ID:

dsi_22559

 Coordinate:

3r:2521512-2521796 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3r_2521797_2522591_+]; CDS [3r_2521797_2522099_+]; exon [3r_2521132_2521511_+]; CDS [3r_2521132_2521511_+]; intron [3r_2521512_2521796_+]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCAGCAGTCGCAGCAGCAGCAGGCGCAGCAGACTCCTGTGATGAATGAGGTGAGTGGAGCGTGCTGAAAGTCAACAGGAACAGGCACTTAAGGGCCGTCTACTGCCCAGAATCGGCACTCTTGCGAGTGCATTTATTGATAATGAACAGTGGAATGAAAAGTCTGTATTTAGCCTAGAACGCGGTGCTAAAACAAGTTAACATTTAAATATTATCAATTAAAATATGATTACAAGAATCAATTTAAGAAATGAATGCCTCTGCTATTGGGAAATATAGATAATGGTCCAAATGATCGCCATTTTAATCGATTTCCTCTACATCCCTCGTTTCAGTGCATTCGTTCTGACAGTTTGGAGAGTATCGGTGACGTCAGCTCGTCCCT
**************************************************.((((.((((.(((((((.......(((.....(((........))).....))).......))))))).)).(((((.((((((((((((((((.......(((((.......(((.((((((((.......)).)))))))))......)))))...)))))))).(((((...(((((.....))))).)))))...))))))))))).))....(((((((......((((((..........)))))).......)))))))......))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
..........................................................................................................................................................................................................................................................................................................................................................TGACAGTTTGGAGAGTATCGGTGA............... 24 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GTGCGTTCGTTCAGAGAGTTT.............................. 21 3 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................CTAGAACGCGGTGATA................................................................................................................................................................................................... 16 1 2 0.50 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................CTAGAACGCGGTGAT.................................................................................................................................................................................................... 15 1 2 0.50 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................ATCCTAGAACGCGGT....................................................................................................................................................................................................... 15 1 2 0.50 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................CCAGATGAGCGCCATTTTA............................................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................ATGCTAGAACGCGGTG...................................................................................................................................................................................................... 16 2 15 0.27 4 0 0 0 2 2 0 0 0
..................................TTCTGTGATGAATGAGGG............................................................................................................................................................................................................................................................................................................................................. 18 2 4 0.25 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................GCTAGAACGCGGTGAT.................................................................................................................................................................................................... 16 2 20 0.20 4 0 0 0 4 0 0 0 0
.......................................................................................................................................................................ATCCAGGCTAGAACGCGGT....................................................................................................................................................................................................... 19 3 6 0.17 1 0 0 0 0 0 0 1 0
..............................................................................................................................................................................CTAGAACGCGGTGATT................................................................................................................................................................................................... 16 2 19 0.16 3 0 1 0 1 1 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................TGCTGACGGTTTGGATAGTAT..................... 21 3 7 0.14 1 0 0 0 0 0 1 0 0
..................................TCTTGTGATGAATGA................................................................................................................................................................................................................................................................................................................................................ 15 1 18 0.11 2 0 0 0 0 2 0 0 0
.............................................................................................................................................................................................................TAACTATTATCAATTAA................................................................................................................................................................... 17 1 9 0.11 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................ACATCTCTCGTTTCCGT................................................. 17 2 10 0.10 1 1 0 0 0 0 0 0 0
...............................................................................................................................................TGAACTGTTGAATGAATAGT.............................................................................................................................................................................................................................. 20 3 12 0.08 1 0 1 0 0 0 0 0 0
...........CAGCAGCAGCAGGCGCAGCA.................................................................................................................................................................................................................................................................................................................................................................. 20 0 13 0.08 1 0 0 0 0 0 1 0 0
