dsi_22552

exon [2r_5608397_5608636_-]; CDS [2r_5608397_5608636_-]; exon [2r_5607806_5608334_-]; CDS [2r_5607806_5608334_-]; intron [2r_5608335_5608396_-]

##################################################--------------------------------------------------------------################################################## GAGCTCACTTCATGGACAACCATTTCAAGACGACACCATTCGAGAAGAATGTAAGACTCAACTGAGAGTTAAGGAAAATGAGTGTAGTTAACCATGCTATTGGCTTTCCTAGGCTCCTGTTATCCTGGCGTTGCTCGGCGTTTGGTACTCCAACTTCTTCAA ************************************************......((.....(((((((.......(((.((.......)))))......)))))))..))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	M025 embryo	M053 female body	GSM343915 embryo	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries
.................................................................................................................CTCCTGTTATCCTGGCGTTGCTCGGC.......................	26	0	1	3.00	3	2	0	1	0	0	0	0	0
...................................................................................................................................TGCTCGGCGTTTGGTACTC............	19	0	1	2.00	2	1	1	0	0	0	0	0	0
.........................................................................................................................ATCCTGGCGTTGCTCGGC.......................	18	0	1	2.00	2	1	0	1	0	0	0	0	0
.........................................................................................................................ATCCTGGCGTTGCTCGGCGTTTGG.................	24	0	1	1.00	1	0	0	0	0	0	1	0	0
.........................................................................................................................ATCCTGGCGTTGCTCGGG.......................	18	1	1	1.00	1	1	0	0	0	0	0	0	0
......................................................................................................................................TCGGCGTTTGGTACTCCAACTTC.....	23	0	1	1.00	1	0	1	0	0	0	0	0	0
..................................................................................................................................TTGCTCGGCGTTTGGTACTCC...........	21	0	1	1.00	1	0	1	0	0	0	0	0	0
..GCTCACTTCATGGACAACC.............................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0
...................................................................................................................................TGCTCGGCGTTTGGTACTCCAACTT......	25	0	1	1.00	1	0	0	0	0	0	0	0	1
................................................................................AGTGTAGTTAACCATGCTATT.............................................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0
...................................................................................................................CCTGTTATCCTGGCGTTGCTC..........................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
...................................................................................................................CCTGTTATCCTGGCGTTGCTCGGC.......................	24	0	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................................................................CGGCGTTTGGTACTCCAACT.......	20	0	1	1.00	1	0	0	0	0	1	0	0	0
...................................................................................................................................TCCTCGGCGTTTGGTACT.............	18	1	1	1.00	1	0	1	0	0	0	0	0	0
...........................................................................................................................CCTGGCGTTGCTCGGCGTTTGGTACTCC...........	28	0	1	1.00	1	1	0	0	0	0	0	0	0
..............................................................................................................................GGCGTTGCTCGGCGTTTGGTACTC............	24	0	1	1.00	1	1	0	0	0	0	0	0	0
...CTCACTTCATGGACAACCATTTCAAGAC...................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0
...................................................................................................................................TGCTCGGCGTTTGGTACTCCAACTTCTT...	28	0	1	1.00	1	0	0	0	1	0	0	0	0
.............................................................................ATGAGTGTAGTTAACCATGCTATT.............................................................	24	0	1	1.00	1	0	0	0	0	1	0	0	0
......................................................................................................................................TCGGCGTTTGGTACTCCAAC........	20	0	1	1.00	1	1	0	0	0	0	0	0	0
.............GGACAACCATTTCAAGACGACACC.............................................................................................................................	24	0	1	1.00	1	0	0	1	0	0	0	0	0
..................ACCATTTCAAGACGACACCATTCGAGA.....................................................................................................................	27	0	1	1.00	1	0	0	0	0	0	0	1	0
................................................................AGAGTTAAGGAAAAT...................................................................................	15	0	4	0.25	1	0	0	0	0	0	1	0	0

CTCGAGTGAAGTACCTGTTGGTAAAGTTCTGCTGTGGTAAGCTCTTCTTACATTCTGAGTTGACTCTCAATTCCTTTTACTCACATCAATTGGTACGATAACCGAAAGGATCCGAGGACAATAGGACCGCAACGAGCCGCAAACCATGAGGTTGAAGAAGTT ************************************************......((.....(((((((.......(((.((.......)))))......)))))))..))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	M023 head
.TCGAGTGAAGTACCTGTTGT.............................................................................................................................................	20	1	1	1.00	1	0	0	1
........................AGTTCTGCTGTGGTAAGCTCT.....................................................................................................................	21	0	1	1.00	1	1	0	0
............ACCTGTTGGTAAAGTTCTGCT.................................................................................................................................	21	0	1	1.00	1	1	0	0
........AAGTACCTGTTGGTAAAGTTC.....................................................................................................................................	21	0	1	1.00	1	1	0	0
CTCGAGTGAAGTACCTGTTGG.............................................................................................................................................	21	0	1	1.00	1	0	1	0
......................AAAGTTCTGCTGTGGTAAGCT.......................................................................................................................	21	0	1	1.00	1	0	1	0
........................GGTTCTGCTGTGGTAAGC........................................................................................................................	18	1	2	0.50	1	0	0	1
............................CTGCTGTGGTAAGCT.......................................................................................................................	15	0	2	0.50	1	0	1	0

