
droPer2
ACCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGCCAGAACTTTCTCATTTGCATTGAGATGTTTATCGCTGCCGTAGCTCACATCTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTCTTATTG---TTT-GTAGAACTTTCTCATTTGCATTGAGATGTTTATAGCTGCTGTGGCACATATCTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATGTTTATAGCTGCTGTGGCACA......2720.50100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTATAGCTGCTGTGGCAT.......2220.50100100
droVir3
GCATCTTTGG---CGATGTCGGTGATGCAAATCTAGCGTCCATGCTGCAAGTAAGTCTTTGATTGCATATCTGA-----TCGGGT--TT-CTATGAAGTTATTT--------C--------------------------------------------------------------------TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................CGGTGATGCAAATCTAGCGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000001000000000000000000000000000000010
..................TCGGTGATGCAAATCTAGCGTCCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000100000000000000000000000000000000
.....................GTGATGCAAATCTAGCGTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000001000000000000000000000000000000000000000000000000000000
...................CGGTGATGCAAATCTAGCGTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
..........................................................TTGATTGCATATCTGA-----TCGGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
............................................................GATTGCATATCTGA-----TCGGGT--TT-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
.........................TGCAAATCTAGCGTCCATGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000001000000000000000000000000000000000000000000
....CTTTGG---CGATGTCGGTGATGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
...........................CAAATCTAGCGTCCATGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
droMoj3
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGAACTTTCTCATTTGTATAGAAATGTTTATTGCGGCTGTGGCGCATATTTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAACTTTCTCATATGCATTGAGATGTTTATTGCGGCTATTGCCCACATTTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:11 PM