...................GCAGGCGCAGCAGACA.............................................................................................................................................................................................................................................................................................................................................................. 16 1 15 0.07 1 1 0 0 0 0 0 0 0
..............................................................TGCTGAACGTCAAGAGG.................................................................................................................................................................................................................................................................................................................. 17 2 16 0.06 1 0 0 0 1 0 0 0 0
............................................................................................................................................TATTGAACTGTTGAATGAAAA................................................................................................................................................................................................................................ 21 3 17 0.06 1 0 0 0 0 1 0 0 0
....................................................GAGTGGAGCGTGCTGTTCG.......................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0
..............................................................................................GCCGTAGACTGTCCAGAA................................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 1 0 0 0 0
................................................................................................................................................TGACAGTGGAATGAAAA................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 1
......................................................................................................................................................TGGAATGGAAAGTCT............................................................................................................................................................................................................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................CTATGCTAGAACGCGGTG...................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0
........................................TATGGAAGAGGTGAGTGGA...................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

TCGTCGTCAGCGTCGTCGTCGTCCGCGTCGTCTGAGGACACTACTTACTCCACTCACCTCGCACGACTTTCAGTTGTCCTTGTCCGTGAATTCCCGGCAGATGACGGGTCTTAGCCGTGAGAACGCTCACGTAAATAACTATTACTTGTCACCTTACTTTTCAGACATAAATCGGATCTTGCGCCACGATTTTGTTCAATTGTAAATTTATAATAGTTAATTTTATACTAATGTTCTTAGTTAAATTCTTTACTTACGGAGACGATAACCCTTTATATCTATTACCAGGTTTACTAGCGGTAAAATTAGCTAAAGGAGATGTAGGGAGCAAAGTCACGTAAGCAAGACTGTCAAACCTCTCATAGCCACTGCAGTCGAGCAGGGA
**************************************************.((((.((((.(((((((.......(((.....(((........))).....))).......))))))).)).(((((.((((((((((((((((.......(((((.......(((.((((((((.......)).)))))))))......)))))...)))))))).(((((...(((((.....))))).)))))...))))))))))).))....(((((((......((((((..........)))))).......)))))))......))))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
...................................................................................................................................................................................................................................................................................................................CGCTAGAGGAGATGTAGGTA.......................................................... 20 3 9 4.78 43 22 18 1 0 0 1 0 0 1 0
.................................................................................................................................................................................................................................................................................................................TTCGCTAGAGGAGATGTAGGTA.......................................................... 22 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................ACATAAATCGGAACCTGC........................................................................................................................................................................................................... 18 2 3 1.33 4 0 0 3 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................CGATAACCCTTTATATCTATTA..................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................AGCTAGAGGAGATGTAGGTA.......................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................GCTAGAGGAGATGTAGGTA.......................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................CCGGCTGATGTCGGGTCCTA................................................................................................................................................................................................................................................................................ 20 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0
......................................................................................TGGATTCCCGGCAGATGTTG....................................................................................................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................GACATAAATCGGAACCTGC........................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................AAATGGGATCTTGCG.......................................................................................................................................................................................................... 15 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................................TTGCTAGAGGAGATGTAGGTA.......................................................... 21 3 4 0.50 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................GCTAGAGGAGATGTAGGT........................................................... 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................TTGTTCAATTGTAAA................................................................................................................................................................................... 15 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0