Species	Coordinate	ID	Alignment
droSim2	2r:5608285-5608446 -	dsi_22552	GAGCTCACTTCATGGACAACCATTTCAAGACGACACCATTCGAGAAGAATGTAAGAC-TCAACT--------------GAG--AGTTAAGGAAA--AT---------GAGTGTAGTTAACCATGC-------------T--------------ATTG-G--CTT-------TCCTAGGCTCCTGTTATCCTGGCGTTGCTCGGCGTTTGGTACTCCAACTTCTTCAA
droSec2	scaffold_1:2437275-2437436 -		GAGCTCACTTCATGGACAACCATTTCAAGACGACACCATTCGAGAAGAATGTAAGAC-TCAACT--------------GAG--AGTTAAGGAAA--AT---------GAGTGTAGTTAACCATGC-------------T--------------ATTG-G--CTT-------TCCTAGGCTCCTGTTATCCTGGCGTTGCTCGGCGTTTGGTACTCCAACTTCTTCAA
dm3	chr2R:4799410-4799571 -		GAGCTCACTTCATGGACAACCATTTCAAGACGACACCATTCGAGAAGAATGTAAGAC-TCAACT--------------GAG--AGTTAAGTAAA--AT---------GATTATAGTTAACCATTT-------------T--------------ATTG-G--CTT-------TCCTAGGCTCCTGTTATCCTGGCGTTGCTAGGCGTTTGGTACTCCAACTTCTTCAA
droEre2	scaffold_4929:17850415-17850578 +		GAGCTCATTTCATGGACAACCATTTCAGGACGACACCTTTCGAGAAAAATGTAAGGT-TCAACTGAAG------------A--AGTTTACCCAA--AT---------GATTATAGCTAATCACTT-------------C--------------ATTG-G--ATT-------TTCAAGGCTCCCGTTATCCTGGCTTTGCTCGGCGTTTGGTACTCCAACTTCTTCAA
droYak3	2L:17457437-17457594 -		GAGCTCATTACATGGACAACCATTTCAGGACGACACCATTGGAGAAAAATGTAAGGT-TCAACTAAAG------------G--AGTTAAACAAA--A--------------ATAGCTAACCACGT-------------T--------------ATTG----GTT-------TCTCAGGCTCCCGTTATCCTGGCGTTGCTCGGCGTTTGGTACTCGAACTTTTTCAA
droEug1	scf7180000409183:453422-453584 -		GTGCCCATTACATGGATAACCATTTCAGGACGACACCTTTCGAGAAAAATGTAATAC-CCAGCT--------------TAGTGTGTTATTA--ATAGC---------TAATATTATTGAC-ATTCC------------A--------------ATTT----CAT-------TATTAGGCTCCTGTAGTCCTGGCTTTGCTGGGTGTTTGGTACTCCAACTTCTTCAA
droBia1	scf7180000302291:2743548-2743710 -		GAGCACATTACATGGATAACCACTTCAGGTCGACGCCGTTCGAGAAGAATGTAAGAC-CCAGTG--------------AAG--TGTGTTTTTAAATGA---------TTTTGTTGTTAACCATTC-------------C--------------GTTT----GCT-------TACTAGGCTCCTGTGGTCCTGGCCCTACTCGGAGTTTGGTACTCCAACTTCTTCAA
droTak1	scf7180000415386:441677-441839 +		GAGCCCATTACATGGATAACCACTTCAGGTCCACGCCGTTCGAGAAGAATGTAAGAT-CAAGCG--------------TAATGAGCTATTGAAA--GC---------TATTCTTGTTTACCATCC-------------A--------------ACTA----CCT-------TTTTAGGCTCCTGTCATCCTGGCCCTGCTCGGCGTTTGGTACTCCAACTTCTTCAA
droEle1	scf7180000490483:55891-56047 +		GCGCTCACTACATGGATAATCATTTCCGATCGACGCCATTCGAGAAAAATGTAAGAT-TTAA------------------G--GCTCAAGTGAC--AA---------GCTTAAAGTTAACAATTT-------------C--------------AAAT----GTT-------TGTTAGGCTCCCGTTGTCCTGGCCTTGCTCGGCGTTTGGTACTCCAACTTCTTCAA
droRho1	scf7180000780108:161375-161536 -		GTGCTCACTATATGGATAATCATTTTAGGACGACGCCATTCGAGAAAAATGTAAGAA-TTCATGG-------------TCG--TGTGACATCGA--AA---------GCTTCAACTTAACCATTAC------------A--------------ATTT-G--A---------TTTTAGGCTCCTGTGGTCCTGGCCTTGCTTGGCGTTTGGTACTCAAACTTCTTTAA
droFic1	scf7180000453851:1498476-1498635 +		GTGCCCACTACATGGACAACCACTTCAGGTCCACGCCATTCGAGAAAAATGTAACAT-TACA-----GCT--------TAT--TACTGAATTAA--GT---------CAC-ATTATTTACCG-GTCCATTT-------T--------------A-----------------TTGTAGGCTCCAGTAATCCTGGCCTTGCTTGGCATTTGGTACTCCAACTTCTTCAA
droKik1	scf7180000302682:1362582-1362742 -		GCGCCCATTATATGGATAACCACTTCAGGTCAACGCCGTTTGAGAAAAATGTAAGTT-AAGGCC--------------C----AGTTCCATGAA--AT---------TATTGATCCTTACCGAGTCCCCTC-------C--------------AATG---------------GCTAGGCACCTGTTATCCTGGCGTTGCTTGGTGTCTGGTACTCCAACTTCTTCAA
droAna3	scaffold_13266:1217752-1217910 +	dan_1714	GCGCTCACTACATGGATAATCACTTCAAGACGATGCCCTTCGAGAAGAATGTGAGTC-TCT--C--------------AAGT---------G---AAT-----------C-----CCTCTCAAG-------------TTCTGATGAT--AATCCTTG-G--GTTT-----CTTTAAGGCTCCTGTCATTTTGGCCGTTCTTGGAGTGTGGTACTCGAACTTCTTCAA
droBip1	scf7180000396730:2217350-2217504 +		GCGCCCACTACATGGACAACCACTTCAAGACGGTGCCCTTCGAGAAGAACGTAAGTC-ATGC--AA-------------AGT-AAATC-C-----------------------------CCAAG-------------TTTTGATGTTAAAAT-CCT--G--GTA-------TTTTAGGCTCCCGTCATTTTAGCCGTCCTGGGAGTGTGGTACTCGAACTTCTTTAA
dp5	3:13598417-13598583 +		GTGCCCATTACATGGATAATCACTTCAAGACATCGCCGCTGGACAAAAATGTAAGTC-GAGATT--------------GAT--ATTTGTGG--GCAGC-----------T-----CCTACCATG-------------TTTAAATATTTGG------------TTTTTTGGCTATCAGGCACCTGTCATTCTGGCTCTGCTGGGCGTCTGGTATTCGAACTTCTACAA
droPer2	scaffold_2:8021259-8021425 -		GTGCCCATTACATGGATAATCACTTCAAGACATCGCCGCTGGACAAAAATGTAAGTC-GAGATT--------------AAT--ATTTGTGG--GCAGC-----------T-----CCTACCATG-------------TTTAAATATTTGG------------TTTTTTGGCTATCAGGCACCTGTCATTCTGGCTCTGCTGGGCGTCTGGTATTCGAACTTCTACAA
droWil2	scf2_1100000004513:5282500-5282660 +		GTGCTCACTATATGGATAATCATTTCAAGACAAGTCCCTTGGAGAAAAATGTGAGTT-GTGTTTGAAA------------A--AAATTATCGATT----------------ATTTCTTATCT----------------------AATTGA---ATTT-G--CTG-------TTATAGGCACCCGTTATTCTGGCTCTATTGGGAGTCTGGTACTCGAATTTCTATAA
droVir3	scaffold_12875:1782528-1782693 -		GCGCCCATTTTATGGATACCCATTTTAAAACTGCACCACTGACCAAAAATGTGAGTGCATTTTTGAAA------------A--ATTTAAATGTT---T---------CATTATAAT----AT-AA------TAATGC-A--------------AATGTA--ATT-------CCTTAGGCACCTGTTATTCTGGCACTACTTGGCATTTGGTATTCGAATTTTTATAA
droMoj3	scaffold_6496:13708460-13708627 +		GTGCATACTATATGGATACTCATTTCCGCACTGCACCACTGGCGAAAAATGTAAGCG-TTGA----AAATCTTTACATGTA--A---------T--TAAATATAAATTAACATAGT-------GC-------------A--------------ATTTTCACATT-------TCGTAGGCACCCGTTATTCTGGCTCTGCTTGGCATTTGGTATTCCAATTTTTATAA
droGri2	scaffold_15112:3878045-3878107 -		TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------A--ATT-------TTGTAGGCACCTGTTGTGCTGGCCTTGCTTGGCATTTGGTATTCGAATTTTTATAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GAGCTCACTTCATGGACAACCATTTCAAGACGACACCATTCGAGAAGAATGTAAGAC-TCAACT--------------GAG--AGTTAAGGAAA--AT---------GAGTGTAGTTAACCATGC-------------T--------------ATTG-G--CTT-------TCCTAGGCTCCTGTTATCCTGGCGTTGCTCGGCGTTTGGTACTCCAACTTCTTCAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................................................CTCCTGTTATCCTGGCGTTGCTCGGC.......................	26	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGCTCGGCGTTTGGTACTC............	19	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATCCTGGCGTTGCTCGGC.......................	18	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATCCTGGCGTTGCTCGGCGTTTGG.................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................ATCCTGGCGTTGCTCGGG.......................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TCGGCGTTTGGTACTCCAACTTC.....	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TTGCTCGGCGTTTGGTACTCC...........	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..GCTCACTTCATGGACAACC..............................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGCTCGGCGTTTGGTACTCCAACTT......	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................AGTGTAGTTAACCATGC-------------T--------------ATT.......................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CCTGTTATCCTGGCGTTGCTC..........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CCTGTTATCCTGGCGTTGCTCGGC.......................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CGGCGTTTGGTACTCCAACT.......	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................CCTGGCGTTGCTCGGCGTTTGGTACTCC...........	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GGCGTTGCTCGGCGTTTGGTACTC............	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CTCACTTCATGGACAACCATTTCAAGAC....................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGCTCGGCGTTTGGTACTCCAACTTCTT...	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................AT---------GAGTGTAGTTAACCATGC-------------T--------------ATT.......................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................TCGGCGTTTGGTACTCCAAC........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GGACAACCATTTCAAGACGACACC..............................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................ACCATTTCAAGACGACACCATTCGAGA......................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................AG--AGTTAAGGAAA--AT---------........................................................................................................................	15	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