................................TGATGACGCTACTTAGTCCA............................................................................................................................................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................................................................................................TCGCTAGAGGAGATGTAGGTA.......................................................... 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................ACATAAATCGGAACCTG............................................................................................................................................................................................................ 17 2 16 0.13 2 0 0 2 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................CGCTAGAGGAGATGTAGGT........................................................... 19 3 20 0.10 2 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTACTTTGCAGACAT......................................................................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 0 0 1 0 0
................................TGAGGCCACTACATGCTCC.............................................................................................................................................................................................................................................................................................................................................. 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................................................................AGTGACGCAAGCAAGAC..................................... 17 2 18 0.06 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................ATCAAGACGGTCAAACC............................ 17 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
..GTCGTCAGCGTCGTCGTCG............................................................................................................................................................................................................................................................................................................................................................................ 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................................................................................CGATGTAGGGGCCAAAGT................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:2521462-2521846 + dsi_22559 AGCAGCAGTCGCAGCAGCAGC------AG------------------G------CGCAG------CAGACTCCTGTGATGAATGAGGTGAGTGGAGCGTGCTGAAAGTCA---ACAGGAACAGGCACTTAAGGG-CCGTCT---------------------------------------ACTGCCCAGA-------------------ATCGGCACTCTTGCGAGTGCA---------------------TTTATTGATA---------------ATGAACAGT-----------------------------GGAAT---------G-----------------------------------------------------------------------------------------------------------------------------------------AAAAGTCTGT------ATTTAGCCTAGAACGCGGTGCTAAAACAAGTTAACATTTAAATATTATCAATT-------------------AAA-AT-----ATGATTACAAGAATCAATTTAAGAAATGAATGCCTCTGC----------------------------------TA-------TTGGGA-----AATATAGATAAT-------------------GGT-------------CCAAATGATCGCCATTTTA-ATC-------------------------------------------------------GATTTC--CTCTA-CATCCCTCGTTTCAGTGCATTCGTTCTGACAGTTTGGAGAGTATCGGTGACGTCAGCTCGTCCCT--------------------------------
droSec2 scaffold_6:2718086-2718470 + AGCAGCAGTCGCAGCAGCAGC------AG------------------G------CGCAG------CAGACTCCGGTTATGAATGAGGTGAGTGGAGCGTGCTGAAAGTCA---ACAGGAACAGGCACTTAAGGG-CCGTCT---------------------------------------ACTGCCCAGA-------------------ATCGGCACTCTTGCGAGTGCA---------------------TTTATTGATA---------------ATGAACAGT-----------------------------GGAAT---------G-----------------------------------------------------------------------------------------------------------------------------------------AAAAGTCTGT------ATTTAGCCTAGAACGCGGTGCTAAAACAAGTTAACATTTAAATATTATCAATT-------------------AAA-AT-----ATGAATACGAGAATCAATTTAAAAAATGAATGCCTTTGC----------------------------------TA-------TTGGGA-----AATATAGATAAT-------------------GGT-------------CCAAATGATCGCCATTTTA-ATC-------------------------------------------------------GATTTC--CTCTA-CATCCCACGTTTCAGTGCATTCGTTCTGACAGTTTGGAGAGTATCGGTGACGTCAGCTCGTCCCT--------------------------------
dm3 chr3R:2627031-2627396 + AGCAGCAGTCGCAGCAGCAGC------AG------------------A------CGCAG------CAGACTCCGGTGATGAATGAGGTGAGTGGAGCGTGCTGAAAGTCG---ACAGGAACA-GCACTTAAGGGGCCGTCT---------------------------------------ACTCCCCAGA-------------------ATTGGCACTCTTGCGAGTGCA---------------------TTTATTGATA---------------ATGAACAGT-----------------------------GCATT---------A---AA-------------------------------------------------------------------GCGC-------------------------------------------------------------ATAAGTCTGA------ATTTAGCTTAGCAAGC----------------------------TTATCAATT-------------------AAA-ATATTGTATAAATACAAGAATCAAATTA--GAATGAATGCCCTATC----------------------------------TG-------TTGGAA-----AATATAGACCAT-------------------GTG-------------CTAAATGATCGCCATTTTA-ATC-------------------------------------------------------GATTTC--CTCTA-CATTCCTCGTTTCAGTGCATTCGTTCCGACAGTTTGGAGAGTATCGGTGACGTCAGCTCGTCCCT--------------------------------
droEre2 scaffold_4770:2872939-2873351 + AGCAGCAGTCGCAGCAGCAGC------AG------------------G------CGCAA------CAGACTCCGGTGATGAATGAGGTGAGTGGAGCGTGTTGAAAGTCA---ACAGGAACAGGCACTTAAGGG-CCGTCT---------------------------------------ACTCCCCAGA-------------------ATCGGCACTCTTGCGAGTGCA---------------------TTTATCAATA---------------ATGACCAGT-----------------------------GCATT---------A---GA-------------------------------------------------------------------GCAA-------------------------------------------------------------AAAAGTCTTG------GATTAGCTTAGTACACGGTG--AAAAACAGTTGATATTGATATATTTTTAGTT-------------------TAA-AT-----ATGAATTTAAGAATACTTTTCAAAAACTAATTCCTTAGC----------------------------------TG-------ATAGGGACATCAATACAGACAATATGCCAATTGGGGTCTTACCTT-------------CCGAATGATCATTATATTG-ATC-------------------------------------------------------GATTTC--CTCTC-CGCCTCTTGTTTCAGTGCATTCGTTCGGACAGTTTGGAGAGCATCGGTGACGTCAGCTCGTCCCT--------------------------------
droYak3 3R:7785764-7786067 - AGTCGCAGCAGCAACAGCAGC------AG------------------G------CGCAG------CAGACTCCGGTGATGAATGAGGTGAGTGGAGCGTGTTGAAAGACA---ACAGGAACAGGCACTTA-GGG-CCGTCT---------------------------------------ACTCCCCAGA-------------------TTCGGAACCCTTGCGTGTGCA---------------------TTTATTAATA---------------ATGCACAGT-----------------------------GCATT---------A---AGTCT----------------------------------------------------------------GCAA-------------------------------------------------------------ATAAGTCTTAGCTTAGATTTAGCTTAGTACACGATA--AAAAAAAGTTTATATTTATATAAGTTCATTT-------------------TAT-AT-----ATAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATCGTTTCAGTGCATTCGTTCGGACAGCTTGGAGAGCATCGGTGACGTCAGCTCGTCCCT--------------------------------
droEug1 scf7180000409886:273113-273255 - AACAGCAGTCGCAGCAG---C------AG------------------G------CGCAG------CAGACTCCGGTGATGAATGAGGTGAGTGGAGCGTGTTGAAAGTCA---ACAGGAACAGGCACTTA-GGG-CCATCT---------------------------------------CCTCCGCAGA-------------------ATTGGCCGCCTTGCGTATTCA---------------------TTTATTACAA---------------ATTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302155:2037178-2037333 - AGCAGCAGTCGCAACAGCAGC------AG------------------T------CGCAG------CAGACCCCGGTGATGAATGAGGTGAGTGGAGCGTGCTGAAAGTGG---ACAGGAACAGGCACTTA-GGA-CCATCC---------------------------------------ACTGCCC-GA-------------------ATCGGGACT-TTGCGTGCCCA---------------------TTTATTAAAT---------------GTTAATAGT-----------------------------ACATT---------G---AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415671:433960-434146 - ACTTAAATTTCTTTAT-----------------------------------------------------------------------------------------------------GAATAAATACTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAACTTAATCAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA-ATATT------------------------------AAAGCCTCTCT------------------------------GAGTTT-------ATAGC-------AAATTGTTAAC-------------------ATT-------------CCAACTGATACTTATTCCG-ATC-------------------------------------------------------AATTTC--TTCTT-TTTATCTCCTTTCAGTGCATTCGCTCGGATAGTTTGGAAAGCATCGGTGACGTCAGCTCGTCCCT--------------------------------
droEle1 scf7180000491278:1414666-1415131 + AGCAGTCGCAGCAGCAGCAGC------AG------------------C---AATCGCAG------CAGACTCCGGTGATGAATGAGGTGAGTGGAGCGTGTTGAAAGTCA---ACAGGAACCGGCACTTAAGGG-CCATAT---------------------------------------ACTCCCCAGC-------------------ATTGGCAATCCTGCGTGTTCA---------------------TTTATTAATA---------------AATAATA--------------------------------CGCT---------C---CA----------TTA-------------CA---------------------------------------ACAGGCAATTAATACTTGGTATTGCTACTATACAATAAGACTGCTGTCTGGATAAAACTGGAATGAA---TCTGT------GCATAGCATTGTTAGG----------------------------TTTTCACC-ACAAAATTTTTCACTAAATAGAAATATG------------------------------CAATTTTATTTTTAGCGTGAATTTTCCTAAAGTAAAGCCAAGAGCTT-------CTATC-------AA--------------AATTAGGTTTTTAAGTTCTGGTA--GGTAACCAGTTGATCACCATTTTG-ATC---------------------------------------------------------CTTC--TTCTC-CTTCTATCGTTGCAGTGCATTCGTTCGGATAGTTTGGAAAGTATTGGTGACGTCAGTTCGTCGCT--------------------------------
droRho1 scf7180000761907:4317-4460 - AGCAGAC---GCAGCAGCAGC------AA------------------T------CGCAG------CAGACCCCGGTGATGAATGAGGTGAGTGGAGCGCGTTGAAAGTCA---ACAGGAACTGGCACTTAAGGG-CCATCT---------------------------------------ACTCCCCAGA-------------------ATTGGCAT-CCTGCGTGTTCA---------------------T-TATTAATA---------------AATAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453835:61827-61978 + AGCAGCAGTCGCAACAGCAGC------AGTCGCAACAG---CAGCAGACGCAA------CAGCAGCAGACCCCGGTGATGAATGAGGTGAGTGGAGCGTGTTGAAAGTTA---ACAGGAGCAGGCACTTAAGAA-CCATCC---------------------------------------ACTCCTCTGA-------------------ATGGCAGTTCTTGCGTGTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302619:326078-326387 - CGCAACAAGCGCAGCAGCAGC------AA------------------A------CGCAACAACAGCAGACTCCGGTGATGAATGAGGTGAGTGCTGTGCGATGAAAGTTT---ACAGGAACAGGCACTTAAGGT-CCAGTTT--------------------------------------CTTACCAAGACTCCTTGATAGCTTAAGCGATCGACACTTTTAAGTGTTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGTTCTTAAT-----TAATATATATATACCTTAAT----------------TATATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA--CTCTTATATA------------A---------TT-ATCTCTCG--ATAGTGCATCCGTTCGGACAGCTTGGAGAGCATCGGTGACGTTAGTTCTTCGCTGGGAAATCCTCCATATATACCGGCAGCATCAG
droAna3 scaffold_13340:5437875-5438244 + dan_2908 AACAGCAGCAGCAACAACAGC------AG------------------C------AGCAA------CAGACTCCGGTGATGAATGAGGTGAGTGGAGCGTGTTGAAAGTCA---ACAGGAACAGGCACTTAAAGTG-GAGCTCCGCCTTAATATTT-TTTTCGCAGTTCGCATTTGTGCGTACTGCC-----------------------ATTGGCATTCTTGTGTGTCTAAGTGG--------------------------GGAAGATTATG-------------------------------------------------------------------------------------------------------------------GCAGCGAATAGTTCACTA-------------------------------------------------------------AAAA------------------------------------------------------------------------------------TTA-ATCTA------------------------------GAAGC----------------------------------------AGTCGTTTTATGGGAATATTAA-------------------------------------AGGGGCAGAGAAAGGGGATACCTCTTAGGTTCCTCTTCCGAAAAAATAATATTAAAATAATG------------CA---------------------TT-CTTTTATTATTTCAGTGCATCCGTTCGGATAGCTTGGAGAGCATTGGCGATGTCAGCTCGTCGCT--------------------------------
droBip1 scf7180000396708:3375891-3376183 - AACAGCAGCAACAACAGCCGC------AG------------------C------AGCAA------CAGACTCCGGTGATGAATGAGGTGAGTGGAGCGTGTTGAAAGTCA---ACAGGAAGAGGCACTTAAAGTG-GAGCTCCGCCTTAATATTTATTTTTGCATTTGGCAGTTGTGCGTTCTGCC-----------------------ATTGGCATTCTTGGGTGTCTAAGTGG--------------------------GGAAGAT-------------TAGAG---------------------------GGGAACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------ATCATTTAAAAGCATTCAT----------------AACAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAAT-----------------------------TTT-AATATATTATTTCAGTGCATCCGCTCGGATAGCTTGGAGAGCATTGGCGATGTCAGCTCCTCGCT--------------------------------