GAGCTCACTTCATGGACAACCATTTCAAGACGACACCATTCGAGAAGAATGTAAGAC-TCAACT--------------GAG--AGTTAAGGAAA--AT---------GAGTGTAGTTAACCATGC-------------T--------------ATTG-G--CTT-------TCCTAGGCTCCTGTTATCCTGGCGTTGCTCGGCGTTTGGTACTCCAACTTCTTCAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................GACGACACCATTCGAGAAGA...................................................................................................................................................................................	20	1	2.00	2	0	0	2	0
...............................................................................................................................................................................................GGCGTTGCTCGGCGTTTGGT................	20	1	2.00	2	1	1	0	0
........TTCATGGACAACCATTTCAAGACGACA................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
....................................................................................................................................................................................................TGCTCGGCGTTTGGTACTCCAAC........	23	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................TGGCGTTGCTCGGCGTTTGGTAC..............	23	1	1.00	1	0	1	0	0
..................................................................................................................................................................................CTCCTGTTATCCTGGCGTTGCTCGGC.......................	26	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................TATCCTGGCGTTGCTCGGCGTTT...................	23	1	1.00	1	0	1	0	0
................CAACCATTTCAAGACGACA................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
....................CATTTCAAGACGACACCATTCG.........................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
...............................GACACCATTCGAGAAGAATG................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
...........................AGACGACACCATTCGAGAAGAA..................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
..................................................................................................................................................................................CTCCTGTTATCCTGGCGTTG.............................	20	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................TATCCTGGCGTTGCTCGGCG......................	20	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................TGGCGTTGCTCGGCGTTTGGTACTCCA..........	27	1	1.00	1	1	0	0	0
...................................................................................................................................................................................................TTGCTCGGCGTTTGGTACTCC...........	21	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................ATCCTGGCGTTGCTCGGCGTTTG..................	23	1	1.00	1	0	1	0	0
...........................................................................................................................................................................................TCCTGGCGTTGCTCGGCGTACT..................	22	2	0.50	1	1	0	0	0