dp5 2:19762628-19763044 + AGCAGCAGACACAGTCACAGTCCCAGAACTTGCCACAGTCTCAGCAGAACCCA------CAGCAGCAGACTCCAGTGATGAATGAGGTGAGTGGATCGTGTTGAAAGTCA---ACAGAAA-AGGCACTTTAAGTG-CGGGTC------------------------------------------CTCAGACTCC---------------TTCGGGGTTTATGCGTGGC-------CTGAATCAGAATATCATTAATTGATGGGAGGATCCTGAGGCAAGATCAGCGTCTGCTACAAAAACCAACATAAAGATATGGAACCAAAGCTAGGAATATTCTGCATATCTTTCATAGATATTA-----TAGCCCAAAACTCCTAAGAT-----------------------------------------------------------------------------------------------------TTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------CACC-------AAA-----AA------------------GTATC-------------TAAAAC------CATACTT-ATA-------------------------------------------CA------------TTATCTCTCTCTCTCTCTCTATTCCAGTGCATTCGTTCCGATAGTTTGGAGAGCATTGGCGATGTGAGCTCTTCTCT--------------------------------
droPer2 scaffold_3:2510923-2511311 + AGACACAGTCACAGTCCCAGA------ACTTGCCACAGTCTCAGCAGAACCCA------CAGCAGCAGACTCCAGTGATGAATGAGGTGAGTGGATCGTGTTGAAAGTCA---ACAGAAA-AGGCACTTTAAGTG-CGGGTC---------------------------------------CTCC---GGCTCC---------------TTCGGGGTTTATGCGTGGC-------CTGAATCAGAATATCATTAATTGATGGGAGGATCCTGAGGCAAGATCAGCGTCTGCCTCAAAAACCAAGATAAAGATGTGGAACCAAAGCTAGGAATATTCTGCATATCTTTCATAGATATTATATTATAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----AA------------------GTATC-------------TAAAAC------CATACTT-ATA-------------------------------------------CA------------ATATCTCTCTCTCTCTCTCTATTCCAGTGCATTCGTTCCGATAGTTTGGAGAGCATTGGCGATGTGAGCTCTTCTCT--------------------------------
droWil2 scf2_1100000004902:11996298-11996602 + AGCAACAGCAACAGCAGCAAC------AT------------------C------AGCAACAGCAGACAACGCCCGTGATGAATGAGGTAAGTTGATTGTGTTGAAAGTGA---GGCAGAAAAAGCACTTAAATAA-AAATTG--------------------------------------------------------------------------------CATCTG--------------------------------------------------------------CTTA------------------------------------------------------------ATTA-----TTAACGAAATATCCCAAGATTATTGCAAGAGTTTTCGCACAA-------------------------------------------------------------GAAATTCTTG------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGAGAAATAATTAATTTTCATCTTA-TTC-CCCCACCT------------------AATG------------TATTCACTTTCCGTTTCA--TTCTT-CTTTCATTGATCCAGTGTATACGTTCGGATAGCTTGGAGAGCATTGGAGATGTTAGCTCATCACT--------------------------------
droVir3 scaffold_12963:10526442-10526575 - AGCAGCAGCAGCAGCAGCAGC------G----------------------------CAA------AA---GCCGGA---------------GAGAGCGTGACTGAAGCAG---CCAGGCAAACGGAAGCGCGTG-CCGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTACGGAAATATAATAACACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGTTCACGGCACATAAACGACACT--------------------------------
droMoj3 scaffold_6500:26228060-26228160 + AGCAGCAGCAGCAGCAGCAGC------AT------------------C------AGCAG------CAG----CAGCAGCAAGTGCAGCAAGTGCAACATC-----AGGCA---GCAAGAGCAGCTGCACTGGAT-TCGTCA---------------------------------------ACTGATCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14853:7263947-7264061 - AGCAGCAACAGCAGCAGCAGC------AG------------------G------CA-GA------CGAACGTCAGCAACAGTATGAGCACATGCGATATGCCCAAAGTCATGGACACGGTCTGGCACCCAATGA-C--------------------------------------------ACTACCGCAG-------------------ATCAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCAGCAGTCGCAGCAGCAGC------AG------------------G------CGCAG------CAGACTCCTGTGATGAATGAGGTGAGTGGAGCGTGCTGAAAGTCA---ACAGGAACAGGCACTTAAGGG-CCGTCT---------------------------------------ACTGCCCAGA-------------------ATCGGCACTCTTGCGAGTGCA---------------------TTTATTGATA---------------ATGAACAGT-----------------------------GGAAT---------G-----------------------------------------------------------------------------------------------------------------------------------------AAAAGTCTGT------ATTTAGCCTAGAACGCGGTGCTAAAACAAGTTAACATTTAAATATTATCAATT-------------------AAA-AT-----ATGATTACAAGAATCAATTTAAGAAATGAATGCCTCTGC----------------------------------TA-------TTGGGA-----AATATAGATAAT-------------------GGT-------------CCAAATGATCGCCATTTTA-ATC-------------------------------------------------------GATTTC--CTCTA-CATCCCTCGTTTCAGTGCATTCGTTCTGACAGTTTGGAGAGTATCGGTGACGTCAGCTCGTCCCT--------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAGTTTGGAGAGTATCGGTGA...............................................2411.00100000000000001000
...........CAGCAGCAGC------AG------------------G------CGCAG------CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.08100000000000100000
...................GC------AG------------------G------CGCAG------CAGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16150.07100000000001000000
droSec2
AGCAGCAGTCGCAGCAGCAGC------AG------------------G------CGCAG------CAGACTCCGGTTATGAATGAGGTGAGTGGAGCGTGCTGAAAGTCA---ACAGGAACAGGCACTTAAGGG-CCGTCT---------------------------------------ACTGCCCAGA-------------------ATCGGCACTCTTGCGAGTGCA---------------------TTTATTGATA---------------ATGAACAGT-----------------------------GGAAT---------G-----------------------------------------------------------------------------------------------------------------------------------------AAAAGTCTGT------ATTTAGCCTAGAACGCGGTGCTAAAACAAGTTAACATTTAAATATTATCAATT-------------------AAA-AT-----ATGAATACGAGAATCAATTTAAAAAATGAATGCCTTTGC----------------------------------TA-------TTGGGA-----AATATAGATAAT-------------------GGT-------------CCAAATGATCGCCATTTTA-ATC-------------------------------------------------------GATTTC--CTCTA-CATCCCACGTTTCAGTGCATTCGTTCTGACAGTTTGGAGAGTATCGGTGACGTCAGCTCGTCCCT--------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..CAGCAGTCGCAGCAGCAGC------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.0810010
.GCAGCAGTCGCAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.0710001
AGCAGCAGTCGCAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20140.0710001
dm3
AGCAGCAGTCGCAGCAGCAGC------AG------------------A------CGCAG------CAGACTCCGGTGATGAATGAGGTGAGTGGAGCGTGCTGAAAGTCG---ACAGGAACA-GCACTTAAGGGGCCGTCT---------------------------------------ACTCCCCAGA-------------------ATTGGCACTCTTGCGAGTGCA---------------------TTTATTGATA---------------ATGAACAGT-----------------------------GCATT---------A---AA-------------------------------------------------------------------GCGC-------------------------------------------------------------ATAAGTCTGA------ATTTAGCTTAGCAAGC----------------------------TTATCAATT-------------------AAA-ATATTGTATAAATACAAGAATCAAATTA--GAATGAATGCCCTATC----------------------------------TG-------TTGGAA-----AATATAGACCAT-------------------GTG-------------CTAAATGATCGCCATTTTA-ATC-------------------------------------------------------GATTTC--CTCTA-CATTCCTCGTTTCAGTGCATTCGTTCCGACAGTTTGGAGAGTATCGGTGACGTCAGCTCGTCCCT--------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------GTG-------------CTAAATGATCGCCA...............................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTC--CTCTA-CATTCCTCGTTTCAG..................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................TGAAAGTCG---ACAGGAACA-G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGAACAGT-----------------------------GCATT---------A---AA-------------------------------------------------------------------GCGC-------------------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATGCCCTATC----------------------------------TG-------TTGCG..................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CAGCAGTCGCAGCAGCAGC------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.2730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATGCCCTATC----------------------------------TG-------AA.....................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CAGCAGTCGCAGCAGCAGC------AG------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...AGCAGTCGCAGCAGCAGC------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
...AGCAGTCGCAGCAGCAGC------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18130.0810000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGCAGCAGTCGCAGCAGCAGC------AG------------------G------CGCAA------CAGACTCCGGTGATGAATGAGGTGAGTGGAGCGTGTTGAAAGTCA---ACAGGAACAGGCACTTAAGGG-CCGTCT---------------------------------------ACTCCCCAGA-------------------ATCGGCACTCTTGCGAGTGCA---------------------TTTATCAATA---------------ATGACCAGT-----------------------------GCATT---------A---GA-------------------------------------------------------------------GCAA-------------------------------------------------------------AAAAGTCTTG------GATTAGCTTAGTACACGGTG--AAAAACAGTTGATATTGATATATTTTTAGTT-------------------TAA-AT-----ATGAATTTAAGAATACTTTTCAAAAACTAATTCCTTAGC----------------------------------TG-------ATAGGGACATCAATACAGACAATATGCCAATTGGGGTCTTACCTT-------------CCGAATGATCATTATATTG-ATC-------------------------------------------------------GATTTC--CTCTC-CGCCTCTTGTTTCAGTGCATTCGTTCGGACAGTTTGGAGAGCATCGGTGACGTCAGCTCGTCCCT--------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
AGCAGCAGTCGCAGCAGCAGC------AG------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2370.1410000010
droYak3
AGTCGCAGCAGCAACAGCAGC------AG------------------G------CGCAG------CAGACTCCGGTGATGAATGAGGTGAGTGGAGCGTGTTGAAAGACA---ACAGGAACAGGCACTTA-GGG-CCGTCT---------------------------------------ACTCCCCAGA-------------------TTCGGAACCCTTGCGTGTGCA---------------------TTTATTAATA---------------ATGCACAGT-----------------------------GCATT---------A---AGTCT----------------------------------------------------------------GCAA-------------------------------------------------------------ATAAGTCTTAGCTTAGATTTAGCTTAGTACACGATA--AAAAAAAGTTTATATTTATATAAGTTCATTT-------------------TAT-AT-----ATAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATCGTTTCAGTGCATTCGTTCGGACAGCTTGGAGAGCATCGGTGACGTCAGCTCGTCCCT--------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.GTCGCAGCAGCAACAGCAGC------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.17101000000000
.....CAGCAGCAACAGCAGC------AG------------------G------CGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2380.13100000010000
...CGCAGCAGCAACAGCAGC------AG------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
droEug1
AACAGCAGTCGCAGCAG---C------AG------------------G------CGCAG------CAGACTCCGGTGATGAATGAGGTGAGTGGAGCGTGTTGAAAGTCA---ACAGGAACAGGCACTTA-GGG-CCATCT---------------------------------------CCTCCGCAGA-------------------ATTGGCCGCCTTGCGTATTCA---------------------TTTATTACAA---------------ATTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGCAGCAGTCGCAACAGCAGC------AG------------------T------CGCAG------CAGACCCCGGTGATGAATGAGGTGAGTGGAGCGTGCTGAAAGTGG---ACAGGAACAGGCACTTA-GGA-CCATCC---------------------------------------ACTGCCC-GA-------------------ATCGGGACT-TTGCGTGCCCA---------------------TTTATTAAAT---------------GTTAATAGT-----------------------------ACATT---------G---AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
ACTTAAATTTCTTTAT-----------------------------------------------------------------------------------------------------GAATAAATACTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAACTTAATCAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA-ATATT------------------------------AAAGCCTCTCT------------------------------GAGTTT-------ATAGC-------AAATTGTTAAC-------------------ATT-------------CCAACTGATACTTATTCCG-ATC-------------------------------------------------------AATTTC--TTCTT-TTTATCTCCTTTCAGTGCATTCGCTCGGATAGTTTGGAAAGCATCGGTGACGTCAGCTCGTCCCT--------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGCAGTCGCAGCAGCAGCAGC------AG------------------C---AATCGCAG------CAGACTCCGGTGATGAATGAGGTGAGTGGAGCGTGTTGAAAGTCA---ACAGGAACCGGCACTTAAGGG-CCATAT---------------------------------------ACTCCCCAGC-------------------ATTGGCAATCCTGCGTGTTCA---------------------TTTATTAATA---------------AATAATA--------------------------------CGCT---------C---CA----------TTA-------------CA---------------------------------------ACAGGCAATTAATACTTGGTATTGCTACTATACAATAAGACTGCTGTCTGGATAAAACTGGAATGAA---TCTGT------GCATAGCATTGTTAGG----------------------------TTTTCACC-ACAAAATTTTTCACTAAATAGAAATATG------------------------------CAATTTTATTTTTAGCGTGAATTTTCCTAAAGTAAAGCCAAGAGCTT-------CTATC-------AA--------------AATTAGGTTTTTAAGTTCTGGTA--GGTAACCAGTTGATCACCATTTTG-ATC---------------------------------------------------------CTTC--TTCTC-CTTCTATCGTTGCAGTGCATTCGTTCGGATAGTTTGGAAAGTATTGGTGACGTCAGTTCGTCGCT--------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AGCAGAC---GCAGCAGCAGC------AA------------------T------