dm3

GAGCTCACTTCATGGACAACCATTTCAAGACGACACCATTCGAGAAGAATGTAAGAC-TCAACT--------------GAG--AGTTAAGTAAA--AT---------GATTATAGTTAACCATTT-------------T--------------ATTG-G--CTT-------TCCTAGGCTCCTGTTATCCTGGCGTTGCTAGGCGTTTGGTACTCCAACTTCTTCAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................AAGACGACACCATTCGAGAAGAATGCTC.............................................................................................................................................................................	28	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................CT--------------GAG--AGTTAAGTAAA--AT---------GATT....................................................................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGCTAGGCGTTTGGTACTCCAACTTC.....	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................CTGGCGTTGCTAGGCGTTTG..................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GGCGTTGCTAGGCGTTTGGTACTCC...........	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GCTAGGCGTTTGGTACTCCAACTTC.....	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................ATCCTGGCGTTGCTAGGCGTTTGGT................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................AGACGACACCATTCGAGAAGAATGCT..............................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGGCGTTGCTAGGCGTTTGGTG...............	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CGTTGCTAGGCGTTTGGTACTCCAACT.......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................CCATTCGAGAAGAATGCT..............................................................................................................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GAGCTCATTTCATGGACAACCATTTCAGGACGACACCTTTCGAGAAAAATGTAAGGT-TCAACTGAAG------------A--AGTTTACCCAA--AT---------GATTATAGCTAATCACTT-------------C--------------ATTG-G--ATT-------TTCAAGGCTCCCGTTATCCTGGCTTTGCTCGGCGTTTGGTACTCCAACTTCTTCAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................GGCTTTGCTCGGCGTTTGGT................	20	1	3.00	3	0	0	0	0	3	0	0
.................................................................................................................................................................................GCTCCCGTTATCCTGGCTTTGCTCGGC.......................	27	1	2.00	2	2	0	0	0	0	0	0
.........................................................................................................................................................................................TATCCTGGCTTTGCTCGGCGTTTGGT................	26	1	2.00	2	0	0	0	0	1	1	0
..............................................................................................................................................................................................TGGCTTTGCTCGGCGTTTGGTACTCCA..........	27	1	2.00	2	2	0	0	0	0	0	0
..........................................................................................................................................................................................ATCCTGGCTTTGCTCGGCGTTTGGT................	25	1	2.00	2	0	0	1	0	1	0	0
....................CATTTCAGGACGACACCTTTCGAGA......................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	2	0	0
.......TTTCATGGACAACCATTTCAGGACGACA................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0	0
.....................................................................................................................................................................................CCGTTATCCTGGCTTTGCTCGGC.......................	23	1	1.00	1	0	1	0	0	0	0	0
................CAACCATTTCAGGACGACACCTTT...........................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
............................GACGACACCTTTCGAGAAAAATGCT..............................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................CGTTATCCTGGCTTTGCTC..........................	19	1	1.00	1	0	0	0	0	0	1	0
..............GACAACCATTTCAGGACGA..................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................CCCGTTATCCTGGCTTTGCTCGGCGTTTG..................	29	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................CCGTTATCCTGGCTTTGCTC..........................	20	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................CTTTGCTCGGCGTTTGGT................	18	1	1.00	1	0	0	0	0	0	1	0
....................CATTTCAGGACGACACCTTTCGA........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..................ACCATTTCAGGACGACACCT.............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................ATCCTGGCTTTGCTCGGCG......................	19	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................TGGCTTTGCTCGGCGTTTGGT................	21	1	1.00	1	1	0	0	0	0	0	0
.....................ATTTCAGGACGACACCTTTCGA........................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
......................TTTCAGGACGACACCTTTCGA........................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
................CAACCATTTCAGGACGACACCTTTCGA........................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
................CAACCATTTCAGGACGACA................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
..................ACCATTTCAGGACGACACC..............................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
....TCATTTCATGGACAACCATTTCAGGAC....................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................TGGCTTTGCTCGGCGTTTGGTACTCCAAC........	29	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................CGTTATCCTGGCTTTGCTCGGCGTT....................	25	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................TATCCTGGCTTTGCTCGGC.......................	19	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................TTGCTCGGCGTTTGGTACTCCAACT.......	25	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................CTGGCTTTGCTCGGCGTTTGGTA...............	23	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................CGGCGTTTGGTACTCCAACTTCTTCAA	27	1	1.00	1	0	1	0	0	0	0	0
...........ATGGACAACCATTTCAGGACGACAC...............................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
..................................................GTAAGGT-TCAACTGAAG------------A--AGTTT...........................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................CTTTGCTCGGCGTTTGGTACTCCAA.........	25	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................TCACTT-------------C--------------ATTG-G--ATT-------TTCAAG..................................................	21	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................GGCTTTGCTCGGCGTTTGGTACTCCAACT.......	29	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................GCTCCCGTTATCCTGGCTTT..............................	20	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................T-------TTCAAGGCTCCCGTTATCC.....................................	20	1	1.00	1	1	0	0	0	0	0	0
.................AACCATTTCAGGACGACACCTTTCGA........................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................ATCCTGGCTTTGCTCGGCGTTTGGTA...............	26	1	1.00	1	0	0	0	0	1	0	0
.....................ATTTCAGGACGACACCTTTCGAGA......................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
..........CATGGACAACCATTTCAGGAC....................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
....TCATTTCATGGACAACCATTT..........................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................GCTTTGCTCGGCGTTTGGT................	19	1	1.00	1	1	0	0	0	0	0	0
.................AACCATTTCAGGACGACACCT.............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................CTTTGCTCGGCGTTTGGTACT.............	21	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................CTGGCTTTGCTCGGCGTTTGGT................	22	1	1.00	1	1	0	0	0	0	0	0
....................CATTTCAGGACGACACCTTT...........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
................CAACCATTTCAGGACGACACCTTTCGAGA......................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
.................AACCATTTCAGGACGACACCTTTCGAGA......................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................GCTCCCGTTATCCTGGCT................................	18	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................GTTATCCTGGCTTTGCTCGGCGTTTGGT................	28	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................GCTCGGCGTTTGGTACTCCAACTT......	24	1	1.00	1	0	0	0	0	1	0	0
....................CATTTCAGGACGACACCTTTCGAGAA.....................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................CTGGCTTTGCTCGGCGTTTGGTACT.............	25	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................TAGCTAATCACTT-------------C--------------ATTG-G--A.................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.................AACCATTTCAGGACGACACC..............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................TCACTT-------------C--------------ATTG-G--ATT-------TTCA....................................................	19	1	1.00	1	0	0	0	0	0	1	0
.................................CACCTTTCGAGAAAAATGCT..............................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1	0	0