CGCAG------CAGACCCCGGTGATGAATGAGGTGAGTGGAGCGCGTTGAAAGTCA---ACAGGAACTGGCACTTAAGGG-CCATCT---------------------------------------ACTCCCCAGA-------------------ATTGGCAT-CCTGCGTGTTCA---------------------T-TATTAATA---------------AATAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AGCAGCAGTCGCAACAGCAGC------AGTCGCAACAG---CAGCAGACGCAA------CAGCAGCAGACCCCGGTGATGAATGAGGTGAGTGGAGCGTGTTGAAAGTTA---ACAGGAGCAGGCACTTAAGAA-CCATCC---------------------------------------ACTCCTCTGA-------------------ATGGCAGTTCTTGCGTGTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGCAACAAGCGCAGCAGCAGC------AA------------------A------CGCAACAACAGCAGACTCCGGTGATGAATGAGGTGAGTGCTGTGCGATGAAAGTTT---ACAGGAACAGGCACTTAAGGT-CCAGTTT--------------------------------------CTTACCAAGACTCCTTGATAGCTTAAGCGATCGACACTTTTAAGTGTTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCGGTTCTTAAT-----TAATATATATATACCTTAAT----------------TATATAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAA--CTCTTATATA------------A---------TT-ATCTCTCG--ATAGTGCATCCGTTCGGACAGCTTGGAGAGCATCGGTGACGTTAGTTCTTCGCTGGGAAATCCTCCATATATACCGGCAGCATCAGSizeHit CountTotal NormTotal
No Reads
droAna3
AACAGCAGCAGCAACAACAGC------AG------------------C------AGCAA------CAGACTCCGGTGATGAATGAGGTGAGTGGAGCGTGTTGAAAGTCA---ACAGGAACAGGCACTTAAAGTG-GAGCTCCGCCTTAATATTT-TTTTCGCAGTTCGCATTTGTGCGTACTGCC-----------------------ATTGGCATTCTTGTGTGTCTAAGTGG--------------------------GGAAGATTATG-------------------------------------------------------------------------------------------------------------------GCAGCGAATAGTTCACTA-------------------------------------------------------------AAAA------------------------------------------------------------------------------------TTA-ATCTA------------------------------GAAGC----------------------------------------AGTCGTTTTATGGGAATATTAA-------------------------------------AGGGGCAGAGAAAGGGGATACCTCTTAGGTTCCTCTTCCGAAAAAATAATATTAAAATAATG------------CA---------------------TT-CTTTTATTATTTCAGTGCATCCGTTCGGATAGCTTGGAGAGCATTGGCGATGTCAGCTCGTCGCT--------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCTTGGAGAGCATTGGCGATGTC...........................................2612.002000002
...................................................................GACTCCGGTGATGAATGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCATTGGCGATGTCAGCT.......................................2111.001000010
.........AGCAACAACAGC------AG------------------C------AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.255050000
...........CAACAACAGC------AG------------------C------AGCAA------CAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2270.141001000
..........GCAACAACAGC------AG------------------C------AGCAA------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
.......GCAGCAACAACAGC------AG------------------C------AGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.ACAGCAGCAGCAACAACAGC------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
............AACAACAGC------AG------------------C------AGCAA------CAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...AGCAGCAGCAACAACAGC------AG------------------C------AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
...AGCAGCAGCAACAACAGC------AG------------------C------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
.........AGCAACAACAGC------AG------------------C------AGCAA------C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
............AACAACAGC------AG------------------C------AGCAA------CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
......AGCAGCAACAACAGC------AG------------------C------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
...AGCAGCAGCAACAACAGC------AG------------------C------AGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000001
.............ACAACAGC------AG------------------C------AGCAA------CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
droBip1
AACAGCAGCAACAACAGCCGC------AG------------------C------AGCAA------CAGACTCCGGTGATGAATGAGGTGAGTGGAGCGTGTTGAAAGTCA---ACAGGAAGAGGCACTTAAAGTG-GAGCTCCGCCTTAATATTTATTTTTGCATTTGGCAGTTGTGCGTTCTGCC-----------------------ATTGGCATTCTTGGGTGTCTAAGTGG--------------------------GGAAGAT-------------TAGAG---------------------------GGGAACC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------ATCATTTAAAAGCATTCAT----------------AACAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAAT-----------------------------TTT-AATATATTATTTCAGTGCATCCGCTCGGATAGCTTGGAGAGCATTGGCGATGTCAGCTCCTCGCT--------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AGCAGCAGACACAGTCACAGTCCCAGAACTTGCCACAGTCTCAGCAGAACCCA------CAGCAGCAGACTCCAGTGATGAATGAGGTGAGTGGATCGTGTTGAAAGTCA---ACAGAAA-AGGCACTTTAAGTG-CGGGTC------------------------------------------CTCAGACTCC---------------TTCGGGGTTTATGCGTGGC-------CTGAATCAGAATATCATTAATTGATGGGAGGATCCTGAGGCAAGATCAGCGTCTGCTACAAAAACCAACATAAAGATATGGAACCAAAGCTAGGAATATTCTGCATATCTTTCATAGATATTA-----TAGCCCAAAACTCCTAAGAT-----------------------------------------------------------------------------------------------------TTATC---------------------------------------------------------------------------------------------------------------------------------------------------------------CACC-------AAA-----AA------------------GTATC-------------TAAAAC------CATACTT-ATA-------------------------------------------CA------------TTATCTCTCTCTCTCTCTCTATTCCAGTGCATTCGTTCCGATAGTTTGGAGAGCATTGGCGATGTGAGCTCTTCTCT--------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................GGTGAGTGGATCGTGTAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1870.1410100000000
droPer2