droYak3

GAGCTCATTACATGGACAACCATTTCAGGACGACACCATTGGAGAAAAATGTAAGGT-TCAACTAAAG------------G--AGTTAAACAAA--A--------------ATAGCTAACCACGT-------------T--------------ATTG----GTT-------TCTCAGGCTCCCGTTATCCTGGCGTTGCTCGGCGTTTGGTACTCGAACTTTTTCAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................CATTTCAGGACGACACCATTGGA........................................................................................................................................................................................	23	1	4.00	4	0	0	1	0	0	0	3	0	0	0	0
...............................GACACCATTGGAGAAAAATG................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
....................................................................................................................................................................................................TGCTCGGCGTTTGGTACTCG...........	20	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
.....................ATTTCAGGACGACACCATTGG.........................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0
.......................TTCAGGACGACACCATTGGAGA......................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................................................GTTGCTCGGCGTTTGGTACTCGAAC........	25	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
........................TCAGGACGACACCATTGGAG.......................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CGGCGTTTGGTACTCGAAC........	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................CAGGACGACACCATTGGAGA......................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................GCGTTGCTCGGCGTTTGGTACTC............	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................TCAGGACGACACCATTGGAGAAAAAT.................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GCTCATTACATGGACAACCATTTCAGGA.....................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCCTGGCGTTGCTCGGCGTTTGGTACTCG...........	29	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................AACCATTTCAGGACGACACCATTGGAG.......................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CGGCGTTTGGTACTCGAACTTTTTCAA	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCCTGGCGTTGCTCGGCGTTTGGTACTC............	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................CCATTTCAGGACGACACCATT...........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................GCGTTGCTCGGCGTTTGGTACTCGA..........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CGTTGCTCGGCGTTTGGC................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................AACCATTTCAGGACGACACCATTGGA........................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GTTTGGTACTCGAACTTTTTT..	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................TTTCAGGACGACACCATTGGAGA......................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................CTGGCGTTGCTCGGCGTTTGGT................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............GGACAACCATTTCAGGACGACACC..............................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................GACGACACCATTGGAGAAAAATGCT..............................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................TGCTCGGCGTTTGGTACTC............	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................CATTTCAGGACGACACCATT...........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......ATTACATGGACAACCATTTCAGGAC....................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TATCCTGGCGTTGCTCGGCGTTTGG.................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......ATTACATGGACAACCATTTCAGGACG...................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....TCATTACATGGACAACCATTTCAGGAC....................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........ATGGACAACCATTTCAGGACGACACC..............................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................CGGCGTTTGGTACTCGAACT.......	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................TTGGTACTCGAACTTTTTCAA	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GTTGCTCGGCGTTTGGTA...............	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
................................ACACCATTGGAGAAAAATGTAAG............................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................TGCTCGGCGTTTGGTACTCGAAC........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................TATCCTGGCGTTGCTCGGC.......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TCCTGGCGTTGCTCGGCGTTTGG.................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................GTTGCTCGGCGTTTGGTACTCGAACTT......	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................CTCCCGTTATCCTGGCGTTGCTC..........................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GTTGCTCGGCGTTTGGTACT.............	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................ATTTCAGGACGACACCATTGGAGA......................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................ATCCTGGCGTTGCTCGGCGTTTGGC................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......ATTACATGGACAACCATTTCAGGACGA..................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................CAACCATTTCAGGACGACACCATTG..........................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GTTGCTCGGCGTTTGGTAC..............	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................GTAAGGT-TCAACTAAAG------------G--AGTTA...........................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GTGCCCATTACATGGATAACCATTTCAGGACGACACCTTTCGAGAAAAATGTAATAC-CCAGCT--------------TAGTGTGTTATTA--ATAGC---------TAATATTATTGAC-ATTCC------------A--------------ATTT----CAT-------TATTAGGCTCCTGTAGTCCTGGCTTTGCTGGGTGTTTGGTACTCCAACTTCTTCAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAGCACATTACATGGATAACCACTTCAGGTCGACGCCGTTCGAGAAGAATGTAAGAC-CCAGTG--------------AAG--TGTGTTTTTAAATGA---------TTTTGTTGTTAACCATTC-------------C--------------GTTT----GCT-------TACTAGGCTCCTGTGGTCCTGGCCCTACTCGGAGTTTGGTACTCCAACTTCTTCAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GAGCCCATTACATGGATAACCACTTCAGGTCCACGCCGTTCGAGAAGAATGTAAGAT-CAAGCG--------------TAATGAGCTATTGAAA--GC---------TATTCTTGTTTACCATCC-------------A--------------ACTA----CCT-------TTTTAGGCTCCTGTCATCCTGGCCCTGCTCGGCGTTTGGTACTCCAACTTCTTCAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCGCTCACTACATGGATAATCATTTCCGATCGACGCCATTCGAGAAAAATGTAAGAT-TTAA------------------G--GCTCAAGTGAC--AA---------GCTTAAAGTTAACAATTT-------------C--------------AAAT----GTT-------TGTTAGGCTCCCGTTGTCCTGGCCTTGCTCGGCGTTTGGTACTCCAACTTCTTCAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTGCTCACTATATGGATAATCATTTTAGGACGACGCCATTCGAGAAAAATGTAAGAA-TTCATGG-------------TCG--TGTGACATCGA--AA---------GCTTCAACTTAACCATTAC------------A--------------ATTT-G--A---------TTTTAGGCTCCTGTGGTCCTGGCCTTGCTTGGCGTTTGGTACTCAAACTTCTTTAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTGCCCACTACATGGACAACCACTTCAGGTCCACGCCATTCGAGAAAAATGTAACAT-TACA-----GCT--------TAT--TACTGAATTAA--GT---------CAC-ATTATTTACCG-GTCCATTT-------T--------------A-----------------TTGTAGGCTCCAGTAATCCTGGCCTTGCTTGGCATTTGGTACTCCAACTTCTTCAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCGCCCATTATATGGATAACCACTTCAGGTCAACGCCGTTTGAGAAAAATGTAAGTT-AAGGCC--------------C----AGTTCCATGAA--AT---------TATTGATCCTTACCGAGTCCCCTC-------C--------------AATG---------------GCTAGGCACCTGTTATCCTGGCGTTGCTTGGTGTCTGGTACTCCAACTTCTTCAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GCGCTCACTACATGGATAATCACTTCAAGACGATGCCCTTCGAGAAGAATGTGAGTC-TCT--C--------------AAGT---------G---AAT-----------C-----CCTCTCAAG-------------TTCTGATGAT--AATCCTTG-G--GTTT-----CTTTAAGGCTCCTGTCATTTTGGCCGTTCTTGGAGTGTGGTACTCGAACTTCTTCAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................GTGAGTC-TCT--C--------------AAGT---------G---AAT-----------C-----CCTCT...........................................................................................................	25	1	9.00	9	2	0	0	0	0	7
.................................................................................................................................................AT--AATCCTTG-G--GTTT-----CTTTAAG..................................................	22	1	6.00	6	1	0	0	2	0	3
..................................................GTGAGTC-TCT--C--------------AAGT---------G---AAT-----------C-----CCTCTCA.........................................................................................................	27	1	5.00	5	0	0	0	0	0	5
..............................................................................................................................................................................................TGGCCGTTCTTGGAGTGTGGTACTC............	25	1	4.00	4	0	0	0	0	0	4
....................CACTTCAAGACGATGCCCTTCGAGAA.....................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	3
...............................GATGCCCTTCGAGAAGAATGCT..............................................................................................................................................................................	22	1	2.00	2	0	0	0	0	1	1
.................................................................................................................................................AT--AATCCTTG-G--GTTT-----CTTTAAGT.................................................	23	1	2.00	2	0	0	0	1	1	0
...................................................................................................................................................................................................GTTCTTGGAGTGTGGTAC..............	18	1	2.00	2	0	0	0	0	0	2
.............................................................................................................................................................................................TTGGCCGTTCTTGGAGTGTGGT................	22	1	2.00	2	0	0	0	0	1	1
..................................................GTGAGTC-TCT--C--------------AAGT---------G---AAT-----------C-----CCTC............................................................................................................	24	1	2.00	2	0	0	0	1	0	1
................................................................................................................................................................................................GCCGTTCTTGGAGTGTGGTACTC............	23	1	2.00	2	0	0	0	0	0	2
................................................................................................................................................................................................GCCGTTCTTGGAGTGTGGTACT.............	22	1	2.00	2	0	0	0	0	0	2
.............................................................................................................................................................................................TTGGCCGTTCTTGGAGTGTGGTA...............	23	1	1.00	1	1	0	0	0	0	0
..........................AAGACGATGCCCTTCGAGAAGA...................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
........................TCAAGACGATGCCCTTCGAGAAGA...................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
....................CACTTCAAGACGATGCCCTTCGA........................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................ATTTTGGCCGTTCTTGGAGTGTGGTA...............	26	1	1.00	1	0	0	0	0	0	1
.................AATCACTTCAAGACGATGCCCTTC..........................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
....................CACTTCAAGACGATGCCCTTCGAGA......................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................TTGGCCGTTCTTGGAGTGTGG.................	21	1	1.00	1	0	0	0	0	0	1
........................TCAAGACGATGCCCTTCG.........................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................AGGCTCCTGTCATTTTGGCCG...............................	21	1	1.00	1	1	0	0	0	0	0
..................ATCACTTCAAGACGATGCCCTTCGAGA......................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................TTTGGCCGTTCTTGGAGTGTGGTA...............	24	1	1.00	1	1	0	0	0	0	0
......................CTTCAAGACGATGCCCTTCGAGAAGA...................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................CCTGTCATTTTGGCCGTTCTTGGA.......................	24	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................CGTTCTTGGAGTGTGGTA...............	18	1	1.00	1	1	0	0	0	0	0
...........................AGACGATGCCCTTCGAGAC.....................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.......CTACATGGATAATCACTTCAA.......................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................GAT--AATCCTTG-G--GTTT-----CTTTAAG..................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................TTGGCCGTTCTTGGAGTGTGGTACT.............	25	1	1.00	1	1	0	0	0	0	0
........................TCAAGACGATGCCCTTCGAGAAGAG..................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................TTTTGGCCGTTCTTGGAGTGTGGTAC..............	26	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................TGGCCGTTCTTGGAGTGTGGTACT.............	24	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................GCCGTTCTTGGAGTGTGGTACTCGAAC........	27	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................ATTTTGGCCGTTCTTGGAGTGTGGT................	25	1	1.00	1	1	0	0	0	0	0
.........ACATGGATAATCACTTCAAGACGATGC...............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................TTGGCCGTTCTTGGAGTG....................	18	1	1.00	1	1	0	0	0	0	0
............TGGATAATCACTTCAAGACGATGCCCTTC..........................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................GCCGTTCTTGGAGTGTGGTAC..............	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................GTTCTTGGAGTGTGGTACT.............	19	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................GTTCTTGGAGTGTGGTACTC............	20	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................GTGTGGTACTCGAACTTCTTCAA	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................TTGGCCGTTCTTGGAGTGTGGTAC..............	24	1	1.00	1	1	0	0	0	0	0
...............................GATGCCCTTCGAGAAGAAT.................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................GTCATTTTGGCCGTTCTTGGA.......................	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................GGCCGTTCTTGGAGTGTGGTACTC............	24	1	1.00	1	0	0	0	0	0	1
.......................TTCAAGACGATGCCCTTCGAGAA.....................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................TTTTGGCCGTTCTTGGAGTGTGGTACTC............	28	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................TGGCCGTTCTTGGAGTGTGGTACTCG...........	26	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................TGTCATTTTGGCCGTTCTTGG........................	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................TTTGGCCGTTCTTGGAGTGTGGTAC..............	25	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................TTTGGCCGTTCTTGGAGTGTGGTACT.............	26	1	1.00	1	0	0	0	0	0	1
............................GACGATGCCCTTCGAGAAGA...................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
......................CTTCAAGACGATGCCCTTCGAGAA.....................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...............ATAATCACTTCAAGACGATGCCCTTCG.........................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.....CACTACATGGATAATCACTTCAAGACG...................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0