AGACACAGTCACAGTCCCAGA------ACTTGCCACAGTCTCAGCAGAACCCA------CAGCAGCAGACTCCAGTGATGAATGAGGTGAGTGGATCGTGTTGAAAGTCA---ACAGAAA-AGGCACTTTAAGTG-CGGGTC---------------------------------------CTCC---GGCTCC---------------TTCGGGGTTTATGCGTGGC-------CTGAATCAGAATATCATTAATTGATGGGAGGATCCTGAGGCAAGATCAGCGTCTGCCTCAAAAACCAAGATAAAGATGTGGAACCAAAGCTAGGAATATTCTGCATATCTTTCATAGATATTATATTATAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-----AA------------------GTATC-------------TAAAAC------CATACTT-ATA-------------------------------------------CA------------ATATCTCTCTCTCTCTCTCTATTCCAGTGCATTCGTTCCGATAGTTTGGAGAGCATTGGCGATGTGAGCTCTTCTCT--------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AGCAACAGCAACAGCAGCAAC------AT------------------C------AGCAACAGCAGACAACGCCCGTGATGAATGAGGTAAGTTGATTGTGTTGAAAGTGA---GGCAGAAAAAGCACTTAAATAA-AAATTG--------------------------------------------------------------------------------CATCTG--------------------------------------------------------------CTTA------------------------------------------------------------ATTA-----TTAACGAAATATCCCAAGATTATTGCAAGAGTTTTCGCACAA-------------------------------------------------------------GAAATTCTTG------G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGAGAAATAATTAATTTTCATCTTA-TTC-CCCCACCT------------------AATG------------TATTCACTTTCCGTTTCA--TTCTT-CTTTCATTGATCCAGTGTATACGTTCGGATAGCTTGGAGAGCATTGGAGATGTTAGCTCATCACT--------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....ACAGCAACAGCAGCAAC------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10200020
AGCAACAGCAACAGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
............AGCAGCAAC------AT------------------C------AGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
..CAACAGCAACAGCAGCAAC------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
droVir3
AGCAGCAGCAGCAGCAGCAGC------G----------------------------CAA------AA---GCCGGA---------------GAGAGCGTGACTGAAGCAG---CCAGGCAAACGGAAGCGCGTG-CCGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTTTACGGAAATATAATAACACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGTTCACGGCACATAAACGACACT--------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............GCAGCAGC------G----------------------------CAA------AA---GCCGGA---------------GAGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000000010000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGTTCACGGCACA...........................................1911.001000000000000000000000000000000010000000000000000000000000000000
..........................................................A------AA---GCCGGA---------------GAGAGCGTGACTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................TTACGGAAATATAATAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
....................C------G----------------------------CAA------AA---GCCGGA---------------GAGAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................AGGCAAACGGAAGCGCGTG-.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................................AGCAG---CCAGGCAAACGGAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................AG---CCAGGCAAACGGAAGCGCGTG-CC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
........................................................................CGGA---------------GAGAGCGTGACTGAAGCAG---C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000000000000000000000000000000000000000000000000000000000000
...........................................................................A---------------GAGAGCGTGACTGAAGCAG---CCAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................G---CCAGGCAAACGGAAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
.........................................................AA------AA---GCCGGA---------------GAGAGCGTGACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
................GCAGC------G----------------------------CAA------AA---GCCGGA---------------GAGAGCGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000100000000000000000000000000000000000000000
...........................................................................A---------------GAGAGCGTGACTGAAGCAG---C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................GACTGAAGCAG---CCAGGCAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................GAAATATAATAACACAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------............................................................1911.001000100000000000000000000000000000000000000000000000000000000000
..................AGC------G----------------------------CAA------AA---GCCGGA---------------GAGAGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000001000000000000000000000000000000000000000000000000000000
....................C------G----------------------------CAA------AA---GCCGGA---------------GAGAGCGTGACTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000100000000000000000000000000000000000000000
........................................................................CGGA---------------GAGAGCGTGACTGAAGCAG---CC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CAGGCAAACGGAAGCGCGTG-CC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
..CAGCAGCAGCAGCAGCAGC------G----------------------------CAA------AA---........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.331000000000000000000000000000000000000000000000000000000000000010
...AGCAGCAGCAGCAGCAGC------G----------------------------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000100000000000000000000000000000000000000000000000000000
droMoj3
AGCAGCAGCAGCAGCAGCAGC------AT------------------C------AGCAG------CAG----CAGCAGCAAGTGCAGCAAGTGCAACATC-----AGGCA---GCAAGAGCAGCTGCACTGGAT-TCGTCA---------------------------------------ACTGATCAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............AGCAGC------AT------------------C------AGCAG------CAG----CAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000100
....GCAGCAGCAGCAGCAGC------AT------------------C------AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
................GCAGC------AT------------------C------AGCAG------CAG----CAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
............AGCAGCAGC------AT------------------C------AGCAG------CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
......AGCAGCAGCAGCAGC------AT------------------C------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000010
................GCAGC------AT------------------C------AGCAG------CAG----CAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
droGri2
AGCAGCAACAGCAGCAGCAGC------AG------------------G------CA-GA------CGAACGTCAGCAACAGTATGAGCACATGCGATATGCCCAAAGTCATGGACACGGTCTGGCACCCAATGA-C--------------------------------------------ACTACCGCAG-------------------ATCAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
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Generated: 05/18/2015 at 05:46 PM