droBip1

GCGCCCACTACATGGACAACCACTTCAAGACGGTGCCCTTCGAGAAGAACGTAAGTC-ATGC--AA-------------AGT-AAATC-C-----------------------------CCAAG-------------TTTTGATGTTAAAAT-CCT--G--GTA-------TTTTAGGCTCCCGTCATTTTAGCCGTCCTGGGAGTGTGGTACTCGAACTTCTTTAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

GTGCCCATTACATGGATAATCACTTCAAGACATCGCCGCTGGACAAAAATGTAAGTC-GAGATT--------------GAT--ATTTGTGG--GCAGC-----------T-----CCTACCATG-------------TTTAAATATTTGG------------TTTTTTGGCTATCAGGCACCTGTCATTCTGGCTCTGCTGGGCGTCTGGTATTCGAACTTCTACAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................CATTCTGGCTCTGCTGGGC.......................	19	1	4.00	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CTGCTGGGCGTCTGGTATTCGAACT.......	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GTCATTCTGGCTCTGCTGGGC.......................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................CACTTCAAGACATCGCCGCTGGA........................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................CAAGACATCGCCGCTGGA........................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATTCTGGCTCTGCTGGGCGTCTGGTA...............	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................ATCACTTCAAGACATCGCCGCTGGAC.......................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATTCTGGCTCTGCTGGGC.......................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CTGGTATTCGAACTTCTACA.	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................AAGACATCGCCGCTGGAC.......................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................CTGGCTCTGCTGGGCGTCTGGTATT.............	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................ATCGCCGCTGGACAAAAATG................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........CATGGATAATCACTTCAAGAC....................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................CACCTGTCATTCTGGCTCTGCTGGGCGT.....................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CATTCTGGCTCTGCTGGGCGTCTG..................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATTCTGGCTCTGCTGGGCGTCTG..................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................TCAAGACATCGCCGCTGGACA......................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................ATCACTTCAAGACATCGCC..............................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATTCTGGCTCTGCTGGGCGTC....................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................CACTTCAAGACATCGCCGCTGGACAAAA...................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................CACTTCAAGACATCGCCGCTGGACAAA....................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................AATCACTTCAAGACATCGCCGCT...........................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGCTGGGCGTCTGGTATTCG...........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TCTGGCTCTGCTGGGCGTCTGGTA...............	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................GGGCGTCTGGTATTCGAAC........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........ATGGATAATCACTTCAAGACATCG................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................TGTCATTCTGGCTCTGCTGGGCG......................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGGCTCTGCTGGGCGTCTGGTA...............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................TTCAAGACATCGCCGCTGGACA......................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................AGACATCGCCGCTGGACAAAAA..................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................CACTTCAAGACATCGCCGCT...........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GGCTCTGCTGGGCGTCTGGTA...............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GGCTCTGCTGGGCGTCTGGTAT..............	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................CAAGACATCGCCGCTGGACAAAAATG................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GGCGTCTGGTATTCGAACTTCTACA.	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....CATTACATGGATAATCACTTCAAGACA...................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................CTCTGCTGGGCGTCTGGTA...............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................ACTTCAAGACATCGCCGCTG..........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................TCAAGACATCGCCGCTGGA........................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GTGCCCATTACATGGATAATCACTTCAAGACATCGCCGCTGGACAAAAATGTAAGTC-GAGATT--------------AAT--ATTTGTGG--GCAGC-----------T-----CCTACCATG-------------TTTAAATATTTGG------------TTTTTTGGCTATCAGGCACCTGTCATTCTGGCTCTGCTGGGCGTCTGGTATTCGAACTTCTACAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................AATCACTTCAAGACATCGCCGCTGGAC.......................................................................................................................................................................................	27	1	4.00	4	4	0	0	0	0	0
..................................................................................................................................................................................CACCTGTCATTCTGGCTCTGCTG..........................	23	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................TGTCATTCTGGCTCTGCTGGGCGTC....................	25	1	1.00	1	0	1	0	0	0	0
..........................AAGACATCGCCGCTGGAC.......................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................CATTCTGGCTCTGCTGGGCGTCTGGT................	26	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................TGGCTCTGCTGGGCGTCT...................	18	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................CATTCTGGCTCTGCTGGGCGTCTGGTATT.............	29	1	1.00	1	1	0	0	0	0	0
....................CACTTCAAGACATCGCCGCTGGAC.......................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................CAAGACATCGCCGCTGGAC.......................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..............GATAATCACTTCAAGACATCGC...............................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................GGGCGTCTGGTATTCGAACT.......	20	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................TCTGGCTCTGCTGGGCGTCT...................	20	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................TTCTGGCTCTGCTGGGCGTCTGGTA...............	25	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................CTGTCATTCTGGCTCTGCT...........................	19	1	1.00	1	0	1	0	0	0	0
..........................AAGACATCGCCGCTGGACAA.....................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........................TCAAGACATCGCCGCTGGA........................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droWil2

GTGCTCACTATATGGATAATCATTTCAAGACAAGTCCCTTGGAGAAAAATGTGAGTT-GTGTTTGAAA------------A--AAATTATCGATT----------------ATTTCTTATCT----------------------AATTGA---ATTT-G--CTG-------TTATAGGCACCCGTTATTCTGGCTCTATTGGGAGTCTGGTACTCGAATTTCTATAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................CTATTGGGAGTCTGGTACTCGAAT........	24	1	2.00	2	0	1	1	0	0
...................................................................................................................................................................................................CTATTGGGAGTCTGGTACTCGA..........	22	1	2.00	2	0	1	1	0	0
.......................TTCAAGACAAGTCCCTTGGAGT......................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................TCTGGCTCTATTGGGAGTCTGG.................	22	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................TATTCTGGCTCTATTGGGAGTCTGGT................	26	1	1.00	1	0	1	0	0	0
...............................AAGTCCCTTGGAGAAAAATG................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.........................CAAGACAAGTCCCTTGGAGAAAAAT.................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
..........................AAGACAAGTCCCTTGGAGAAAA...................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................TATTGGGAGTCTGGTACT.............	18	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................CTATTGGGAGTCTGGTACTCGAATT.......	25	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................ATTCTGGCTCTATTGGGA.......................	18	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................GCTCTATTGGGAGTCTGGTA...............	20	1	1.00	1	0	0	0	0	1
................................AGTCCCTTGGAGAAAAATGC...............................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................ATTCTGGCTCTATTGGGAGT.....................	20	1	1.00	1	0	0	1	0	0
............................GACAAGTCCCTTGGAGAAAA...................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................TATTGGGAGTCTGGTACTC............	19	1	1.00	1	0	0	0	1	0
...................................................................................................................CTTATCT----------------------AATTGA---ATTT-G--CTG-------TTATAG..................................................	27	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................GTTATTCTGGCTCTATTGGGAGTC....................	24	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................CTATTGGGAGTCTGGTACTCG...........	21	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................TGGCTCTATTGGGAGTCTGGTACTC............	25	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................ACCCGTTATTCTGGCTCTATTGGGA.......................	25	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................CTATTGGGAGTCTGGTACTC............	20	1	1.00	1	0	0	0	1	0

droVir3

GCGCCCATTTTATGGATACCCATTTTAAAACTGCACCACTGACCAAAAATGTGAGTGCATTTTTGAAA------------A--ATTTAAATGTT---T---------CATTATAAT----AT-AA------TAATGC-A--------------AATGTA--ATT-------CCTTAGGCACCTGTTATTCTGGCACTACTTGGCATTTGGTATTCGAATTTTTATAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................................................................................................CTACTTGGCATTTGGTATTCGAAT........	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TATTCTGGCACTACTTGGCATTTGGT................	26	1	3.00	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GCACCTGTTATTCTGGCA................................	18	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGGCACTACTTGGCATTTGGTATTC............	25	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTGGCATTTGGTATTCGAA.........	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CTACTTGGCATTTGGTATTCGAA.........	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TGCACCACTGACCAAAAAT.................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TCTGGCACTACTTGGCATTTGGTA...............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATTCTGGCACTACTTGGCATTT...................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................ACTGCACCACTGACCAAAAA..................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TGTTATTCTGGCACTACTTGGCATTTGGTATTCGAA.........	36	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................ACTACTTGGCATTTGGTA...............	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GCACCTGTTATTCTGGCACTACTTGGC.......................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TCTGGCACTACTTGGCAT.....................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................TATTCTGGCACTACTTGGCAT.....................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TTTATGGATACCCATTTTAAAACTGCACC..............................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............ATACCCATTTTAAAACTGCA................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AACTGCACCACTGACCAAAAATGCA..............................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................ACTGCACCACTGACCAAAAATGCA..............................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TCTGGCACTACTTGGCATTTGGTATTC............	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CTACTTGGCATTTGGTATTC............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTGGCATTTGGTATTCGA..........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CTACTTGGCATTTGGTATTCG...........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................TTTTAAAACTGCACCACTGACC.......................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TTCTGGCACTACTTGGCA......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AATGC-A--------------AATGTA--ATT-------CCTTAG..................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GTTATTCTGGCACTACTTG.........................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................ATTCTGGCACTACTTGGCA......................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............ATACCCATTTTAAAACTGCACCACT...........................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................ACTTGGCATTTGGTATTCGAA.........	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GTTATTCTGGCACTACTTGGCA......................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AACTGCACCACTGACCAAA....................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CCTGTTATTCTGGCACTAC............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TTATTCTGGCACTACTTGGCA......................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TGGCACTACTTGGCATTTGGTATTCGAA.........	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................GTTATTCTGGCACTACTTGGCATTTGGTATTCGAATT.......	37	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................GCACCTGTTATTCTGGCACT..............................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TACCCATTTTAAAACTGCA................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GCACCACTGACCAAAAATGCAC.............................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TTTTATGGATACCCATTTTAAAACTGC.................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TGAGTGCATTTTTGAAA------------C--T...............................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0

droMoj3

GTGCATACTATATGGATACTCATTTCCGCACTGCACCACTGGCGAAAAATGTAAGCG-TTGA----AAATCTTTACATGTA--A---------T--TAAATATAAATTAACATAGT-------GC-------------A--------------ATTTTCACATT-------TCGTAGGCACCCGTTATTCTGGCTCTGCTTGGCATTTGGTATTCCAATTTTTATAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..GCATACTATATGGATACTCA.............................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.................ACTCATTTCCGCACTGCACCACTGGC........................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...............ATACTCATTTCCGCACTGCACCACT...........................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................CCCGTTATTCTGGCTCTGCTTGGCATTT...................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................ATTCTGGCTCTGCTTGGCATTT...................	22	1	1.00	1	0	0	0	0	0	1
................TACTCATTTCCGCACTGCA................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droGri2

TTA-----------------------------------------------------------------------------------------------------------------------------------------------------------A--ATT-------TTGTAGGCACCTGTTGTGCTGGCCTTGCTTGGCATTTGGTATTCGAATTTTTATAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

-11.7	-11.5	-11.4	-11.3

dsi_22552

2r:5608335-5608396 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads